INFO 2025-06-26 14:02:49,006 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 14:02:49,006 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Ryan - ESP inner northern shelf - ctdToUse = ctd1 INFO 2025-06-26 14:02:49,006 process.py process_mission():449 [1] Processing AUVCTD mission 2008.154.01 by user docker_user on host eae60d30a712 INFO 2025-06-26 14:02:49,006 process.py download_process():165 [1] Download and processing steps for 2008.154.01 INFO 2025-06-26 14:02:49,007 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2008/2008154/2008.154.01 INFO 2025-06-26 14:02:49,007 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2008/2008154/2008.154.01 to /data/auv_data/dorado/missionlogs/2008.154.01 INFO 2025-06-26 14:02:56,075 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2008.154.01 INFO 2025-06-26 14:02:56,075 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.154.01/ctdDriver.log (20205372 bytes) INFO 2025-06-26 14:02:57,553 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2008.154.01/ctdDriver.log: [45242 92146] INFO 2025-06-26 14:02:57,613 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.154.01/ctdDriver2.log (20209501 bytes) INFO 2025-06-26 14:02:59,069 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2008.154.01/ctdDriver2.log: [ 8688 45296 55110 58150] INFO 2025-06-26 14:02:59,139 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.154.01/gps.log (267260 bytes) INFO 2025-06-26 14:02:59,175 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.154.01/hydroscatlog.log (13780454 bytes) INFO 2025-06-26 14:03:00,787 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2008.154.01/hydroscatlog.log: [92266 92267] INFO 2025-06-26 14:03:00,831 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.154.01/navigation.log (67749590 bytes) INFO 2025-06-26 14:03:05,717 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.154.01/isuslog.log (1428693 bytes) INFO 2025-06-26 14:03:05,857 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.154.01/parosci.log (24204086 bytes) INFO 2025-06-26 14:03:07,914 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.154.01/tailCone.log (2801083 bytes) INFO 2025-06-26 14:03:08,279 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2008.154.01/biolume.log (15630076 bytes) INFO 2025-06-26 14:03:09,816 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 14:03:10,623 logs2netcdfs.py download_process_logs():807 [1] Time to process: 14.55 seconds INFO 2025-06-26 14:03:10,623 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2008.154.01/lopc.bin (33885185 bytes) INFO 2025-06-26 14:03:10,624 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 14:03:10 2025 INFO 2025-06-26 14:03:10,624 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2008.154.01/parosci.nc INFO 2025-06-26 14:03:10,624 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 14:03:10,624 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2008.154.01/parosci.nc INFO 2025-06-26 14:03:10,627 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1212446160.5, sensor_off_time = 1212503601.5 INFO 2025-06-26 14:03:10,627 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 57441 seconds. Expecting to read 114882 L frames from the lopc.bin file. INFO 2025-06-26 14:03:10,627 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 114882 records from the lopc.bin file. INFO 2025-06-26 14:03:11,320 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2008-06-02 22:36:00 Z and endTime = 2008-06-03 14:33:21 Z with 114882 records expected to be read from lopc.bin INFO 2025-06-26 14:03:11,320 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2008.154.01/lopc.bin INFO 2025-06-26 14:03:11,320 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2008.154.01/lopc.nc INFO 2025-06-26 14:03:11,320 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2008.154.01/lopc.nc INFO 2025-06-26 14:03:11,321 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2008.154.01 INFO 2025-06-26 14:03:11,321 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 14:03:11,407 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 14:03:11,407 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 14:03:11,407 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 14:03:11,555 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 14:03:11,556 process.py calibrate():227 [1] Calibration steps for 2008.154.01 INFO 2025-06-26 14:03:11,960 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 14:03:11,962 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 14:03:12,381 calibrate.py _nudge_pos():1806 [1] 65: 0.110 0.0000650 -0.0000564 60 0.20 49.060 -53.183 2008-06-02T22:37:13.995687424 INFO 2025-06-26 14:03:12,528 calibrate.py _nudge_pos():1806 [1] 80: 0.110 -0.0001661 -0.0000582 15 0.05 -527.856 -231.208 2008-06-02T22:37:30.994523136 INFO 2025-06-26 14:03:12,548 calibrate.py _nudge_pos():1806 [1] 82: 0.120 -0.0019574 0.0012055 6230 20.76 -13.982 10.758 2008-06-02T22:58:17.989097984 INFO 2025-06-26 14:03:13,463 calibrate.py _nudge_pos():1806 [1] 175: 0.120 0.0000156 -0.0002560 3830 12.76 0.182 -3.716 2008-06-02T23:12:35.990320896 INFO 2025-06-26 14:03:13,581 calibrate.py _nudge_pos():1806 [1] 187: 0.120 -0.0000742 -0.0000571 35 0.11 -97.089 -93.364 2008-06-02T23:12:53.989088000 INFO 2025-06-26 14:03:13,758 calibrate.py _nudge_pos():1806 [1] 205: 0.120 0.0000069 -0.0000292 2495 8.31 0.123 -0.650 2008-06-02T23:21:29.993739264 INFO 2025-06-26 14:03:14,159 calibrate.py _nudge_pos():1806 [1] 244: 0.120 0.0001148 0.0001438 4190 13.96 1.219 1.908 2008-06-02T23:36:05.993729024 INFO 2025-06-26 14:03:14,189 calibrate.py _nudge_pos():1806 [1] 247: 0.120 -0.0000036 -0.0000032 15 0.05 -11.479 -12.527 2008-06-02T23:36:10.993386752 INFO 2025-06-26 14:03:14,239 calibrate.py _nudge_pos():1806 [1] 252: 0.120 -0.0000032 -0.0000296 25 0.08 -5.963 -68.480 2008-06-02T23:36:19.992770304 INFO 2025-06-26 14:03:14,357 calibrate.py _nudge_pos():1806 [1] 264: 0.120 0.0000049 -0.0000084 15 0.05 15.426 -33.296 2008-06-02T23:36:33.991811328 INFO 2025-06-26 14:03:14,594 calibrate.py _nudge_pos():1806 [1] 288: 0.120 0.0000065 -0.0000214 15 0.05 20.691 -84.869 2008-06-02T23:36:59.990030080 INFO 2025-06-26 14:03:14,624 calibrate.py _nudge_pos():1806 [1] 291: 0.110 0.0000476 0.0000204 2330 7.76 0.910 0.488 2008-06-02T23:44:47.997969408 INFO 2025-06-26 14:03:14,674 calibrate.py _nudge_pos():1806 [1] 296: 0.120 -0.0000117 -0.0000011 80 0.26 -6.579 -0.780 2008-06-02T23:45:07.996599552 INFO 2025-06-26 14:03:15,116 calibrate.py _nudge_pos():1806 [1] 341: 0.120 0.0000741 -0.0001122 4780 15.93 0.690 -1.305 2008-06-03T00:01:47.998094592 INFO 2025-06-26 14:03:15,325 calibrate.py _nudge_pos():1806 [1] 362: 0.120 0.0001882 0.0000009 9530 31.76 0.879 0.005 2008-06-03T00:33:53.996154880 INFO 2025-06-26 14:03:15,937 calibrate.py _nudge_pos():1806 [1] 424: 0.120 0.0002249 0.0000689 9475 31.58 1.056 0.404 2008-06-03T01:06:29.992159744 INFO 2025-06-26 14:03:16,346 calibrate.py _nudge_pos():1806 [1] 465: 0.130 -0.0000071 0.0000089 15 0.05 -22.693 35.210 2008-06-03T01:07:12.989214464 INFO 2025-06-26 14:03:16,396 calibrate.py _nudge_pos():1806 [1] 470: 0.120 0.0002748 0.0001435 9300 31.00 1.314 0.858 2008-06-03T01:38:17.991452928 INFO 2025-06-26 14:03:16,638 calibrate.py _nudge_pos():1806 [1] 494: 0.130 0.0000281 0.0000228 45 0.15 28.381 28.809 2008-06-03T01:38:49.989260800 INFO 2025-06-26 14:03:16,649 calibrate.py _nudge_pos():1806 [1] 495: 0.120 0.0003157 0.0000440 9470 31.56 1.482 0.258 2008-06-03T02:10:23.989512960 INFO 2025-06-26 14:03:16,972 calibrate.py _nudge_pos():1806 [1] 527: 0.120 0.0000076 -0.0000074 20 0.06 17.844 -21.779 2008-06-03T02:10:58.997114880 INFO 2025-06-26 14:03:17,103 calibrate.py _nudge_pos():1806 [1] 540: 0.130 0.0002078 0.0001166 8195 27.31 1.127 0.791 2008-06-03T02:38:29.994013696 INFO 2025-06-26 14:03:17,174 calibrate.py _nudge_pos():1806 [1] 547: 0.130 0.0000077 0.0000007 75 0.25 4.640 0.556 2008-06-03T02:38:50.992575232 INFO 2025-06-26 14:03:17,462 calibrate.py _nudge_pos():1806 [1] 576: 0.130 0.0000078 0.0001319 4705 15.68 0.074 1.559 2008-06-03T02:54:59.996193792 INFO 2025-06-26 14:03:17,832 calibrate.py _nudge_pos():1806 [1] 613: 0.130 0.0009658 0.0000412 2160 7.20 19.879 1.061 2008-06-03T03:02:47.994134016 INFO 2025-06-26 14:03:18,352 calibrate.py _nudge_pos():1806 [1] 664: 0.130 0.0001637 0.0001248 4340 14.46 1.676 1.599 2008-06-03T03:18:05.991246848 INFO 2025-06-26 14:03:18,633 calibrate.py _nudge_pos():1806 [1] 692: 0.120 0.0009947 0.0000419 2385 7.95 18.542 0.976 2008-06-03T03:26:29.996720128 INFO 2025-06-26 14:03:18,958 calibrate.py _nudge_pos():1806 [1] 724: 0.130 -0.0004882 -0.0006082 5125 17.08 -4.234 -6.598 2008-06-03T03:44:05.994379264 INFO 2025-06-26 14:03:19,431 calibrate.py _nudge_pos():1806 [1] 770: 0.130 0.0029087 0.0015913 9225 30.75 14.018 9.590 2008-06-03T04:15:35.994905344 INFO 2025-06-26 14:03:19,533 calibrate.py _nudge_pos():1806 [1] 780: 0.130 -0.0000105 -0.0001469 40 0.13 -12.020 -209.398 2008-06-03T04:15:52.993740800 INFO 2025-06-26 14:03:19,968 calibrate.py _nudge_pos():1806 [1] 823: 0.130 0.0045024 0.0019282 13175 43.91 15.197 8.136 2008-06-03T05:00:29.990354176 INFO 2025-06-26 14:03:20,452 calibrate.py _nudge_pos():1806 [1] 870: 0.120 0.0045709 0.0017867 11560 38.53 17.589 8.593 