INFO 2025-06-26 14:26:12,283 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 14:26:12,283 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - North bay shelf survey - ctdToUse = ctd2 INFO 2025-06-26 14:26:12,283 process.py process_mission():449 [1] Processing AUVCTD mission 2008.296.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 14:26:12,283 process.py download_process():165 [1] Download and processing steps for 2008.296.00 INFO 2025-06-26 14:26:12,283 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2008/2008296/2008.296.00 INFO 2025-06-26 14:26:12,283 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2008/2008296/2008.296.00 to /data/auv_data/dorado/missionlogs/2008.296.00 INFO 2025-06-26 14:26:19,863 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2008.296.00 INFO 2025-06-26 14:26:19,863 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.296.00/ctdDriver.log (21793948 bytes) INFO 2025-06-26 14:26:21,452 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2008.296.00/ctdDriver.log: [28266] INFO 2025-06-26 14:26:21,515 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.296.00/ctdDriver2.log (21803533 bytes) INFO 2025-06-26 14:26:23,048 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2008.296.00/ctdDriver2.log: [ 4228 5111 24528 56641] INFO 2025-06-26 14:26:23,121 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.296.00/gps.log (202532 bytes) INFO 2025-06-26 14:26:23,150 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.296.00/hydroscatlog.log (20826562 bytes) INFO 2025-06-26 14:26:25,242 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2008.296.00/hydroscatlog.log: [ 913 169398] INFO 2025-06-26 14:26:25,309 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.296.00/navigation.log (73131334 bytes) INFO 2025-06-26 14:26:30,549 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.296.00/isuslog.log (1441653 bytes) INFO 2025-06-26 14:26:30,692 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.296.00/parosci.log (25403126 bytes) INFO 2025-06-26 14:26:32,841 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.296.00/tailCone.log (3020059 bytes) INFO 2025-06-26 14:26:33,215 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.296.00/biolume.log (16873388 bytes) INFO 2025-06-26 14:26:34,858 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 14:26:35,799 logs2netcdfs.py download_process_logs():807 [1] Time to process: 15.94 seconds INFO 2025-06-26 14:26:35,799 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2008.296.00/lopc.bin (34270200 bytes) INFO 2025-06-26 14:26:35,799 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 14:26:35 2025 INFO 2025-06-26 14:26:35,799 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2008.296.00/parosci.nc INFO 2025-06-26 14:26:35,799 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 14:26:35,799 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2008.296.00/parosci.nc INFO 2025-06-26 14:26:35,803 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1224713397.5, sensor_off_time = 1224775414.1 INFO 2025-06-26 14:26:35,803 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 62016 seconds. Expecting to read 124032 L frames from the lopc.bin file. INFO 2025-06-26 14:26:35,803 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 124032 records from the lopc.bin file. INFO 2025-06-26 14:26:36,541 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2008-10-22 22:09:57 Z and endTime = 2008-10-23 15:23:34 Z with 124032 records expected to be read from lopc.bin INFO 2025-06-26 14:26:36,541 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2008.296.00/lopc.bin INFO 2025-06-26 14:26:36,541 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2008.296.00/lopc.nc INFO 2025-06-26 14:26:36,541 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2008.296.00/lopc.nc INFO 2025-06-26 14:26:36,542 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2008.296.00 INFO 2025-06-26 14:26:36,542 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 14:26:36,577 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 14:26:36,577 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 14:26:36,578 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 14:26:36,630 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 14:26:36,631 process.py calibrate():227 [1] Calibration steps for 2008.296.00 INFO 2025-06-26 14:26:37,093 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 14:26:37,095 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 14:26:38,011 