INFO 2025-06-26 14:14:37,249 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 14:14:37,249 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Autonomy TREX around M0 - CTD2 wasn't pumped, there was a piece of tubing that came off. ctdToUse = ctd1 INFO 2025-06-26 14:14:37,249 process.py process_mission():449 [1] Processing AUVCTD mission 2008.261.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 14:14:37,249 process.py download_process():165 [1] Download and processing steps for 2008.261.00 INFO 2025-06-26 14:14:37,249 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2008/2008261/2008.261.00 INFO 2025-06-26 14:14:37,249 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2008/2008261/2008.261.00 to /data/auv_data/dorado/missionlogs/2008.261.00 INFO 2025-06-26 14:14:38,022 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2008.261.00 INFO 2025-06-26 14:14:38,022 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.261.00/ctdDriver.log (43428 bytes) INFO 2025-06-26 14:14:38,032 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.261.00/ctdDriver2.log (43333 bytes) INFO 2025-06-26 14:14:38,043 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.261.00/gps.log (11732 bytes) INFO 2025-06-26 14:14:38,054 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.261.00/hydroscatlog.log (48910 bytes) INFO 2025-06-26 14:14:38,069 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.261.00/navigation.log (139838 bytes) INFO 2025-06-26 14:14:38,093 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.261.00/isuslog.log (1941 bytes) INFO 2025-06-26 14:14:38,096 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.261.00/parosci.log (55718 bytes) INFO 2025-06-26 14:14:38,105 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2008.261.00/parosci.log: [ 48 771] INFO 2025-06-26 14:14:38,106 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.261.00/tailCone.log (8203 bytes) INFO 2025-06-26 14:14:38,112 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.09 seconds INFO 2025-06-26 14:14:38,112 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2008.261.00/lopc.bin (67551 bytes) INFO 2025-06-26 14:14:38,113 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 14:14:38 2025 INFO 2025-06-26 14:14:38,113 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2008.261.00/parosci.nc INFO 2025-06-26 14:14:38,113 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 14:14:38,113 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2008.261.00/parosci.nc INFO 2025-06-26 14:14:38,114 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1221669225.5, sensor_off_time = 1221669367.2 INFO 2025-06-26 14:14:38,114 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 141 seconds. Expecting to read 282 L frames from the lopc.bin file. INFO 2025-06-26 14:14:38,114 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 282 records from the lopc.bin file. INFO 2025-06-26 14:14:38,116 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2008-09-17 16:33:45 Z and endTime = 2008-09-17 16:36:07 Z with 282 records expected to be read from lopc.bin INFO 2025-06-26 14:14:38,116 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2008.261.00/lopc.bin INFO 2025-06-26 14:14:38,116 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2008.261.00/lopc.nc INFO 2025-06-26 14:14:38,116 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2008.261.00/lopc.nc INFO 2025-06-26 14:14:38,117 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2008.261.00 INFO 2025-06-26 14:14:38,117 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 14:14:38,146 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 14:14:38,146 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 14:14:38,146 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-06-26 14:14:38,177 lopcToNetCDF.py main():2345 [1] >>> Done reading file. INFO 2025-06-26 14:14:38,177 lopcToNetCDF.py main():2346 [1] lFrameCount = 220, mFrameCount = 0 INFO 2025-06-26 14:14:38,177 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2008.261.00/parosci.nc INFO 2025-06-26 14:14:38,178 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 14:14:38,178 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2008.261.00/parosci.nc INFO 2025-06-26 14:14:38,179 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1221669225.5, sensor_off_time = 1221669367.2 INFO 2025-06-26 14:14:38,179 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 141 seconds. Expecting to read 282 L frames from the lopc.bin file. INFO 2025-06-26 14:14:38,179 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 282 records from the lopc.bin file. INFO 2025-06-26 14:14:38,179 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 1 and len(sampleCountList) = 221 INFO 