2008-06-03T05:39:47.998819328 INFO 2025-06-26 14:03:20,902 calibrate.py _nudge_pos():1806 [1] 914: 0.130 0.0039300 0.0017384 11575 38.58 15.108 8.349 2008-06-03T06:19:05.997285376 INFO 2025-06-26 14:03:20,935 calibrate.py _nudge_pos():1806 [1] 917: 0.130 0.0000811 -0.0000669 45 0.15 82.042 -84.564 2008-06-03T06:19:16.996531968 INFO 2025-06-26 14:03:21,310 calibrate.py _nudge_pos():1806 [1] 953: 0.130 0.0012296 0.0004145 3340 11.13 16.386 6.901 2008-06-03T06:30:59.998373120 INFO 2025-06-26 14:03:21,831 calibrate.py _nudge_pos():1806 [1] 1003: 0.130 -0.0001959 -0.0000211 4375 14.58 -1.993 -0.269 2008-06-03T06:46:23.995075072 INFO 2025-06-26 14:03:22,087 calibrate.py _nudge_pos():1806 [1] 1027: 0.140 0.0000246 -0.0000167 15 0.05 78.118 -66.469 2008-06-03T06:46:50.993225216 INFO 2025-06-26 14:03:22,098 calibrate.py _nudge_pos():1806 [1] 1028: 0.140 -0.0000218 0.0000949 2265 7.55 -0.428 2.330 2008-06-03T06:54:23.992192768 INFO 2025-06-26 14:03:22,513 calibrate.py _nudge_pos():1806 [1] 1068: 0.140 -0.0000829 0.0002046 4695 15.65 -0.786 2.423 2008-06-03T07:10:41.995195136 INFO 2025-06-26 14:03:22,957 calibrate.py _nudge_pos():1806 [1] 1111: 0.130 0.0000365 0.0000309 1740 5.80 0.933 0.988 2008-06-03T07:17:11.998477824 INFO 2025-06-26 14:03:23,441 calibrate.py _nudge_pos():1806 [1] 1158: 0.130 0.0000508 -0.0000784 4145 13.81 0.545 -1.052 2008-06-03T07:31:47.998467840 INFO 2025-06-26 14:03:23,783 calibrate.py _nudge_pos():1806 [1] 1191: 0.140 0.0002237 0.0001759 9590 31.96 1.038 1.020 2008-06-03T08:04:17.994884096 INFO 2025-06-26 14:03:24,486 calibrate.py _nudge_pos():1806 [1] 1259: 0.150 0.0002453 0.0001534 9445 31.48 1.155 0.903 2008-06-03T08:36:53.990888960 INFO 2025-06-26 14:03:24,518 calibrate.py _nudge_pos():1806 [1] 1262: 0.150 0.0000043 -0.0000125 115 0.38 1.658 -6.109 2008-06-03T08:37:18.989176576 INFO 2025-06-26 14:03:25,082 calibrate.py _nudge_pos():1806 [1] 1316: 0.140 0.0002438 0.0001626 9450 31.50 1.147 0.957 2008-06-03T09:09:41.996071680 INFO 2025-06-26 14:03:25,736 calibrate.py _nudge_pos():1806 [1] 1378: 0.150 0.0001716 0.0002483 9265 30.88 0.823 1.490 2008-06-03T09:41:35.994953728 INFO 2025-06-26 14:03:26,353 calibrate.py _nudge_pos():1806 [1] 1437: 0.150 0.0001640 -0.0000035 4990 16.63 1.461 -0.039 2008-06-03T09:59:11.992612864 INFO 2025-06-26 14:03:26,716 calibrate.py _nudge_pos():1806 [1] 1471: 0.150 -0.0001520 0.0002424 5745 19.15 -1.176 2.346 2008-06-03T10:18:53.991640320 INFO 2025-06-26 14:03:27,084 calibrate.py _nudge_pos():1806 [1] 1506: 0.150 0.0009966 0.0000999 2500 8.33 17.722 2.222 2008-06-03T10:27:47.995058432 INFO 2025-06-26 14:03:27,465 calibrate.py _nudge_pos():1806 [1] 1542: 0.150 0.0001541 0.0000173 3935 13.11 1.741 0.244 2008-06-03T10:41:29.998747648 INFO 2025-06-26 14:03:27,887 calibrate.py _nudge_pos():1806 [1] 1582: 0.150 0.0008636 0.0001161 2175 7.25 17.654 2.968 2008-06-03T10:49:23.996276480 INFO 2025-06-26 14:03:28,267 calibrate.py _nudge_pos():1806 [1] 1617: 0.150 -0.0000535 0.0002756 4900 16.33 -0.485 3.127 2008-06-03T11:06:17.996812544 INFO 2025-06-26 14:03:28,697 calibrate.py _nudge_pos():1806 [1] 1658: 0.160 0.0027169 0.0018168 10450 34.83 11.558 9.665 2008-06-03T11:41:47.990898176 INFO 2025-06-26 14:03:29,166 calibrate.py _nudge_pos():1806 [1] 1702: 0.160 0.0043950 0.0021784 13285 44.28 14.711 9.116 2008-06-03T12:26:47.995934976 INFO 2025-06-26 14:03:29,711 calibrate.py _nudge_pos():1806 [1] 1752: 0.170 0.0050183 0.0019852 12415 41.38 17.981 8.890 2008-06-03T13:08:59.992481536 INFO 2025-06-26 14:03:30,064 calibrate.py _nudge_pos():1806 [1] 1785: 0.160 0.0047615 0.0019777 11535 38.45 18.368 9.532 2008-06-03T13:47:59.992180224 INFO 2025-06-26 14:03:30,547 calibrate.py _nudge_pos():1806 [1] 1830: 0.160 0.0016395 0.0002679 4040 13.46 18.062 3.687 2008-06-03T14:02:11.993814272 INFO 2025-06-26 14:03:50,895 calibrate.py _nudge_pos():1862 [1] 3670: - - - 2 0.00 - - INFO 2025-06-26 14:03:50,895 calibrate.py _nudge_pos():1868 [1] Points in final series = 287065 WARNING 2025-06-26 14:03:51,365 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 9.09 Hz INFO 2025-06-26 14:04:20,095 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 73 of 229657 INFO 2025-06-26 14:04:21,871 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 1 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:04:38,122 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 22 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:04:39,848 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 22 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:04:39,852 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2008.154.01/ctd1.nc INFO 