calibrate.py _nudge_pos():1806 [1] 107: 0.150 0.0003557 -0.0000720 1138 3.80 13.898 -3.512 2008-10-22T22:15:29.926003456 INFO 2025-06-26 14:26:38,657 calibrate.py _nudge_pos():1806 [1] 165: 0.160 0.0000244 0.0003106 9461 31.55 0.115 1.825 2008-10-22T22:47:59.922419456 INFO 2025-06-26 14:26:39,213 calibrate.py _nudge_pos():1806 [1] 221: 0.160 -0.0001775 0.0003814 9709 32.38 -0.813 2.183 2008-10-22T23:21:17.925547008 INFO 2025-06-26 14:26:39,893 calibrate.py _nudge_pos():1806 [1] 290: 0.180 0.0000592 0.0001114 5119 17.06 0.514 1.210 2008-10-22T23:39:29.920740352 INFO 2025-06-26 14:26:40,548 calibrate.py _nudge_pos():1806 [1] 349: 0.180 0.0000528 -0.0000233 4149 13.83 0.567 -0.312 2008-10-22T23:54:17.919908352 INFO 2025-06-26 14:26:41,109 calibrate.py _nudge_pos():1806 [1] 403: 0.180 -0.0000738 0.0000099 2224 7.41 -1.476 0.247 2008-10-23T00:02:35.925792512 INFO 2025-06-26 14:26:41,861 calibrate.py _nudge_pos():1806 [1] 478: 0.180 0.0000074 0.0002967 4850 16.16 0.068 3.401 2008-10-23T00:19:59.924273664 INFO 2025-06-26 14:26:42,555 calibrate.py _nudge_pos():1806 [1] 547: 0.180 -0.0000635 0.0000553 2147 7.16 -1.314 1.432 2008-10-23T00:28:17.920158720 INFO 2025-06-26 14:26:43,130 calibrate.py _nudge_pos():1806 [1] 605: 0.190 0.0000223 -0.0000341 4095 13.65 0.242 -0.463 2008-10-23T00:42:53.920148480 INFO 2025-06-26 14:26:43,804 calibrate.py _nudge_pos():1806 [1] 672: 0.190 0.0001228 0.0000742 9749 32.50 0.560 0.423 2008-10-23T01:16:29.922042880 INFO 2025-06-26 14:26:44,471 calibrate.py _nudge_pos():1806 [1] 739: 0.200 0.0001285 0.0000352 9718 32.39 0.588 0.202 2008-10-23T01:49:59.924348416 INFO 2025-06-26 14:26:45,176 calibrate.py _nudge_pos():1806 [1] 808: 0.010 0.0001861 0.0000388 9289 30.96 0.890 0.232 2008-10-23T02:22:06.122394880 INFO 2025-06-26 14:26:45,888 calibrate.py _nudge_pos():1806 [1] 879: 0.010 0.0001993 0.0000667 9279 30.93 0.954 0.400 2008-10-23T02:54:12.120454912 INFO 2025-06-26 14:26:45,900 calibrate.py _nudge_pos():1806 [1] 880: 0.020 0.0000051 -0.0000131 125 0.41 1.819 -5.893 2008-10-23T02:54:37.118742272 INFO 2025-06-26 14:26:46,639 calibrate.py _nudge_pos():1806 [1] 945: 0.020 0.0001551 0.0000429 7985 26.61 0.863 0.299 2008-10-23T03:22:18.124955648 INFO 2025-06-26 14:26:47,166 calibrate.py _nudge_pos():1806 [1] 995: 0.020 0.0000411 0.0000161 924 3.08 1.975 0.966 2008-10-23T03:26:12.118925824 INFO 2025-06-26 14:26:47,672 calibrate.py _nudge_pos():1806 [1] 1045: 0.020 0.0000198 0.0003374 4735 15.78 0.186 3.962 2008-10-23T03:42:48.120695040 INFO 2025-06-26 14:26:48,201 calibrate.py _nudge_pos():1806 [1] 1096: 0.030 0.0013453 0.0000173 2840 9.46 21.056 0.339 2008-10-23T03:53:06.118359296 INFO 2025-06-26 14:26:48,685 calibrate.py _nudge_pos():1806 [1] 1144: 0.020 0.0000214 0.0000304 4624 15.41 0.206 0.366 2008-10-23T04:09:18.121772544 INFO 2025-06-26 14:26:49,331 calibrate.py _nudge_pos():1806 [1] 1206: 0.030 0.0010796 0.0000707 2725 9.08 17.612 1.442 2008-10-23T04:19:24.120258816 INFO 2025-06-26 14:26:49,883 calibrate.py _nudge_pos():1806 [1] 1259: 0.030 0.0000210 0.0002881 4449 14.83 0.210 3.600 2008-10-23T04:35:06.125726976 INFO 2025-06-26 14:26:50,396 calibrate.py _nudge_pos():1806 [1] 1309: 0.040 0.0044371 0.0020920 11334 37.78 17.402 10.261 2008-10-23T05:13:42.117070592 INFO 2025-06-26 14:26:50,927 calibrate.py _nudge_pos():1806 [1] 1361: 0.040 0.0046837 0.0019119 10964 36.55 18.995 9.694 2008-10-23T05:51:06.123345920 INFO 2025-06-26 14:26:51,422 calibrate.py _nudge_pos():1806 [1] 1409: 0.050 0.0047871 0.0019840 10953 36.51 19.438 10.068 2008-10-23T06:28:24.120032512 INFO 2025-06-26 14:26:51,946 calibrate.py _nudge_pos():1806 [1] 1460: 0.050 0.0048445 0.0019740 11059 36.86 19.491 9.923 2008-10-23T07:06:06.125074688 INFO 2025-06-26 14:26:52,480 calibrate.py _nudge_pos():1806 [1] 1510: 0.060 0.0014178 0.0002202 3295 10.98 19.152 3.716 2008-10-23T07:17:54.126573056 INFO 2025-06-26 14:26:53,026 calibrate.py _nudge_pos():1806 [1] 1562: 0.060 0.0000492 0.0000543 4994 16.65 0.438 0.604 2008-10-23T07:35:24.124643328 INFO 2025-06-26 14:26:53,540 calibrate.py _nudge_pos():1806 [1] 1611: 0.070 -0.0000568 -0.0000209 2460 8.20 -1.028 -0.472 2008-10-23T07:44:24.117651200 INFO 2025-06-26 14:26:54,090 calibrate.py _nudge_pos():1806 [1] 1664: 0.070 0.0000774 0.0002618 4064 13.55 0.847 3.582 2008-10-23T07:58:49.118394624 INFO 2025-06-26 14:26:54,630 calibrate.py _nudge_pos():1806 [1] 1715: 0.060 -0.0000108 0.0000235 2325 7.75 -0.207 0.562 2008-10-23T08:07:24.123114240 INFO 2025-06-26 14:26:55,171 calibrate.py _nudge_pos():1806 [1] 1766: 0.070 0.0000205 0.0000387 5089 16.96 0.179 0.423 2008-10-23T08:25:12.119951616 INFO 2025-06-26 14:26:55,706 calibrate.py _nudge_pos():1806 [1] 1817: 0.080 0.0001712 0.0000530 9739 32.46 0.782 0.303 2008-10-23T08:58:30.123079168 INFO 2025-06-26 14:26:56,466 calibrate.py _nudge_pos():1806 [1] 1889: 0.080 0.0001822 0.0000568 9724 32.41 0.833 0.325 2008-10-23T09:32:06.124973568 INFO 2025-06-26 14:26:57,028 calibrate.py _nudge_pos():1806 [1] 1943: 0.090 0.0002289 0.0000149 9364 31.21 1.087 0.088 2008-10-23T10:04:12.123033600 INFO 2025-06-26 14:26:57,773 calibrate.py _nudge_pos():1806 [1] 2014: 0.100 0.0002545 0.0001207 9519 31.73 1.188 0.705 2008-10-23T10:37:06.117805824 INFO 2025-06-26 14:26:58,509 calibrate.py _nudge_pos():1806 [1] 2084: 0.100 0.0003344 0.0000893 9254 30.85 1.606 0.536 2008-10-23T11:09:06.126276096 INFO 2025-06-26 14:26:59,271 calibrate.py _nudge_pos():1806 [1] 2156: 0.110 0.0000626 0.0000183 875 2.91 3.185 1.163 2008-10-23T11:13:12.119424256 INFO 2025-06-26 14:26:59,284 calibrate.py _nudge_pos():1806 [1] 2157: 0.110 -0.0000097 0.0000217 95 0.31 -4.601 12.814 2008-10-23T11:13:31.118122752 INFO 2025-06-26 14:26:59,828 calibrate.py _nudge_pos():1806 [1] 2208: 0.110 0.0000300 0.0003610 5354 17.85 0.249 3.748 2008-10-23T11:32:12.121328896 INFO 2025-06-26 14:27:00,360 calibrate.py _nudge_pos():1806 [1] 2257: 0.100 0.0013480 0.0000877 3090 10.30 19.391 1.577 2008-10-23T11:43:18.125704448 INFO 2025-06-26 14:27:00,912 calibrate.py _nudge_pos():1806 [1] 2309: 0.110 0.0001199 0.0000661 5024 16.75 1.061 0.732 2008-10-23T12:00:54.123363840 INFO 2025-06-26 14:27:01,456 calibrate.py _nudge_pos():1806 [1] 2357: 0.110 0.0010521 0.0001480 2495 8.31 18.746 3.299 2008-10-23T12:10:00.125959936 INFO 2025-06-26 14:27:01,972 calibrate.py _nudge_pos():1806 [1] 2405: 0.120 -0.0000023 0.0003036 4084 13.61 -0.025 4.132 2008-10-23T12:24:24.116772352 INFO 2025-06-26 14:27:02,501 calibrate.py _nudge_pos():1806 [1] 2454: 0.120 0.0046896 0.0022121 11638 38.80 17.911 10.565 2008-10-23T13:04:00.124004864 INFO 2025-06-26 14:27:03,152 calibrate.py _nudge_pos():1806 [1] 2514: 0.130 0.0048578 0.0020539 11520 38.41 18.744 9.908 2008-10-23T13:43:24.122059776 INFO 2025-06-26 14:27:03,811 calibrate.py _nudge_pos():1806 [1] 2576: 0.130 0.0048577 0.0019392 11213 37.38 19.267 9.613 2008-10-23T14:21:48.124225024 INFO 2025-06-26 14:27:04,496 calibrate.py _nudge_pos():1806 [1] 2640: 0.150 0.0047323 0.0018701 11144 37.15 18.894 9.329 2008-10-23T15:00:00.117212416 INFO 2025-06-26 14:27:05,210 calibrate.py _nudge_pos():1806 [1] 2705: 0.150 0.0001675 -0.0000075 3100 10.33 2.405 -0.134 2008-10-23T15:11:24.120355072 INFO 2025-06-26 14:27:05,865 calibrate.py _nudge_pos():1806 [1] 2765: 0.140 0.0006888 0.0006371 3124 10.41 9.811 11.337 2008-10-23T15:22:48.123497728 INFO 2025-06-26 14:27:05,920 calibrate.py _nudge_pos():1806 [1] 2770: 0.150 0.0000174 0.0000115 55 0.18 14.378 11.825 2008-10-23T15:23:03.122470400 INFO 2025-06-26 14:27:06,256 calibrate.py _nudge_pos():1862 [1] 2768: - - - 5 0.01 - - INFO 2025-06-26 14:27:06,256 calibrate.py _nudge_pos():1868 [1] Points in final series = 309765 WARNING 2025-06-26 14:27:06,657 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 14:27:39,561 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 14:27:57,223 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 50 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:27:59,108 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 50 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:27:59,112 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2008.296.00/ctd1.nc INFO 2025-06-26 14:27:59,113 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 14:27:59,114 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 14:27:59,114 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 14:28:12,822 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:28:14,735 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:28:14,739 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2008.296.00/ctd2.nc INFO 2025-06-26 14:28:14,741 calibrate.py _range_qc_combined_nc():898 [1] Setting 172 ctd2_salinity values to NaN INFO 2025-06-26 14:28:14,741 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 14:28:14,741 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 14:28:14,831 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 14:28:17,708 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 63 64 65 66 67 68 69 120 121 122 123 124 125 126 127 420 421 422 423 424 425 426 