2025-06-26 14:14:38,180 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [] INFO 2025-06-26 14:14:38,180 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [ 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 27 28 29 30 31 32 33 34 35 36 37 38 39 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 70 71 72 73 74 75 76 77 78 79 80 81 82 88 89 90 91 92 93 94 95 96 97 98 99 100 106 107 108 109 110 111 112 113 114 115 116 117 118 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 149 150 151 152 153 154 155 156 157 158 159 160 161 167 168 169 170 171 172 173 174 175 176 177 178 179 185 186 187 188 189 190 191 192 193 194 195 196 197 203 204 205 206 207 208 209 210 211 212 213 214 215 221 222 223 224 225 226 227 228 229 230 231 232 233 239 240 241 242 243 244 245 246 247 248 249 250 251 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 282 283 284 285 286 287] INFO 2025-06-26 14:14:38,180 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-26 14:14:38,181 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-26 14:14:38,181 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 1 1 1 1 1] INFO 2025-06-26 14:14:38,182 lopcToNetCDF.py deSpike():1590 [1] Found 0 spike indicators at indices: [] INFO 2025-06-26 14:14:38,182 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [ 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 27 28 29 30 31 32 33 34 35 36 37 38 39 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 70 71 72 73 74 75 76 77 78 79 80 81 82 88 89 90 91 92 93 94 95 96 97 98 99 100 106 107 108 109 110 111 112 113 114 115 116 117 118 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 149 150 151 152 153 154 155 156 157 158 159 160 161 167 168 169 170 171 172 173 174 175 176 177 178 179 185 186 187 188 189 190 191 192 193 194 195 196 197 203 204 205 206 207 208 209 210 211 212 213 214 215 221 222 223 224 225 226 227 228 229 230 231 232 233 239 240 241 242 243 244 245 246 247 248 249 250 251 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 282 283 284 285 286 287] INFO 2025-06-26 14:14:38,182 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [ 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 27 28 29 30 31 32 33 34 35 36 37 38 39 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 70 71 72 73 74 75 76 77 78 79 80 81 82 88 89 90 91 92 93 94 95 96 97 98 99 100 106 107 108 109 110 111 112 113 114 115 116 117 118 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 149 150 151 152 153 154 155 156 157 158 159 160 161 167 168 169 170 171 172 173 174 175 176 177 178 179 185 186 187 188 189 190 191 192 193 194 195 196 197 203 204 205 206 207 208 209 210 211 212 213 214 215 221 222 223 224 225 226 227 228 229 230 231 232 233 239 240 241 242 243 244 245 246 247 248 249 250 251 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 282 283 284 285 286 287] with len(correctedSampleCountList) = 221 INFO 2025-06-26 14:14:38,183 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 1 from all values of correctedSampleCountList INFO 2025-06-26 14:14:38,183 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-26 14:14:38,183 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [ 0. 0.5 1. 1.5 2. 2.5 3. 3.5 4. 4.5 5. 5.5 6. 6.5 7. 7.5 8. 8.5 9. 9.5 10. 10.5 13. 13.5 14. 14.5 15. 15.5 16. 16.5 17. 17.5 18. 18.5 19. 22. 22.5 23. 23.5 24. 24.5 25. 25.5 26. 26.5 27. 27.5 28. 28.5 29. 29.5 30. 30.5 31. 31.5 32. 34.5 35. 35.5 36. 36.5 37. 37.5 38. 38.5 39. 39.5 40. 40.5 43.5 44. 44.5 45. 45.5 46. 46.5 47. 47.5 48. 48.5 49. 49.5 52.5 53. 53.5 54. 54.5 55. 55.5 56. 56.5 57. 57.5 58. 58.5 61.5 62. 62.5 63. 63.5 64. 64.5 65. 65.5 66. 66.5 67. 67.5 68. 68.5 69. 69.5 70. 70.5 71. 71.5 74. 74.5 75. 75.5 76. 76.5 77. 77.5 78. 78.5 79. 79.5 80. 83. 83.5 84. 84.5 85. 85.5 86. 86.5 87. 87.5 88. 88.5 89. 92. 92.5 93. 93.5 94. 94.5 95. 95.5 96. 96.5 97. 97.5 98. 101. 101.5 102. 102.5 103. 103.5 104. 104.5 105. 105.5 106. 106.5 107. 110. 110.5 111. 111.5 112. 112.5 113. 113.5 114. 114.5 115. 115.5 116. 119. 119.5 120. 120.5 121. 121.5 122. 122.5 123. 123.5 124. 124.5 125. 128. 128.5 129. 129.5 130. 130.5 131. 131.5 132. 132.5 133. 133.5 134. 134.5 135. 135.5 136. 136.5 137. 137.5 138. 140.5 141. 141.5 142. 