2025-06-26 14:04:39,853 calibrate.py _range_qc_combined_nc():898 [1] Setting 25 ctd1_salinity values to NaN INFO 2025-06-26 14:04:39,854 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 14:04:39,854 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 14:04:52,594 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 14 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:04:54,335 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 14 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:04:54,339 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2008.154.01/ctd2.nc INFO 2025-06-26 14:04:54,340 calibrate.py _range_qc_combined_nc():898 [1] Setting 99 ctd2_salinity values to NaN INFO 2025-06-26 14:04:54,341 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 14:04:54,341 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 14:04:54,423 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 14:04:57,098 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 2040 2041 2220 2221 2222 9780 11460 11461 23640 47520 113820 145680 162240 271800 518280 950400 972720 972721 972722 972723 983820 1062240 1122600 1423080 1423081 1423082 1423083 1815780 1815781 1815782 1823820 1823821 1875060 1916460 1968780 2444160 2444161 2444162 2721840 2721841 2721842 2822520 2822521 2828940 2828941 2828942 2923200 3348720 3432540 3432541 3432542] INFO 2025-06-26 14:04:57,617 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -5 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 14:04:57,624 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 14:04:57,625 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2008.154.01 ERROR 2025-06-26 14:04:57,625 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2008.154.01 INFO 2025-06-26 14:04:57,675 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2008.154.01/dorado_2008.154.01_cal.nc INFO 2025-06-26 14:05:15,695 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 14:05:15,700 process.py align():251 [1] Alignment steps for 2008.154.01 INFO 2025-06-26 14:05:15,746 align.py process_cal():139 [1] Processing dorado_2008.154.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2008.154.01 INFO 2025-06-26 14:05:15,828 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:05:15,837 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:05:16,018 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:05:16,028 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:05:16,206 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:05:16,217 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:05:16,326 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 14:05:16,326 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 14:05:16,396 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:05:16,406 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:05:16,581 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2008.154.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:05:16,591 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:05:16,747 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2008.154.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:05:16,756 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:05:16,920 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2008.154.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:05:16,928 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:05:17,085 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.154.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:05:17,094 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:05:17,253 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.154.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:05:17,262 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:05:17,415 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.154.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:05:17,424 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:05:17,579 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.154.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:05:17,588 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:05:17,761 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.154.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:05:17,770 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:05:17,926 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.154.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:05:17,935 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:05:18,091 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.154.