INFO 2025-06-26 14:18:19,924 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 14:18:19,924 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - North bay shelf survey - ctdToUse = ctd2 INFO 2025-06-26 14:18:19,925 process.py process_mission():449 [1] Processing AUVCTD mission 2008.288.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 14:18:19,925 process.py download_process():165 [1] Download and processing steps for 2008.288.00 INFO 2025-06-26 14:18:19,925 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2008/2008288/2008.288.00 INFO 2025-06-26 14:18:19,925 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2008/2008288/2008.288.00 to /data/auv_data/dorado/missionlogs/2008.288.00 INFO 2025-06-26 14:18:26,878 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2008.288.00 INFO 2025-06-26 14:18:26,878 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.288.00/ctdDriver.log (21298948 bytes) INFO 2025-06-26 14:18:28,403 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2008.288.00/ctdDriver.log: [201445 224145 230749] INFO 2025-06-26 14:18:28,463 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.288.00/ctdDriver2.log (21304749 bytes) INFO 2025-06-26 14:18:29,972 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2008.288.00/ctdDriver2.log: [ 22613 44219 159221 184497] INFO 2025-06-26 14:18:30,041 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.288.00/gps.log (204764 bytes) INFO 2025-06-26 14:18:30,072 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.288.00/hydroscatlog.log (20353726 bytes) INFO 2025-06-26 14:18:32,123 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2008.288.00/hydroscatlog.log: [16995 33550] INFO 2025-06-26 14:18:32,187 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.288.00/navigation.log (71480986 bytes) INFO 2025-06-26 14:18:37,309 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.288.00/isuslog.log (1409077 bytes) INFO 2025-06-26 14:18:37,449 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.288.00/parosci.log (24833942 bytes) INFO 2025-06-26 14:18:39,558 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.288.00/tailCone.log (2945035 bytes) INFO 2025-06-26 14:18:39,926 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.288.00/biolume.log (16490684 bytes) INFO 2025-06-26 14:18:41,535 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 14:18:42,385 logs2netcdfs.py download_process_logs():807 [1] Time to process: 15.51 seconds INFO 2025-06-26 14:18:42,385 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2008.288.00/lopc.bin (35949873 bytes) INFO 2025-06-26 14:18:42,385 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 14:18:42 2025 INFO 2025-06-26 14:18:42,385 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2008.288.00/parosci.nc INFO 2025-06-26 14:18:42,385 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 14:18:42,385 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2008.288.00/parosci.nc INFO 2025-06-26 14:18:42,389 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1224022123.8, sensor_off_time = 1224082729.1 INFO 2025-06-26 14:18:42,389 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 60605 seconds. Expecting to read 121210 L frames from the lopc.bin file. INFO 2025-06-26 14:18:42,389 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 121210 records from the lopc.bin file. INFO 2025-06-26 14:18:43,129 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2008-10-14 22:08:43 Z and endTime = 2008-10-15 14:58:49 Z with 121210 records expected to be read from lopc.bin INFO 2025-06-26 14:18:43,129 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2008.288.00/lopc.bin INFO 2025-06-26 14:18:43,129 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2008.288.00/lopc.nc INFO 2025-06-26 14:18:43,130 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2008.288.00/lopc.nc INFO 2025-06-26 14:18:43,130 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2008.288.00 INFO 2025-06-26 14:18:43,130 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 14:18:43,240 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 14:18:43,241 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 14:18:43,241 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 