142.5 143. ] INFO 2025-06-26 14:14:38,185 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.22166923e+09 1.22166923e+09 1.22166923e+09 1.22166923e+09 1.22166923e+09 1.22166923e+09 1.22166923e+09 1.22166923e+09 1.22166923e+09 1.22166923e+09 1.22166923e+09 1.22166923e+09 1.22166923e+09 1.22166923e+09 1.22166923e+09 1.22166923e+09 1.22166923e+09 1.22166923e+09 1.22166923e+09 1.22166924e+09 1.22166924e+09 1.22166924e+09 1.22166924e+09 1.22166924e+09 1.22166924e+09 1.22166924e+09 1.22166924e+09 1.22166924e+09 1.22166924e+09 1.22166924e+09 1.22166924e+09 1.22166924e+09 1.22166924e+09 1.22166924e+09 1.22166924e+09 1.22166925e+09 1.22166925e+09 1.22166925e+09 1.22166925e+09 1.22166925e+09 1.22166925e+09 1.22166925e+09 1.22166925e+09 1.22166925e+09 1.22166925e+09 1.22166925e+09 1.22166925e+09 1.22166925e+09 1.22166925e+09 1.22166925e+09 1.22166926e+09 1.22166926e+09 1.22166926e+09 1.22166926e+09 1.22166926e+09 1.22166926e+09 1.22166926e+09 1.22166926e+09 1.22166926e+09 1.22166926e+09 1.22166926e+09 1.22166926e+09 1.22166926e+09 1.22166926e+09 1.22166926e+09 1.22166926e+09 1.22166927e+09 1.22166927e+09 1.22166927e+09 1.22166927e+09 1.22166927e+09 1.22166927e+09 1.22166927e+09 1.22166927e+09 1.22166927e+09 1.22166927e+09 1.22166927e+09 1.22166927e+09 1.22166927e+09 1.22166927e+09 1.22166927e+09 1.22166928e+09 1.22166928e+09 1.22166928e+09 1.22166928e+09 1.22166928e+09 1.22166928e+09 1.22166928e+09 1.22166928e+09 1.22166928e+09 1.22166928e+09 1.22166928e+09 1.22166928e+09 1.22166928e+09 1.22166928e+09 1.22166929e+09 1.22166929e+09 1.22166929e+09 1.22166929e+09 1.22166929e+09 1.22166929e+09 1.22166929e+09 1.22166929e+09 1.22166929e+09 1.22166929e+09 1.22166929e+09 1.22166929e+09 1.22166929e+09 1.22166929e+09 1.22166929e+09 1.22166929e+09 1.22166930e+09 1.22166930e+09 1.22166930e+09 1.22166930e+09 1.22166930e+09 1.22166930e+09 1.22166930e+09 1.22166930e+09 1.22166930e+09 1.22166930e+09 1.22166930e+09 1.22166930e+09 1.22166930e+09 1.22166930e+09 1.22166930e+09 1.22166930e+09 1.22166931e+09 1.22166931e+09 1.22166931e+09 1.22166931e+09 1.22166931e+09 1.22166931e+09 1.22166931e+09 1.22166931e+09 1.22166931e+09 1.22166931e+09 1.22166931e+09 1.22166931e+09 1.22166931e+09 1.22166931e+09 1.22166931e+09 1.22166932e+09 1.22166932e+09 1.22166932e+09 1.22166932e+09 1.22166932e+09 1.22166932e+09 1.22166932e+09 1.22166932e+09 1.22166932e+09 1.22166932e+09 1.22166932e+09 1.22166932e+09 1.22166932e+09 1.22166933e+09 1.22166933e+09 1.22166933e+09 1.22166933e+09 1.22166933e+09 1.22166933e+09 1.22166933e+09 1.22166933e+09 1.22166933e+09 1.22166933e+09 1.22166933e+09 1.22166933e+09 1.22166933e+09 1.22166934e+09 1.22166934e+09 1.22166934e+09 1.22166934e+09 1.22166934e+09 1.22166934e+09 1.22166934e+09 1.22166934e+09 1.22166934e+09 1.22166934e+09 1.22166934e+09 1.22166934e+09 1.22166934e+09 1.22166934e+09 1.22166935e+09 1.22166935e+09 1.22166935e+09 1.22166935e+09 1.22166935e+09 1.22166935e+09 1.22166935e+09 1.22166935e+09 1.22166935e+09 1.22166935e+09 1.22166935e+09 1.22166935e+09 1.22166935e+09 1.22166935e+09 1.22166935e+09 1.22166936e+09 1.22166936e+09 1.22166936e+09 1.22166936e+09 1.22166936e+09 1.22166936e+09 1.22166936e+09 1.22166936e+09 1.22166936e+09 1.22166936e+09 1.22166936e+09 1.22166936e+09 1.22166936e+09 1.22166936e+09 1.22166936e+09 1.22166936e+09 1.22166936e+09 1.22166936e+09 1.22166937e+09 1.22166937e+09 1.22166937e+09 1.22166937e+09 1.22166937e+09 1.22166937e+09] INFO 2025-06-26 14:14:38,187 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1221669225.5 1221669226.0, ..., timestampArray[-2:] = 1221669368.0 1221669368.5] INFO 2025-06-26 14:14:38,187 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1221669225.5331068), np.float64(1221669226.0331068)], ..., timestampList[-2:] = [np.float64(1221669368.0331068), np.float64(1221669368.5331068)]] INFO 2025-06-26 14:14:38,187 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 221) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 14:14:38,187 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [188, 209] INFO 2025-06-26 14:14:38,187 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 10 INFO 2025-06-26 14:14:38,188 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 221 INFO 2025-06-26 14:14:38,188 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1221669225.5331068), np.float64(1221669226.0331068)], ..., timestampList[-2:] = [np.float64(1221669368.0331068), np.float64(1221669368.5331068)]] INFO 2025-06-26 14:14:38,188 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 221) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 14:14:38,188 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(187), np.int32(208)]] from timestampList to create subSampledTimestampList INFO 2025-06-26 14:14:38,188 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 10 INFO 2025-06-26 14:14:38,188 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 ERROR 2025-06-26 14:14:38,188 lopcToNetCDF.py constructTimestampList():1501 [1] Cannot interpolate to cFrameEsecsListInterpolated: array of sample points is empty INFO 2025-06-26 14:14:38,189 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 10 INFO 2025-06-26 14:14:38,189 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1221669235.0331068)], ..., tsList[-2:] = [np.float64(1221669347.5331068), np.float64(1221669360.5331068)] INFO 