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:05:18,100 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:05:18,261 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.154.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:05:18,270 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:05:18,423 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.154.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:05:18,432 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:05:18,598 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2008.154.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:05:18,606 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:05:18,761 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.154.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:05:18,770 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:05:18,925 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.154.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:05:18,934 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:05:19,091 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.154.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:05:19,100 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:05:19,259 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.154.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:05:19,268 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:05:19,438 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.154.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:05:19,450 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:05:19,607 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.154.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:05:19,617 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:05:19,772 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2008.154.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:05:19,781 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:05:19,985 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 14:05:20,107 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 14:05:20,229 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 14:05:20,356 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 14:05:20,481 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 1.02 INFO 2025-06-26 14:05:20,518 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2008.154.01/dorado_2008.154.01_align.nc INFO 2025-06-26 14:05:20,649 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 14:05:20,652 process.py resample():273 [1] Resampling steps for 2008.154.01 INFO 2025-06-26 14:05:20,652 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 14:05:20,683 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2008.154.01/dorado_2008.154.01_align.nc mission netCDF file INFO 2025-06-26 14:05:20,691 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2008.154.01/dorado_2008.154.01_align.nc mission netCDF file INFO 2025-06-26 14:05:20,693 resample.py get_mission_start_end():1145 [1] navigation: 2008-06-02T22:36:28.458807040 to 2008-06-03T14:33:21.395751424 (0 days 00:00:00 before mission_end) INFO 2025-06-26 14:05:20,696 resample.py get_mission_start_end():1145 [1] hs2 : 2008-06-02T22:36:01.550650368 to 2008-06-03T14:33:21.275759616 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 14:05:20,698 resample.py get_mission_start_end():1145 [1] ctd1 : 2008-06-02T22:36:23.009180416 to 2008-06-03T14:33:21.265760512 (0 days 00:00:00.129990912 before mission_end) INFO 2025-06-26 14:05:20,701 resample.py get_mission_start_end():1145 [1] ctd2 : 2008-06-02T22:36:14.869737984 to 2008-06-03T14:33:21.265760512 (0 days 00:00:00.129990912 before mission_end) INFO 2025-06-26 14:05:20,703 resample.py get_mission_start_end():1145 [1] isus : 2008-06-02T22:37:16.535513600 to 2008-06-03T14:33:21.205764608 (0 days 00:00:00.189986816 before mission_end) INFO 2025-06-26 14:05:20,704 resample.py get_mission_start_end():1145 [1] biolume : 2008-06-02T22:35:54.981066240 to 2008-06-03T14:33:20.825756416 (0 days 00:00:00.569995008 before mission_end) INFO 2025-06-26 14:05:20,706 resample.py get_mission_start_end():1145 [1] tailcone : 2008-06-02T22:35:59.810769664 to 2008-06-03T14:33:20.805791744 (0 days 00:00:00.589959680 before mission_end) INFO 2025-06-26 14:05:20,706 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2008.154.01/dorado_2008.154.01_align.nc mission netCDF file INFO 2025-06-26 14:05:20,707 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:21,301 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:21,399 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:21,492 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:21,585 