14:18:43,558 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 14:18:43,560 process.py calibrate():227 [1] Calibration steps for 2008.288.00 INFO 2025-06-26 14:18:43,966 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 14:18:43,968 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 14:18:44,828 calibrate.py _nudge_pos():1806 [1] 110: 0.150 0.0000559 0.0000109 1120 3.73 2.224 0.539 2008-10-14T22:14:11.625249024 INFO 2025-06-26 14:18:45,409 calibrate.py _nudge_pos():1806 [1] 168: 0.160 -0.0001667 0.0002889 9225 30.75 -0.804 1.741 2008-10-14T22:45:53.624953088 INFO 2025-06-26 14:18:46,107 calibrate.py _nudge_pos():1806 [1] 238: 0.160 -0.0000456 0.0002465 9465 31.55 -0.214 1.448 2008-10-14T23:18:35.620547072 INFO 2025-06-26 14:18:46,118 calibrate.py _nudge_pos():1806 [1] 239: 0.170 0.0000255 0.0000043 90 0.30 12.772 2.715 2008-10-14T23:18:53.619314176 INFO 2025-06-26 14:18:46,617 calibrate.py _nudge_pos():1806 [1] 289: 0.170 0.0001275 0.0001413 6414 21.38 0.884 1.224 2008-10-14T23:41:05.618065920 INFO 2025-06-26 14:18:47,201 calibrate.py _nudge_pos():1806 [1] 347: 0.170 0.0000383 -0.0000588 4245 14.15 0.401 -0.770 2008-10-14T23:56:11.616000768 INFO 2025-06-26 14:18:47,784 calibrate.py _nudge_pos():1806 [1] 404: 0.170 -0.0000538 0.0000000 2180 7.26 -1.099 0.001 2008-10-15T00:04:23.622296064 INFO 2025-06-26 14:18:48,486 calibrate.py _nudge_pos():1806 [1] 474: 0.170 0.0000510 0.0003474 4185 13.95 0.543 4.616 2008-10-15T00:19:29.620230912 INFO 2025-06-26 14:18:48,880 calibrate.py _nudge_pos():1806 [1] 513: 0.180 -0.0000069 0.0000321 2240 7.46 -0.138 0.797 2008-10-15T00:27:35.616937984 INFO 2025-06-26 14:18:49,499 calibrate.py _nudge_pos():1806 [1] 574: 0.180 0.0000696 -0.0000117 4770 15.90 0.649 -0.137 2008-10-15T00:44:29.617474048 INFO 2025-06-26 14:18:50,029 calibrate.py _nudge_pos():1806 [1] 626: 0.180 -0.0000775 0.0000442 9525 31.75 -0.362 0.258 2008-10-15T01:17:05.623478528 INFO 2025-06-26 14:18:50,697 calibrate.py _nudge_pos():1806 [1] 692: 0.190 0.0001817 0.0000449 9665 32.21 0.836 0.258 2008-10-15T01:50:23.616606720 INFO 2025-06-26 14:18:51,327 calibrate.py _nudge_pos():1806 [1] 754: 0.190 0.0001405 0.0000623 9385 31.28 0.666 0.369 2008-10-15T02:22:41.623843840 INFO 2025-06-26 14:18:52,037 calibrate.py _nudge_pos():1806 [1] 823: 0.200 0.0001646 0.0000727 9380 31.26 0.780 0.431 2008-10-15T02:55:05.620670976 INFO 2025-06-26 14:18:52,780 calibrate.py _nudge_pos():1806 [1] 893: 0.200 0.0000995 0.0000191 6524 21.74 0.678 0.162 2008-10-15T03:17:59.616545792 INFO 2025-06-26 14:18:53,513 calibrate.py _nudge_pos():1806 [1] 963: 0.010 0.0000596 0.0002863 4575 15.25 0.579 3.479 2008-10-15T03:34:23.819123456 INFO 2025-06-26 14:18:54,122 calibrate.py _nudge_pos():1806 [1] 1020: 0.200 0.0010057 0.0000041 2239 7.46 19.969 0.101 2008-10-15T03:42:47.624610304 INFO 2025-06-26 14:18:54,770 calibrate.py _nudge_pos():1806 [1] 1083: 0.010 0.0000945 0.0000985 4520 15.06 0.929 1.212 2008-10-15T03:58:53.818421504 INFO 2025-06-26 14:18:54,801 calibrate.py _nudge_pos():1806 [1] 1086: 0.010 -0.0000098 0.0000086 85 0.28 -5.196 5.720 2008-10-15T03:59:12.817120000 INFO 2025-06-26 14:18:55,277 calibrate.py _nudge_pos():1806 [1] 1132: 0.010 0.0009763 0.0001282 2500 8.33 17.363 2.851 2008-10-15T04:08:17.819784960 INFO 2025-06-26 14:18:55,865 calibrate.py _nudge_pos():1806 [1] 1189: 0.010 0.0000077 0.0002718 4128 13.76 0.083 3.660 2008-10-15T04:22:59.819363840 INFO 2025-06-26 14:18:56,388 calibrate.py _nudge_pos():1806 [1] 1239: 0.020 0.0033058 0.0017849 9685 32.28 15.175 10.246 2008-10-15T04:56:05.823313152 INFO 2025-06-26 14:18:56,901 calibrate.py _nudge_pos():1806 [1] 1288: 0.020 0.0044847 0.0020292 11578 38.60 17.222 9.742 2008-10-15T05:35:29.821368320 INFO 2025-06-26 14:18:57,448 calibrate.py _nudge_pos():1806 [1] 1340: 0.020 0.0048446 0.0019699 11265 37.55 19.131 9.722 2008-10-15T06:13:53.823533312 INFO 2025-06-26 14:18:58,044 calibrate.py _nudge_pos():1806 [1] 1396: 0.030 0.0046405 0.0016562 10765 35.88 19.182 8.553 2008-10-15T06:50:41.822274816 INFO 2025-06-26 14:18:58,588 calibrate.py _nudge_pos():1806 [1] 1447: 0.030 0.0013503 0.0002087 3170 10.56 18.960 3.660 2008-10-15T07:02:05.825417472 INFO 2025-06-26 14:18:58,599 calibrate.py _nudge_pos():1806 [1] 1448: 