427 540 541 542 543 544 545 546 1800 1801 1802 1803 1804 1805 1806 2040 2220 2221 2222 2223 2224 2225 8340 8341 12000 12001 12002 12003 12120 12121 12122 12123 12124 12125 12126 12960 12961 12962 12963 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3586080 3586081 3586082 3586083 3633240 3633241 3633242 3633243 3633244 3633245 3633246 3720300 3720301 3720302 3720303 3720304 3720305 3720306 3720307 3720308 3720309 3720310 3720311] INFO 2025-06-26 14:28:18,299 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 14:28:18,306 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 14:28:18,306 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2008.296.00 ERROR 2025-06-26 14:28:18,306 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2008.296.00 INFO 2025-06-26 14:28:18,358 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2008.296.00/dorado_2008.296.00_cal.nc INFO 2025-06-26 14:28:37,547 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 14:28:37,557 process.py align():251 [1] Alignment steps for 2008.296.00 INFO 2025-06-26 14:28:37,597 align.py process_cal():139 [1] Processing dorado_2008.296.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2008.296.00 INFO 2025-06-26 14:28:37,676 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:28:37,684 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:28:37,874 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:28:37,885 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:28:38,082 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:28:38,092 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:28:38,211 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 14:28:38,212 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 14:28:38,288 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:28:38,299 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:28:38,484 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2008.296.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:28:38,493 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:28:38,657 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2008.296.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:28:38,666 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:28:38,832 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2008.296.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:28:38,841 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:28:39,009 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.296.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:28:39,020 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:28:39,188 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.296.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:28:39,197 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:28:39,366 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.296.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:28:39,375 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:28:39,544 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.296.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:28:39,554 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:28:39,718 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.296.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:28:39,728 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:28:39,897 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.296.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:28:39,906 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:28:40,085 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.296.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:28:40,101 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:28:40,266 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.296.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:28:40,275 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:28:40,453 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.296.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:28:40,463 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:28:40,636 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.296.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:28:40,644 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:28:40,815 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.296.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:28:40,824 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:28:41,008 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.296.