INFO 2025-06-26 14:14:56,397 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 14:14:56,397 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Autonomy TREX around M0 - CTD2 wasn't pumped, there was a piece of tubing that came off. ctdToUse = ctd1 INFO 2025-06-26 14:14:56,397 process.py process_mission():449 [1] Processing AUVCTD mission 2008.261.02 by user docker_user on host eae60d30a712 INFO 2025-06-26 14:14:56,397 process.py download_process():165 [1] Download and processing steps for 2008.261.02 INFO 2025-06-26 14:14:56,397 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2008/2008261/2008.261.02 INFO 2025-06-26 14:14:56,397 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2008/2008261/2008.261.02 to /data/auv_data/dorado/missionlogs/2008.261.02 INFO 2025-06-26 14:14:58,058 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2008.261.02 INFO 2025-06-26 14:14:58,059 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.261.02/ctdDriver.log (1533708 bytes) INFO 2025-06-26 14:14:58,173 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.261.02/ctdDriver2.log (1535021 bytes) INFO 2025-06-26 14:14:58,287 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.261.02/gps.log (36572 bytes) INFO 2025-06-26 14:14:58,298 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.261.02/hydroscatlog.log (1473634 bytes) INFO 2025-06-26 14:14:58,452 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2008.261.02/hydroscatlog.log: [1] INFO 2025-06-26 14:14:58,457 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.261.02/navigation.log (5146106 bytes) INFO 2025-06-26 14:14:58,838 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.261.02/isuslog.log (101685 bytes) INFO 2025-06-26 14:14:58,852 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.261.02/parosci.log (1594550 bytes) INFO 2025-06-26 14:14:58,984 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2008.261.02/parosci.log: [ 1 16 651 1944 2041 6694 7142 7504 10221 21153 22452 23512 23636 24599 29206] INFO 2025-06-26 14:14:58,988 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.261.02/tailCone.log (216667 bytes) INFO 2025-06-26 14:14:59,022 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.96 seconds INFO 2025-06-26 14:14:59,022 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2008.261.02/lopc.bin (2257697 bytes) INFO 2025-06-26 14:14:59,022 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 14:14:59 2025 INFO 2025-06-26 14:14:59,022 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2008.261.02/parosci.nc INFO 2025-06-26 14:14:59,022 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 14:14:59,022 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2008.261.02/parosci.nc INFO 2025-06-26 14:14:59,024 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1221679050.6, sensor_off_time = 1221683429.4 INFO 2025-06-26 14:14:59,024 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 4378 seconds. Expecting to read 8756 L frames from the lopc.bin file. INFO 2025-06-26 14:14:59,024 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 8756 records from the lopc.bin file. INFO 2025-06-26 14:14:59,076 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2008-09-17 19:17:30 Z and endTime = 2008-09-17 20:30:29 Z with 8756 records expected to be read from lopc.bin INFO 2025-06-26 14:14:59,076 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2008.261.02/lopc.bin INFO 2025-06-26 14:14:59,076 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2008.261.02/lopc.nc INFO 2025-06-26 14:14:59,077 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2008.261.02/lopc.nc INFO 2025-06-26 14:14:59,077 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2008.261.02 INFO 2025-06-26 14:14:59,077 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 14:14:59,110 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 14:14:59,110 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 14:14:59,110 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 14:15:00,291 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 14:15:00,292 process.py calibrate():227 [1] Calibration steps for 2008.261.02 INFO 2025-06-26 14:15:00,374 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 14:15:00,376 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 14:15:00,965 calibrate.py _nudge_pos():1806 [1] 88: 0.070 0.0001001 0.0002417 9170 30.56 0.486 1.466 2008-09-17T19:49:24.138957312 INFO 2025-06-26 14:15:01,226 calibrate.py _nudge_pos():1806 [1] 116: 0.060 -0.0000080 0.0000104 14 0.04 -27.434 44.649 2008-09-17T19:49:54.146901504 INFO 2025-06-26 14:15:01,236 calibrate.py _nudge_pos():1806 [1] 117: 0.070 -0.0000065 -0.0000104 330 1.10 -0.878 -1.750 2008-09-17T19:51:00.142380544 INFO 2025-06-26 14:15:02,716 calibrate.py _nudge_pos():1806 [1] 275: 0.070 0.0024570 0.0007231 9385 31.28 11.651 4.284 2008-09-17T20:24:54.143041792 INFO 2025-06-26 14:15:02,764 calibrate.py _nudge_pos():1806 [1] 280: 0.070 0.0000361 0.0000712 610 2.03 2.636 6.502 2008-09-17T20:27:00.144410368 INFO 2025-06-26 14:15:04,785 calibrate.py _nudge_pos():1862 [1] 464: - - - 0 0.00 - - INFO 2025-06-26 14:15:04,785 calibrate.py _nudge_pos():1868 [1] Points in final series = 21797 WARNING 2025-06-26 14:15:05,335 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 7.69 Hz INFO 2025-06-26 14:15:07,673 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 0 seconds, d_end_time_diff: 5 seconds INFO 2025-06-26 14:15:07,851 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 22 seconds, d_end_time_diff: 5 seconds INFO 2025-06-26 14:15:07,983 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 22 seconds, d_end_time_diff: 5 seconds INFO 2025-06-26 14:15:07,985 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2008.261.02/ctd1.nc INFO 2025-06-26 14:15:07,986 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 14:15:07,987 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 14:15:07,987 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 14:15:08,152 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 