2025-06-26 14:14:38,189 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2008-09-17 16:33:55 Z INFO 2025-06-26 14:14:38,189 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2008-09-17 16:36:00 Z INFO 2025-06-26 14:14:38,189 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 220 INFO 2025-06-26 14:14:38,189 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [-9999], ..., cFrameEsecsList[-2:] = [-9999, -9999] INFO 2025-06-26 14:14:38,190 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 1969-12-31 21:13:21 Z INFO 2025-06-26 14:14:38,190 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 1969-12-31 21:13:21 Z INFO 2025-06-26 14:14:38,193 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2008.261.00/lopc.nc INFO 2025-06-26 14:14:38,193 lopcToNetCDF.py main():2384 [1] Processing finished: Thu Jun 26 14:14:38 2025 Elapsed processing time from start of processing = 0 seconds INFO 2025-06-26 14:14:38,193 process.py calibrate():227 [1] Calibration steps for 2008.261.00 WARNING 2025-06-26 14:14:38,252 calibrate.py _navigation_process():1588 [1] No positive depths found in 2008.261.00/navigation.nc INFO 2025-06-26 14:14:38,255 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 14:14:38,257 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 14:14:39,414 calibrate.py _nudge_pos():1862 [1] 118: - - - 1 0.00 - - INFO 2025-06-26 14:14:39,414 calibrate.py _nudge_pos():1868 [1] Points in final series = 571 WARNING 2025-06-26 14:14:39,437 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 14:14:39,458 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: -1 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 14:14:39,482 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 20 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 14:14:39,488 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 20 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 14:14:39,489 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2008.261.00/ctd1.nc INFO 2025-06-26 14:14:39,490 calibrate.py _range_qc_combined_nc():898 [1] Setting 486 ctd1_salinity values to NaN INFO 2025-06-26 14:14:39,490 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 14:14:39,490 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 14:14:39,508 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 20 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 14:14:39,514 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 20 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 14:14:39,515 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2008.261.00/ctd2.nc INFO 2025-06-26 14:14:39,516 calibrate.py _range_qc_combined_nc():898 [1] Setting 485 ctd2_salinity values to NaN INFO 2025-06-26 14:14:39,517 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 14:14:39,517 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 14:14:39,522 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2008.261.00 ERROR 2025-06-26 14:14:39,531 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2008.261.00 INFO 2025-06-26 14:14:39,534 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2008.261.00/dorado_2008.261.00_cal.nc INFO 2025-06-26 14:14:39,572 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 14:14:39,577 process.py align():251 [1] Alignment steps for 2008.261.00 INFO 2025-06-26 14:14:39,597 align.py process_cal():139 [1] Processing dorado_2008.261.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2008.261.00 INFO 2025-06-26 14:14:39,601 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:14:39,602 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:14:39,612 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:14:39,613 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:14:39,621 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:14:39,623 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:14:39,627 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 14:14:39,627 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 14:14:39,631 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:14:39,632 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:14:39,640 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2008.261.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:14:39,641 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:14:39,650 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2008.261.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:14:39,652 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:14:39,660 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2008.261.