0.030 0.0000183 0.0000100 95 0.31 8.659 5.941 2008-10-15T07:02:24.824115968 INFO 2025-06-26 14:18:59,120 calibrate.py _nudge_pos():1806 [1] 1497: 0.030 0.0000943 0.0000412 5035 16.78 0.834 0.455 2008-10-15T07:19:59.821843968 INFO 2025-06-26 14:18:59,659 calibrate.py _nudge_pos():1806 [1] 1548: 0.040 -0.0000501 0.0000032 2180 7.26 -1.023 0.083 2008-10-15T07:28:05.818550528 INFO 2025-06-26 14:19:00,199 calibrate.py _nudge_pos():1806 [1] 1599: 0.030 0.0000863 0.0002380 5060 16.86 0.759 2.615 2008-10-15T07:45:47.825798400 INFO 2025-06-26 14:19:00,254 calibrate.py _nudge_pos():1806 [1] 1604: 0.040 0.0000360 0.0000432 30 0.10 55.221 82.908 2008-10-15T07:45:57.825113344 INFO 2025-06-26 14:19:00,737 calibrate.py _nudge_pos():1806 [1] 1649: 0.040 0.0000031 0.0000693 2460 8.20 0.056 1.568 2008-10-15T07:54:53.818395136 INFO 2025-06-26 14:19:01,271 calibrate.py _nudge_pos():1806 [1] 1699: 0.050 0.0000558 0.0000795 4645 15.48 0.534 0.951 2008-10-15T08:11:11.821397248 INFO 2025-06-26 14:19:01,849 calibrate.py _nudge_pos():1806 [1] 1753: 0.040 0.0001338 0.0000234 9755 32.51 0.610 0.133 2008-10-15T08:44:35.824113920 INFO 2025-06-26 14:19:02,420 calibrate.py _nudge_pos():1806 [1] 1805: 0.060 0.0001483 0.0000192 9765 32.55 0.675 0.109 2008-10-15T09:17:59.816830976 INFO 2025-06-26 14:19:02,984 calibrate.py _nudge_pos():1806 [1] 1858: 0.050 0.0002487 0.0000304 9430 31.43 1.173 0.179 2008-10-15T09:50:17.824068352 INFO 2025-06-26 14:19:03,604 calibrate.py _nudge_pos():1806 [1] 1916: 0.060 0.0002306 0.0000615 9525 31.75 1.076 0.359 2008-10-15T10:22:59.819662336 INFO 2025-06-26 14:19:04,206 calibrate.py _nudge_pos():1806 [1] 1972: 0.060 0.0002265 0.0000249 8875 29.58 1.134 0.156 2008-10-15T10:53:29.824298496 INFO 2025-06-26 14:19:04,810 calibrate.py _nudge_pos():1806 [1] 2029: 0.070 0.0000181 0.0002381 4460 14.86 0.180 2.969 2008-10-15T11:09:17.819356416 INFO 2025-06-26 14:19:05,408 calibrate.py _nudge_pos():1806 [1] 2085: 0.070 0.0010386 0.0000643 2394 7.98 19.280 1.492 2008-10-15T11:18:11.822774528 INFO 2025-06-26 14:19:05,952 calibrate.py _nudge_pos():1806 [1] 2136: 0.070 0.0001521 0.0000699 4970 16.56 1.360 0.782 2008-10-15T11:35:35.821255936 INFO 2025-06-26 14:19:06,539 calibrate.py _nudge_pos():1806 [1] 2191: 0.070 0.0009795 0.0001146 2370 7.90 18.374 2.688 2008-10-15T11:44:23.825085184 INFO 2025-06-26 14:19:07,107 calibrate.py _nudge_pos():1806 [1] 2244: 0.070 -0.0000069 0.0002863 4119 13.73 -0.075 3.864 2008-10-15T11:58:59.825074944 INFO 2025-06-26 14:19:07,703 calibrate.py _nudge_pos():1806 [1] 2300: 0.090 0.0033272 0.0018987 9654 32.18 15.320 10.933 2008-10-15T12:32:05.819025152 INFO 2025-06-26 14:19:08,255 calibrate.py _nudge_pos():1806 [1] 2351: 0.090 0.0045230 0.0020417 11479 38.26 17.520 9.887 2008-10-15T13:11:11.818313216 INFO 2025-06-26 14:19:08,832 calibrate.py _nudge_pos():1806 [1] 2404: 0.090 0.0048411 0.0020356 11830 39.43 18.203 9.566 2008-10-15T13:51:29.822668544 INFO 2025-06-26 14:19:09,443 calibrate.py _nudge_pos():1806 [1] 2460: 0.100 0.0048779 0.0019581 11874 39.58 18.278 9.167 2008-10-15T14:31:59.816202496 INFO 2025-06-26 14:19:10,068 calibrate.py _nudge_pos():1806 [1] 2518: 0.100 0.0001545 -0.0000194 3045 10.15 2.259 -0.354 2008-10-15T14:43:05.820578048 INFO 2025-06-26 14:19:10,715 calibrate.py _nudge_pos():1806 [1] 2578: 0.100 0.0007249 0.0006403 3155 10.51 10.227 11.286 2008-10-15T14:54:35.823309568 INFO 2025-06-26 14:19:13,474 calibrate.py _nudge_pos():1862 [1] 2799: - - - 1 0.00 - - INFO 2025-06-26 14:19:13,474 calibrate.py _nudge_pos():1868 [1] Points in final series = 302644 WARNING 2025-06-26 14:19:13,943 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 14:19:44,041 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 1 of 242292 INFO 2025-06-26 14:19:45,863 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 0 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 14:20:02,920 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 38 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:20:04,704 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 38 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:20:04,708 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2008.288.00/ctd1.nc INFO 2025-06-26 14:20:04,710 