INFO 2025-06-26 15:35:31,794 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:35:31,794 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Ryan mission - ctdToUse = ctd1 INFO 2025-06-26 15:35:31,794 process.py process_mission():449 [1] Processing AUVCTD mission 2010.119.01 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:35:31,794 process.py download_process():165 [1] Download and processing steps for 2010.119.01 INFO 2025-06-26 15:35:31,794 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010119/2010.119.01 INFO 2025-06-26 15:35:31,795 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010119/2010.119.01 to /data/auv_data/dorado/missionlogs/2010.119.01 INFO 2025-06-26 15:35:34,317 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.119.01 INFO 2025-06-26 15:35:34,317 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.119.01/ctdDriver.log (4230630 bytes) INFO 2025-06-26 15:35:34,606 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.119.01/ctdDriver.log: [ 688 1036 1065 1335 1539 2084 2517 2644 3072 3111 5193 5271 9924 10733 10893 19655 20555 23226 29488 35559 36012 41399 43651] INFO 2025-06-26 15:35:34,617 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.119.01/ctdDriver2.log (4230239 bytes) INFO 2025-06-26 15:35:34,916 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.119.01/ctdDriver2.log: [ 1032 1061 1331 2081 2641 6889 7744 10728 10889 19652 20551 23222 29484 31275 35555 35735 36008 41395 43647] INFO 2025-06-26 15:35:34,929 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.119.01/gps.log (47588 bytes) INFO 2025-06-26 15:35:34,943 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.119.01/hydroscatlog.log (3706858 bytes) INFO 2025-06-26 15:35:35,320 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.119.01/hydroscatlog.log: [ 1 76 152 306 365 375 601 782 794 940 1044 1581 1676 2121 2126 2161 2308 2431 2594 2721 3143 3147 3898 4676 4888 5844 6968 7198 7318 7578 8896 10412 10963 11434 12045 13855 15561 16498 21023 24395 25865 26955 28125 31499 32940 34555 35619 37341 43119] INFO 2025-06-26 15:35:35,329 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.119.01/navigation.log (12946142 bytes) INFO 2025-06-26 15:35:36,253 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.119.01/isuslog.log (273269 bytes) INFO 2025-06-26 15:35:36,283 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.119.01/parosci.log (4312550 bytes) INFO 2025-06-26 15:35:36,650 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.119.01/tailCone.log (2640331 bytes) INFO 2025-06-26 15:35:36,976 logs2netcdfs.py download_process_logs():807 [1] Time to process: 2.66 seconds WARNING 2025-06-26 15:35:36,976 process.py download_process():196 [1] No lopc.bin file for 2010.119.01 INFO 2025-06-26 15:35:36,976 process.py calibrate():227 [1] Calibration steps for 2010.119.01 INFO 2025-06-26 15:35:37,090 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:35:37,092 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:35:37,630 calibrate.py _nudge_pos():1806 [1] 96: 0.010 -0.0000634 -0.0000160 39 0.13 -72.356 -22.850 2010-04-29T15:49:33.811106560 INFO 2025-06-26 15:35:37,669 calibrate.py _nudge_pos():1806 [1] 100: 0.010 -0.0004623 -0.0008967 2915 9.85 -6.968 -16.875 2010-04-29T15:59:28.810346240 INFO 2025-06-26 15:35:37,698 calibrate.py _nudge_pos():1806 [1] 103: 0.010 -0.0000281 -0.0000177 100 0.33 -12.661 -9.947 2010-04-29T15:59:50.808839168 INFO 2025-06-26 15:35:38,070 calibrate.py _nudge_pos():1806 [1] 143: 0.010 0.0012572 -0.0026120 14353 47.98 3.889 -10.088 2010-04-29T16:48:28.808942592 INFO 2025-06-26 15:35:38,469 calibrate.py _nudge_pos():1806 [1] 185: 0.020 0.0021213 -0.0040436 14533 48.51 6.490 -15.445 2010-04-29T17:37:40.806716672 INFO 2025-06-26 15:35:39,024 calibrate.py _nudge_pos():1806 [1] 244: 0.030 0.0032159 -0.0036077 12916 43.10 11.075 -15.512 2010-04-29T18:21:44.805590272 INFO 2025-06-26 15:35:39,129 calibrate.py _nudge_pos():1806 [1] 255: 0.020 0.0000258 -0.0000135 28 0.10 39.486 -25.839 2010-04-29T18:22:00.814493696 INFO 2025-06-26 15:35:39,465 calibrate.py _nudge_pos():1806 [1] 290: 0.020 -0.0000009 -0.0000209 20 0.06 -2.041 -61.264 2010-04-29T18:22:38.811890944 INFO 2025-06-26 15:35:39,505 calibrate.py _nudge_pos():1806 [1] 294: 0.020 -0.0007885 -0.0012045 6889 22.98 -5.093 -9.713 2010-04-29T18:45:41.807149056 INFO 2025-06-26 15:35:40,302 calibrate.py _nudge_pos():1806 [1] 377: 0.020 -0.0000033 0.0000041 15 0.05 -10.627 16.326 2010-04-29T18:47:06.811325952 INFO 2025-06-26 15:35:41,129 calibrate.py _nudge_pos():1806 [1] 462: 0.030 0.0000008 0.0000097 15 0.05 2.544 38.502 2010-04-29T18:48:33.805366528 INFO 2025-06-26 15:35:41,169 calibrate.py _nudge_pos():1806 [1] 466: 0.020 0.0000115 -0.0000087 80 0.26 6.469 -6.091 2010-04-29T18:48:52.814064384 INFO 2025-06-26 15:35:42,923 calibrate.py _nudge_pos():1862 [1] 599: - - - 4 0.01 - - INFO 2025-06-26 15:35:42,923 calibrate.py _nudge_pos():1868 [1] Points in final series = 54795 WARNING 2025-06-26 15:35:42,995 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 15:35:48,896 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 11 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:35:52,031 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 29 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:35:52,357 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 29 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:35:52,359 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.119.01/ctd1.nc INFO 2025-06-26 15:35:52,360 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 15:35:52,360 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:35:52,360 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:35:54,770 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 30 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:35:55,107 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 30 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:35:55,109 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.119.01/ctd2.nc INFO 2025-06-26 15:35:55,110 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 15:35:55,110 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:35:55,110 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 15:35:55,124 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.119.01 ERROR 2025-06-26 15:35:55,124 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.119.01 ERROR 2025-06-26 15:35:55,124 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.119.01 INFO 2025-06-26 15:35:55,168 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.119.01/dorado_2010.119.01_cal.nc INFO 2025-06-26 15:36:00,045 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:36:00,049 process.py align():251 [1] Alignment steps for 2010.119.01 INFO 2025-06-26 15:36:00,074 align.py process_cal():139 [1] Processing dorado_2010.119.