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:14:39,661 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:14:39,669 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:14:39,671 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:14:39,679 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:14:39,681 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:14:39,689 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:14:39,691 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:14:39,699 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:14:39,701 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:14:39,709 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:14:39,710 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:14:39,718 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:14:39,720 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:14:39,728 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:14:39,730 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:14:39,738 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:14:39,740 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:14:39,748 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:14:39,750 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:14:39,758 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:14:39,760 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:14:39,769 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:14:39,771 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:14:39,779 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:14:39,781 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:14:39,790 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:14:39,792 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:14:39,803 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:14:39,805 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:14:39,815 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:14:39,818 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:14:39,827 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:14:39,829 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:14:39,838 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:14:39,839 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:14:39,850 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.71 INFO 2025-06-26 14:14:39,861 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.71 INFO 2025-06-26 14:14:39,872 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.71 INFO 2025-06-26 14:14:39,884 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.07 INFO 2025-06-26 14:14:39,895 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.07 INFO 2025-06-26 14:14:39,907 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.07 INFO 2025-06-26 14:14:39,919 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.07 INFO 2025-06-26 14:14:39,931 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.07 INFO 2025-06-26 14:14:39,943 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 1.10 INFO 2025-06-26 14:14:39,953 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2008.261.00/dorado_2008.261.00_align.nc INFO 2025-06-26 14:14:39,994 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 14:14:39,996 process.py resample():273 [1] Resampling steps for 2008.261.00 INFO 2025-06-26 14:14:39,996 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 14:14:40,018 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2008.261.00/dorado_2008.261.00_align.nc mission netCDF file INFO 2025-06-26 14:14:40,023 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2008.261.00/dorado_2008.261.00_align.nc mission netCDF file INFO 2025-06-26 14:14:40,024 resample.py get_mission_start_end():1145 [1] navigation: 2008-09-17T16:34:10.901368832 to 2008-09-17T16:36:07.433385984 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 14:14:40,025 resample.py get_mission_start_end():1145 [1] hs2 : 2008-09-17T16:33:45.263125504 to 2008-09-17T16:36:07.443385344 (0 days 00:00:00.019998464 before mission_end) INFO 2025-06-26 14:14:40,027 resample.py get_mission_start_end():1145 [1] ctd1 : 2008-09-17T16:34:06.221689344 to 2008-09-17T16:36:07.463383808 (0 days 00:00:00 before mission_end) INFO 2025-06-26 14:14:40,028 resample.py get_mission_start_end():1145 [1] ctd2 : 2008-09-17T16:34:06.441674496 to 2008-09-17T16:36:07.443385344 (0 days 00:00:00.019998464 before mission_end) INFO 2025-06-26 14:14:40,029 resample.py get_mission_start_end():1145 [1] isus : 2008-09-17T16:34:53.748433920 to 2008-09-17T16:36:06.683437312 (0 days 00:00:00.779946496 before mission_end) INFO 2025-06-26 14:14:40,030 resample.py get_mission_start_end():1145 [1] lopc : 2008-09-17T16:33:55.033106688 to 2008-09-17T16:36:00.533106688 (0 days 00:00:06.930277120 before mission_end) INFO 2025-06-26 14:14:40,032 resample.py get_mission_start_end():1145 [1] tailcone : 