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 14:20:04,710 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 14:20:04,710 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 14:20:17,813 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 21 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 14:20:19,599 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 21 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 14:20:19,602 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2008.288.00/ctd2.nc INFO 2025-06-26 14:20:19,604 calibrate.py _range_qc_combined_nc():898 [1] Setting 160 ctd2_salinity values to NaN INFO 2025-06-26 14:20:19,604 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 14:20:19,604 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 14:20:19,757 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 14:20:22,509 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 63 64 65 66 67 68 69 70 71 360 361 362 363 600 601 602 12180 16560 16561 16562 16563 16564 16565 16566 16567 19800 24600 24601 25020 25021 25022 25023 25024 25025 43740 43741 43742 43743 43744 43745 52860 52861 52862 52863 52864 52865 52866 52867 52868 65880 65881 65882 65883 65884 65885 84000 99720 99721 99722 99723 101100 101101 101102 101103 101104 101105 101106 101107 101108 107460 107461 107462 107463 107464 107465 151500 151501 151502 151503 151504 151505 175980 175981 175982 175983 181320 181321 181322 181323 181324 181325 181326 218220 218221 218222 218223 218224 226980 226981 229740 229741 229742 229743 229744 229745 229746 244740 244741 244742 244743 244744 244745 252180 329040 329041 329042 329043 329044 329045 329046 329047 329048 329049 329050 329051 329052 329053 329054 329055 329056 329057 329058 329059 329060 329061 329062 329063 329064 329065 329066 329067 329068 329069 329070 329071 336180 339420 339421 339422 405900 405901 405902 405903 405904 405905 405906 443880 455520 455521 455522 455523 455524 455525 455526 455527 576240 576241 576242 576243 576244 576245 576246 654360 654361 654362 654363 654364 822540 822541 822542 840360 840361 840362 899700 963900 963901 963902 963903 963904 979980 979981 979982 979983 979984 979985 995760 995761 995762 995763 995764 995765 995766 995767 1026060 1114980 1114981 1114982 1130160 1163880 1179000 1179001 1179002 1179003 1179004 1179005 1227060 1227061 1227062 1227063 1227064 1227065 1340700 1340701 1340702 1340703 1340704 1340705 1340706 1340707 1340708 1362060 1475220 1490580 1490581 1490582 1490583 1490584 1490585 1490586 1490587 1563420 1563421 1563422 1563423 1563424 1563425 1563426 1664100 1664101 1664102 1664103 1664104 1664105 1754400 1777260 1777261 1777262 1777263 1873980 1873981 1873982 1873983 2012400 2012401 2012402 2012403 2012404 2012405 2012406 2012407 2012408 2087280 2087281 2087282 2087283 2126280 2126281 2126282 2126283 2259480 2259481 2259482 2259483 2259484 2259485 2264340 2264341 2264342 2264343 2264344 2264345 2264346 2264347 2351100 2351101 2351102 2351103 2469480 2469481 2469482 2469483 2469484 2469485 2469486 2570160 2570161 2570162 2570163 2570164 2570165 2575920 2575921 2575922 2575923 2575924 2575925 2575926 2575927 2575928 2575929 2670840 2670841 2670842 2670843 2754420 2754421 2754422 2754423 2754424 2754425 2800740 2800741 2800742 2872200 2913120 2913121 2913122 2913123 2913124 2913125 2913126 2913127 3137940 3137941 3137942 3137943 3137944 3137945 3137946 3141960 3141961 3141962 3243000 3243001 3243002 3243003 3243004 3243005 3274920 3274921 3274922 3274923 3274924 3274925 3274926 3350520 3350521 3350522 3350523 3350524 3350525 3350526 3360660 3360661 3373620 3373621 3373622 3373623 3373624 3373625 3375600 3375601 3375602 3375603 3375604 3375605 3375606 3386940 3575340 3575341 3575342 3580380 3580381 3580382 3586020] INFO 2025-06-26 14:20:23,041 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -5 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 14:20:23,049 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 14:20:23,049 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2008.288.00 ERROR 2025-06-26 14:20:23,049 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2008.288.00 INFO 2025-06-26 14:20:23,100 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2008.288.00/dorado_2008.288.00_cal.nc INFO 2025-06-26 14:20:41,725 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 14:20:41,731 process.py align():251 [1] Alignment steps for 2008.288.00 INFO 2025-06-26 14:20:41,768 align.py process_cal():139 [1] Processing dorado_2008.288.