21 seconds, d_end_time_diff: 5 seconds INFO 2025-06-26 14:15:08,291 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 21 seconds, d_end_time_diff: 5 seconds INFO 2025-06-26 14:15:08,293 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2008.261.02/ctd2.nc INFO 2025-06-26 14:15:08,294 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 14:15:08,294 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 14:15:08,294 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 14:15:08,303 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2008.261.02 ERROR 2025-06-26 14:15:08,303 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2008.261.02 ERROR 2025-06-26 14:15:08,303 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2008.261.02 INFO 2025-06-26 14:15:08,309 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2008.261.02/dorado_2008.261.02_cal.nc INFO 2025-06-26 14:15:08,357 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 14:15:08,362 process.py align():251 [1] Alignment steps for 2008.261.02 INFO 2025-06-26 14:15:08,384 align.py process_cal():139 [1] Processing dorado_2008.261.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2008.261.02 INFO 2025-06-26 14:15:08,394 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:15:08,397 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:15:08,423 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:15:08,426 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:15:08,448 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:15:08,450 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:15:08,463 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 14:15:08,464 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 14:15:08,472 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:15:08,475 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:15:08,495 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2008.261.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:15:08,498 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:15:08,517 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2008.261.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:15:08,520 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:15:08,541 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2008.261.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:15:08,543 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:15:08,563 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.261.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:15:08,565 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:15:08,584 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.261.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:15:08,586 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:15:08,606 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.261.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:15:08,608 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:15:08,628 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.261.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:15:08,631 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:15:08,651 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.261.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:15:08,653 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:15:08,672 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.261.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:15:08,675 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:15:08,694 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.261.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:15:08,697 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:15:08,718 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.261.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:15:08,720 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:15:08,740 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.261.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:15:08,743 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:15:08,763 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.261.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:15:08,765 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:15:08,787 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.261.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:15:08,789 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:15:08,810 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.261.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:15:08,812 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:15:08,832 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.261.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:15:08,835 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:15:08,855 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.261.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:15:08,858 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:15:08,878 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.261.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:15:08,881 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:15:08,901 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.261.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:15:08,904 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:15:08,924 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.261.