2008-09-17T16:33:42.753297408 to 2008-09-17T16:36:07.343392256 (0 days 00:00:00.119991552 before mission_end) INFO 2025-06-26 14:14:40,032 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2008.261.00/dorado_2008.261.00_align.nc mission netCDF file INFO 2025-06-26 14:14:40,033 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,061 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,069 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,077 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,084 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,093 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,100 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,108 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,115 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,122 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,130 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,136 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,143 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,150 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,157 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,164 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,170 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,178 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,186 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,194 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,202 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,209 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,216 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,224 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,232 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,239 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,248 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,255 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,263 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,271 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,279 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,287 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 14:14:40,387 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2008.261.00/dorado_2008.261.00_1S.nc INFO 2025-06-26 14:14:40,840 create_products.py gulper_odv():401 [1] No gulper times found for 2008.261.00 INFO 2025-06-26 14:14:40,840 process.py archive():337 [1] Archiving steps for 2008.261.00 INFO 2025-06-26 14:14:40,840 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2008.261.00/dorado_2008.261.00, BASE_PATH = /data/auv_data INFO 2025-06-26 14:14:40,840 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2008.261.00/dorado_2008.261.00 files to /Volumes/AUVCTD/surveys/2008/netcdf INFO 2025-06-26 14:14:40,841 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2008/netcdf/dorado_2008.261.00_1S.nc INFO 2025-06-26 14:14:40,848 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.00/dorado_2008.261.00_1S.nc /Volumes/AUVCTD/surveys/2008/netcdf done. INFO 2025-06-26 14:14:40,849 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2008/netcdf/dorado_2008.261.00_cal.nc INFO 2025-06-26 14:14:40,856 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.00/dorado_2008.261.00_cal.nc /Volumes/AUVCTD/surveys/2008/netcdf done. INFO 2025-06-26 14:14:40,857 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2008/netcdf/dorado_2008.261.00_align.nc INFO 2025-06-26 14:14:40,864 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.00/dorado_2008.261.00_align.nc /Volumes/AUVCTD/surveys/2008/netcdf done. INFO 2025-06-26 14:14:40,870 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008261/2008.261.00 done. INFO 2025-06-26 14:14:40,875 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008261/2008.261.00 done. INFO 2025-06-26 14:14:40,879 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008261/2008.261.00 done. INFO 2025-06-26 14:14:40,883 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008261/2008.261.00 done. INFO 2025-06-26 14:14:40,888 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008261/2008.261.00 done. INFO 2025-06-26 14:14:40,892 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008261/2008.261.00 done. INFO 2025-06-26 14:14:40,896 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008261/2008.261.00 done. INFO 2025-06-26 14:14:40,900 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008261/2008.261.00 done. INFO 2025-06-26 14:14:40,906 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008261/2008.261.00 done. INFO 2025-06-26 14:14:40,906 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 14:14:40,906 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.261.00/dorado_2008.261.00_processing.log /Volumes/AUVCTD/surveys/2008/netcdf