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:28:41,018 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:28:41,193 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.296.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:28:41,202 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:28:41,373 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.296.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:28:41,383 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:28:41,557 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.296.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:28:41,568 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:28:41,735 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.296.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:28:41,744 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:28:41,910 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.296.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:28:41,919 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:28:42,120 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 14:28:42,245 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 14:28:42,372 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 14:28:42,504 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 14:28:42,639 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 1.01 INFO 2025-06-26 14:28:42,677 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2008.296.00/dorado_2008.296.00_align.nc INFO 2025-06-26 14:28:42,812 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 14:28:42,814 process.py resample():273 [1] Resampling steps for 2008.296.00 INFO 2025-06-26 14:28:42,815 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 14:28:42,846 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2008.296.00/dorado_2008.296.00_align.nc mission netCDF file INFO 2025-06-26 14:28:42,853 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2008.296.00/dorado_2008.296.00_align.nc mission netCDF file INFO 2025-06-26 14:28:42,855 resample.py get_mission_start_end():1145 [1] navigation: 2008-10-22T22:10:29.716569344 to 2008-10-23T15:23:34.120346880 (0 days 00:00:00.029998080 before mission_end) INFO 2025-06-26 14:28:42,858 resample.py get_mission_start_end():1145 [1] hs2 : 2008-10-22T22:10:02.828411392 to 2008-10-23T15:23:34.150344960 (0 days 00:00:00 before mission_end) INFO 2025-06-26 14:28:42,860 resample.py get_mission_start_end():1145 [1] ctd1 : 2008-10-22T22:10:47.735334912 to 2008-10-23T15:23:34.040352256 (0 days 00:00:00.109992704 before mission_end) INFO 2025-06-26 14:28:42,863 resample.py get_mission_start_end():1145 [1] ctd2 : 2008-10-22T22:10:23.786975744 to 2008-10-23T15:23:33.980356352 (0 days 00:00:00.169988608 before mission_end) INFO 2025-06-26 14:28:42,864 resample.py get_mission_start_end():1145 [1] isus : 2008-10-22T22:11:17.283310848 to 2008-10-23T15:23:34.040352256 (0 days 00:00:00.109992704 before mission_end) INFO 2025-06-26 14:28:42,866 resample.py get_mission_start_end():1145 [1] biolume : 2008-10-22T22:09:56.508809984 to 2008-10-23T15:23:32.740407040 (0 days 00:00:01.409937920 before mission_end) INFO 2025-06-26 14:28:42,868 resample.py get_mission_start_end():1145 [1] tailcone : 2008-10-22T22:10:01.278517504 to 2008-10-23T15:23:33.690376192 (0 days 00:00:00.459968768 before mission_end) INFO 2025-06-26 14:28:42,868 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2008.296.00/dorado_2008.296.00_align.nc mission netCDF file INFO 2025-06-26 14:28:42,869 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:43,507 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:43,610 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:43,708 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:43,806 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:43,889 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:43,971 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:44,053 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:44,133 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:44,210 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:44,287 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:44,365 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:44,441 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:44,518 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:44,594 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:44,671 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:44,747 