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.119.01 INFO 2025-06-26 15:36:00,092 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:36:00,094 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 15:36:00,136 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:36:00,139 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 15:36:00,181 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:36:00,184 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 15:36:00,207 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:36:00,208 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:36:00,223 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:36:00,227 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 15:36:00,268 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.119.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:36:00,271 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:36:00,307 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.119.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:36:00,310 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:36:00,346 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.119.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:36:00,349 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:36:00,385 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.119.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:36:00,388 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:36:00,427 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.119.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:36:00,431 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:36:00,468 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.119.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:36:00,471 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:36:00,507 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.119.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:36:00,511 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:36:00,546 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.119.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:36:00,549 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:36:00,587 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.119.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:36:00,590 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:36:00,626 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.119.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:36:00,630 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:36:00,667 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.119.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:36:00,670 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:36:00,706 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.119.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:36:00,709 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:36:00,746 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.119.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:36:00,749 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:36:00,785 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.119.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:36:00,788 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:36:00,825 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.119.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:36:00,828 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:36:00,865 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.119.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:36:00,868 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:36:00,905 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.119.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:36:00,909 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:36:00,945 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.119.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:36:00,949 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:36:00,986 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.119.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:36:00,989 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:36:01,026 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.119.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:36:01,029 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:36:01,067 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.119.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:36:01,070 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:36:01,107 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.119.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:36:01,110 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:36:01,156 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:36:01,188 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:36:01,220 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:36:01,254 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 15:36:01,285 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.119.01/dorado_2010.119.01_align.nc INFO 2025-06-26 15:36:01,343 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:36:01,345 process.py resample():273 [1] Resampling steps for 2010.119.01 INFO 2025-06-26 15:36:01,345 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:36:01,367 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.119.01/dorado_2010.119.01_align.nc mission netCDF file INFO 2025-06-26 15:36:01,371 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.119.01/dorado_2010.119.01_align.nc mission netCDF file