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2008.288.00 INFO 2025-06-26 14:20:41,849 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:20:41,857 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:20:42,050 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:20:42,062 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:20:42,247 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:20:42,258 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:20:42,376 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 14:20:42,376 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 14:20:42,447 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:20:42,458 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:20:42,640 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2008.288.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:20:42,649 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:20:42,808 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2008.288.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:20:42,817 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:20:42,979 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2008.288.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:20:42,987 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:20:43,147 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.288.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:20:43,156 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:20:43,316 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.288.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:20:43,325 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:20:43,485 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.288.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:20:43,494 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:20:43,658 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.288.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:20:43,667 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:20:43,836 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.288.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:20:43,845 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:20:44,007 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.288.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:20:44,016 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:20:44,176 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.288.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:20:44,187 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:20:44,349 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.288.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:20:44,359 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:20:44,516 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.288.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:20:44,526 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:20:44,687 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.288.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:20:44,696 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:20:44,854 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.288.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:20:44,864 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:20:45,025 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.288.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:20:45,035 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:20:45,194 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.288.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:20:45,203 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:20:45,376 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.288.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:20:45,385 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:20:45,547 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.288.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:20:45,558 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:20:45,723 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.288.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:20:45,732 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:20:45,891 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.288.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:20:45,900 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:20:46,091 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 14:20:46,210 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 14:20:46,332 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 14:20:46,461 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 14:20:46,590 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 1.01 INFO 2025-06-26 14:20:46,626 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2008.288.00/dorado_2008.288.00_align.nc INFO 2025-06-26 14:20:46,762 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 14:20:46,764 process.py resample():273 [1] Resampling steps for 2008.288.00 INFO 2025-06-26 14:20:46,765 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 14:20:46,796 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2008.288.00/dorado_2008.288.00_align.nc mission netCDF file INFO 2025-06-26 14:20:46,803 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2008.288.00/dorado_2008.288.00_align.nc mission netCDF file INFO 2025-06-26 14:20:46,805 resample.py get_mission_start_end():1145 [1] navigation: 2008-10-14T22:09:11.955777536 to 2008-10-15T14:58:49.015964672 (0 days 00:00:00.049996800 before mission_end) INFO 2025-06-26 14:20:46,808 resample.py get_mission_start_end():1145 [1] hs2 : 2008-10-14T22:08:44.767640064 to 2008-10-15T14:58:49.065961472 (0 days 00:00:00 before mission_end) INFO 2025-06-26 14:20:46,810 resample.py get_mission_start_end():1145 [1] ctd1 : 2008-10-14T22:09:22.445059072 to 2008-10-15T14:58:48.975967488 (0 days 00:00:00.089993984 before mission_end) INFO 2025-06-26 14:20:46,813 resample.py get_mission_start_end():1145 [1] ctd2 : 2008-10-14T22:09:05.366228992 to 2008-10-15T14:58:49.065961472 (0 days 00:00:00 before mission_end) INFO 2025-06-26 14:20:46,815 resample.py get_mission_start_end():1145 [1] isus : 2008-10-14T22:09:56.552722432 to 2008-10-15T14:58:48.006033920 (0 days 00:00:01.059927552 before mission_end) INFO 2025-06-26 14:20:46,816 resample.py get_mission_start_end():1145 [1] biolume : 2008-10-14T22:08:38.458038016 to 2008-10-15T14:58:47.926005248 (0 days 00:00:01.139956224 before mission_end) INFO 2025-06-26 14:20:46,818 resample.py get_mission_start_end():1145 [1] tailcone : 2008-10-14T22:08:44.177680384 to 2008-10-15T14:58:48.805979136 (0 days 00:00:00.259982336 before mission_end) INFO 2025-06-26 14:20:46,819 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2008.288.00/dorado_2008.288.00_align.nc mission netCDF file INFO 2025-06-26 14:20:46,819 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:47,435 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:47,535 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:47,632 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:47,728 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:47,809 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:47,892 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:47,972 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:48,054 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:48,129 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:48,204 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:48,279 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:48,354 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:48,428 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:48,503 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:48,579 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:48,654 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:48,732 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:48,814 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:48,899 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:48,978 