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:44,826 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:44,910 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:44,996 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:45,078 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:45,159 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:45,239 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:45,270 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:45,295 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:45,319 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:45,348 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:45,378 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 14:28:45,834 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2008.296.00/dorado_2008.296.00_1S.nc INFO 2025-06-26 14:28:50,584 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd2 INFO 2025-06-26 14:29:05,089 create_products.py gulper_odv():522 [1] Wrote 10 Gulper data lines to /data/auv_data/dorado/missionodvs/2008.296.00/dorado_2008.296.00_1S_Gulper.txt INFO 2025-06-26 14:29:05,090 process.py archive():337 [1] Archiving steps for 2008.296.00 INFO 2025-06-26 14:29:05,090 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2008.296.00/dorado_2008.296.00, BASE_PATH = /data/auv_data INFO 2025-06-26 14:29:05,120 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2008.296.00/dorado_2008.296.00 files to /Volumes/AUVCTD/surveys/2008/netcdf INFO 2025-06-26 14:29:05,122 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2008/netcdf/dorado_2008.296.00_1S.nc INFO 2025-06-26 14:29:05,166 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.296.00/dorado_2008.296.00_1S.nc /Volumes/AUVCTD/surveys/2008/netcdf done. INFO 2025-06-26 14:29:05,167 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2008/netcdf/dorado_2008.296.00_cal.nc INFO 2025-06-26 14:29:05,384 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.296.00/dorado_2008.296.00_cal.nc /Volumes/AUVCTD/surveys/2008/netcdf done. INFO 2025-06-26 14:29:05,385 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2008/netcdf/dorado_2008.296.00_align.nc INFO 2025-06-26 14:29:05,578 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.296.00/dorado_2008.296.00_align.nc /Volumes/AUVCTD/surveys/2008/netcdf done. INFO 2025-06-26 14:29:05,641 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.296.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008296/2008.296.00 done. INFO 2025-06-26 14:29:05,701 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.296.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008296/2008.296.00 done. INFO 2025-06-26 14:29:05,707 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.296.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008296/2008.296.00 done. INFO 2025-06-26 14:29:05,765 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.296.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008296/2008.296.00 done. INFO 2025-06-26 14:29:05,954 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.296.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008296/2008.296.00 done. INFO 2025-06-26 14:29:05,963 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.296.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008296/2008.296.00 done. INFO 2025-06-26 14:29:06,032 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.296.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008296/2008.296.00 done. INFO 2025-06-26 14:29:06,047 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.296.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008296/2008.296.00 done. INFO 2025-06-26 14:29:06,201 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.296.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008296/2008.296.00 done. INFO 2025-06-26 14:29:06,208 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.296.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008296/2008.296.00 done. INFO 2025-06-26 14:29:06,208 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 14:29:06,209 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2008/odv/dorado_2008.296.00_1S_Gulper.txt INFO 2025-06-26 14:29:06,213 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2008.296.00/dorado_2008.296.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2008/odv done. INFO 2025-06-26 14:29:06,213 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.296.00/dorado_2008.296.00_processing.log /Volumes/AUVCTD/surveys/2008/netcdf