INFO 2025-06-26 15:36:01,372 resample.py get_mission_start_end():1145 [1] navigation: 2010-04-29T15:48:40.084786944 to 2010-04-29T18:51:56.611473408 (0 days 00:00:00.169988096 before mission_end) INFO 2025-06-26 15:36:01,374 resample.py get_mission_start_end():1145 [1] hs2 : 2010-04-29T15:48:02.487362560 to 2010-04-29T18:51:56.611473408 (0 days 00:00:00.169988096 before mission_end) INFO 2025-06-26 15:36:01,375 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-04-29T15:48:21.106086912 to 2010-04-29T18:51:56.781461504 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:36:01,376 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-04-29T15:48:21.706045952 to 2010-04-29T18:51:56.701467136 (0 days 00:00:00.079994368 before mission_end) INFO 2025-06-26 15:36:01,378 resample.py get_mission_start_end():1145 [1] isus : 2010-04-29T15:49:12.922537216 to 2010-04-29T18:51:56.201501440 (0 days 00:00:00.579960064 before mission_end) INFO 2025-06-26 15:36:01,379 resample.py get_mission_start_end():1145 [1] tailcone : 2010-04-29T15:47:53.467980288 to 2010-04-29T18:51:56.661469696 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 15:36:01,380 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.119.01/dorado_2010.119.01_align.nc mission netCDF file INFO 2025-06-26 15:36:01,380 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,517 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,543 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,567 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,591 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,614 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,635 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,657 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,677 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,700 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,725 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,749 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,772 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,792 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,811 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,829 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,848 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,867 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,888 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,909 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,931 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,952 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,972 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:01,993 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:02,014 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:02,027 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:02,039 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:02,050 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:02,074 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:36:02,229 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.119.01/dorado_2010.119.01_1S.nc INFO 2025-06-26 15:36:04,137 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 15:36:07,290 create_products.py gulper_odv():522 [1] Wrote 3 Gulper data lines to /data/auv_data/dorado/missionodvs/2010.119.01/dorado_2010.119.01_1S_Gulper.txt INFO 2025-06-26 15:36:07,290 process.py archive():337 [1] Archiving steps for 2010.119.01 INFO 2025-06-26 15:36:07,290 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.119.01/dorado_2010.119.01, BASE_PATH = /data/auv_data INFO 2025-06-26 15:36:07,291 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.119.01/dorado_2010.119.01 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 15:36:07,292 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.119.01_1S.nc INFO 2025-06-26 15:36:07,304 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.119.01/dorado_2010.119.01_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:36:07,305 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.119.01_cal.nc INFO 2025-06-26 15:36:07,354 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.119.01/dorado_2010.119.01_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:36:07,355 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.119.01_align.nc INFO 2025-06-26 15:36:07,400 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.119.01/dorado_2010.119.01_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:36:07,417 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.119.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010119/2010.119.01 done. INFO 2025-06-26 15:36:07,433 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.119.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010119/2010.119.01 done. INFO 2025-06-26 15:36:07,437 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.119.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010119/2010.119.01 done. INFO 2025-06-26 15:36:07,452 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.119.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010119/2010.119.01 done. INFO 2025-06-26 15:36:07,487 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.119.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010119/2010.119.01 done. INFO 2025-06-26 15:36:07,493 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.119.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010119/2010.119.01 done. INFO 2025-06-26 15:36:07,508 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.119.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010119/2010.119.01 done. INFO 2025-06-26 15:36:07,522 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.119.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010119/2010.119.01 done. INFO 2025-06-26 15:36:07,522 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:36:07,523 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2010/odv/dorado_2010.119.01_1S_Gulper.txt INFO 2025-06-26 15:36:07,528 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2010.119.01/dorado_2010.119.01_1S_Gulper.txt /Volumes/AUVCTD/surveys/2010/odv done. INFO 2025-06-26 15:36:07,529 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.119.01/dorado_2010.119.01_processing.log /Volumes/AUVCTD/surveys/2010/netcdf