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:49,058 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:49,136 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:49,166 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:49,192 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:49,216 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:49,246 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:49,276 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 14:20:49,721 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2008.288.00/dorado_2008.288.00_1S.nc INFO 2025-06-26 14:20:52,769 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd2 INFO 2025-06-26 14:21:02,253 create_products.py gulper_odv():522 [1] Wrote 9 Gulper data lines to /data/auv_data/dorado/missionodvs/2008.288.00/dorado_2008.288.00_1S_Gulper.txt INFO 2025-06-26 14:21:02,253 process.py archive():337 [1] Archiving steps for 2008.288.00 INFO 2025-06-26 14:21:02,253 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2008.288.00/dorado_2008.288.00, BASE_PATH = /data/auv_data INFO 2025-06-26 14:21:02,254 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2008.288.00/dorado_2008.288.00 files to /Volumes/AUVCTD/surveys/2008/netcdf INFO 2025-06-26 14:21:02,255 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2008/netcdf/dorado_2008.288.00_1S.nc INFO 2025-06-26 14:21:02,300 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.288.00/dorado_2008.288.00_1S.nc /Volumes/AUVCTD/surveys/2008/netcdf done. INFO 2025-06-26 14:21:02,301 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2008/netcdf/dorado_2008.288.00_cal.nc INFO 2025-06-26 14:21:02,528 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.288.00/dorado_2008.288.00_cal.nc /Volumes/AUVCTD/surveys/2008/netcdf done. INFO 2025-06-26 14:21:02,529 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2008/netcdf/dorado_2008.288.00_align.nc INFO 2025-06-26 14:21:02,713 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.288.00/dorado_2008.288.00_align.nc /Volumes/AUVCTD/surveys/2008/netcdf done. INFO 2025-06-26 14:21:02,775 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.288.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008288/2008.288.00 done. INFO 2025-06-26 14:21:02,830 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.288.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008288/2008.288.00 done. INFO 2025-06-26 14:21:02,836 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.288.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008288/2008.288.00 done. INFO 2025-06-26 14:21:02,892 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.288.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008288/2008.288.00 done. INFO 2025-06-26 14:21:03,068 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.288.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008288/2008.288.00 done. INFO 2025-06-26 14:21:03,077 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.288.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008288/2008.288.00 done. INFO 2025-06-26 14:21:03,143 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.288.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008288/2008.288.00 done. INFO 2025-06-26 14:21:03,157 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.288.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008288/2008.288.00 done. INFO 2025-06-26 14:21:03,309 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.288.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008288/2008.288.00 done. INFO 2025-06-26 14:21:03,316 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.288.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008288/2008.288.00 done. INFO 2025-06-26 14:21:03,316 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 14:21:03,317 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2008/odv/dorado_2008.288.00_1S_Gulper.txt INFO 2025-06-26 14:21:03,322 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2008.288.00/dorado_2008.288.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2008/odv done. INFO 2025-06-26 14:21:03,322 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.288.00/dorado_2008.288.00_processing.log /Volumes/AUVCTD/surveys/2008/netcdf