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:15:08,926 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:15:08,951 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 14:15:08,971 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 14:15:08,991 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 14:15:09,013 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 1.03 INFO 2025-06-26 14:15:09,025 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2008.261.02/dorado_2008.261.02_align.nc INFO 2025-06-26 14:15:09,070 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 14:15:09,072 process.py resample():273 [1] Resampling steps for 2008.261.02 INFO 2025-06-26 14:15:09,073 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 14:15:09,093 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2008.261.02/dorado_2008.261.02_align.nc mission netCDF file INFO 2025-06-26 14:15:09,097 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2008.261.02/dorado_2008.261.02_align.nc mission netCDF file INFO 2025-06-26 14:15:09,098 resample.py get_mission_start_end():1145 [1] navigation: 2008-09-17T19:17:55.898310656 to 2008-09-17T20:30:35.139682048 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-26 14:15:09,099 resample.py get_mission_start_end():1145 [1] hs2 : 2008-09-17T19:17:30.590044160 to 2008-09-17T20:30:35.189678592 (0 days 00:00:00 before mission_end) INFO 2025-06-26 14:15:09,101 resample.py get_mission_start_end():1145 [1] ctd1 : 2008-09-17T19:17:53.058504960 to 2008-09-17T20:30:35.119683584 (0 days 00:00:00.069995008 before mission_end) INFO 2025-06-26 14:15:09,102 resample.py get_mission_start_end():1145 [1] ctd2 : 2008-09-17T19:17:51.898584576 to 2008-09-17T20:30:35.049688320 (0 days 00:00:00.139990272 before mission_end) INFO 2025-06-26 14:15:09,103 resample.py get_mission_start_end():1145 [1] isus : 2008-09-17T19:18:38.075421440 to 2008-09-17T20:30:34.939695872 (0 days 00:00:00.249982720 before mission_end) INFO 2025-06-26 14:15:09,104 resample.py get_mission_start_end():1145 [1] tailcone : 2008-09-17T19:17:27.220275200 to 2008-09-17T20:30:34.529723904 (0 days 00:00:00.659954688 before mission_end) INFO 2025-06-26 14:15:09,105 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2008.261.02/dorado_2008.261.02_align.nc mission netCDF file INFO 2025-06-26 14:15:09,106 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,175 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,189 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,204 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,218 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,232 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,244 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,257 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,270 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,282 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,293 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,304 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,316 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,327 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,339 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,351 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,362 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,376 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,389 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,402 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,414 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,427 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,440 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,450 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,459 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,468 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,478 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 14:15:09,592 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2008.261.02/dorado_2008.261.02_1S.nc INFO 2025-06-26 14:15:10,330 create_products.py gulper_odv():401 [1] No gulper times found for 2008.261.02 INFO 2025-06-26 14:15:10,330 process.py archive():337 [1] Archiving steps for 2008.261.02 INFO 2025-06-26 14:15:10,330 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2008.261.02/dorado_2008.261.02, BASE_PATH = /data/auv_data INFO 2025-06-26 14:15:10,330 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2008.261.02/dorado_2008.261.02 files to /Volumes/AUVCTD/surveys/2008/netcdf INFO 2025-06-26 14:15:10,332 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2008/netcdf/dorado_2008.261.02_1S.nc INFO 2025-06-26 14:15:10,342 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.02/dorado_2008.261.02_1S.nc /Volumes/AUVCTD/surveys/2008/netcdf done. INFO 2025-06-26 14:15:10,343 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2008/netcdf/dorado_2008.261.02_cal.nc INFO 2025-06-26 14:15:10,366 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.02/dorado_2008.261.02_cal.nc /Volumes/AUVCTD/surveys/2008/netcdf done. INFO 2025-06-26 14:15:10,367 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2008/netcdf/dorado_2008.261.02_align.nc INFO 2025-06-26 14:15:10,387 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.02/dorado_2008.261.02_align.nc /Volumes/AUVCTD/surveys/2008/netcdf done. INFO 2025-06-26 14:15:10,398 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008261/2008.261.02 done. INFO 2025-06-26 14:15:10,407 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008261/2008.261.02 done. INFO 2025-06-26 14:15:10,412 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008261/2008.261.02 done. INFO 2025-06-26 14:15:10,420 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008261/2008.261.02 done. INFO 2025-06-26 14:15:10,438 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008261/2008.261.02 done. INFO 2025-06-26 14:15:10,443 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008261/2008.261.02 done. INFO 2025-06-26 14:15:10,452 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008261/2008.261.02 done. INFO 2025-06-26 14:15:10,458 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008261/2008.261.02 done. INFO 2025-06-26 14:15:10,462 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.02/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008261/2008.261.02 done. INFO 2025-06-26 14:15:10,462 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 14:15:10,462 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.02/dorado_2008.261.02_processing.log /Volumes/AUVCTD/surveys/2008/netcdf