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:21,666 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:21,747 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:21,825 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:21,902 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:21,975 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:22,061 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:22,134 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:22,206 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:22,279 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:22,352 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:22,425 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:22,499 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:22,576 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:22,655 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:22,736 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:22,814 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:22,890 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:22,971 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:23,002 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:23,030 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:23,055 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:23,084 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:23,116 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 14:05:23,532 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2008.154.01/dorado_2008.154.01_1S.nc INFO 2025-06-26 14:05:26,477 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 14:05:37,982 create_products.py gulper_odv():522 [1] Wrote 9 Gulper data lines to /data/auv_data/dorado/missionodvs/2008.154.01/dorado_2008.154.01_1S_Gulper.txt INFO 2025-06-26 14:05:37,983 process.py archive():337 [1] Archiving steps for 2008.154.01 INFO 2025-06-26 14:05:37,983 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2008.154.01/dorado_2008.154.01, BASE_PATH = /data/auv_data INFO 2025-06-26 14:05:37,984 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2008.154.01/dorado_2008.154.01 files to /Volumes/AUVCTD/surveys/2008/netcdf INFO 2025-06-26 14:05:37,985 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2008/netcdf/dorado_2008.154.01_1S.nc INFO 2025-06-26 14:05:38,023 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.154.01/dorado_2008.154.01_1S.nc /Volumes/AUVCTD/surveys/2008/netcdf done. INFO 2025-06-26 14:05:38,024 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2008/netcdf/dorado_2008.154.01_cal.nc INFO 2025-06-26 14:05:38,242 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.154.01/dorado_2008.154.01_cal.nc /Volumes/AUVCTD/surveys/2008/netcdf done. INFO 2025-06-26 14:05:38,243 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2008/netcdf/dorado_2008.154.01_align.nc INFO 2025-06-26 14:05:38,450 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.154.01/dorado_2008.154.01_align.nc /Volumes/AUVCTD/surveys/2008/netcdf done. INFO 2025-06-26 14:05:38,514 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.154.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008154/2008.154.01 done. INFO 2025-06-26 14:05:38,576 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.154.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008154/2008.154.01 done. INFO 2025-06-26 14:05:38,581 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.154.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008154/2008.154.01 done. INFO 2025-06-26 14:05:38,621 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.154.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008154/2008.154.01 done. INFO 2025-06-26 14:05:38,796 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.154.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008154/2008.154.01 done. INFO 2025-06-26 14:05:38,805 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.154.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2008/2008154/2008.154.01 done. 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INFO 2025-06-26 14:05:39,047 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 14:05:39,048 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2008/odv/dorado_2008.154.01_1S_Gulper.txt INFO 2025-06-26 14:05:39,053 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2008.154.01/dorado_2008.154.01_1S_Gulper.txt /Volumes/AUVCTD/surveys/2008/odv done. INFO 2025-06-26 14:05:39,053 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2008.154.01/dorado_2008.154.01_processing.log /Volumes/AUVCTD/surveys/2008/netcdf