INFO 2025-06-26 13:52:01,169 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 13:52:01,169 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Northern shelf then chevron pattern across bay to Monterey - ctdToUse = ctd1 INFO 2025-06-26 13:52:01,169 process.py process_mission():449 [1] Processing BIOLUME mission 2007.346.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 13:52:01,169 process.py download_process():165 [1] Download and processing steps for 2007.346.00 INFO 2025-06-26 13:52:01,169 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2007/2007346/2007.346.00 INFO 2025-06-26 13:52:01,170 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2007/2007346/2007.346.00 to /data/auv_data/dorado/missionlogs/2007.346.00 INFO 2025-06-26 13:52:08,305 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2007.346.00 INFO 2025-06-26 13:52:08,305 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.346.00/ctdDriver.log (26755652 bytes) INFO 2025-06-26 13:52:10,552 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.346.00/ctdDriver2.log (26757053 bytes) INFO 2025-06-26 13:52:12,516 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.346.00/ctdDriver2.log: [36873] INFO 2025-06-26 13:52:12,604 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.346.00/gps.log (228452 bytes) INFO 2025-06-26 13:52:12,638 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.346.00/hydroscatlog.log (18242774 bytes) INFO 2025-06-26 13:52:14,824 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.346.00/hydroscatlog.log: [106772] INFO 2025-06-26 13:52:14,881 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.346.00/navigation.log (89705142 bytes) INFO 2025-06-26 13:52:21,416 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.346.00/isuslog.log (1890581 bytes) INFO 2025-06-26 13:52:21,600 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.346.00/parosci.log (32042342 bytes) INFO 2025-06-26 13:52:24,324 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.346.00/tailCone.log (3708571 bytes) INFO 2025-06-26 13:52:24,780 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.346.00/biolume.log (20691452 bytes) INFO 2025-06-26 13:52:26,745 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 13:52:27,811 logs2netcdfs.py download_process_logs():807 [1] Time to process: 19.51 seconds INFO 2025-06-26 13:52:27,811 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2007.346.00/lopc.bin (40465460 bytes) INFO 2025-06-26 13:52:27,811 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 13:52:27 2025 INFO 2025-06-26 13:52:27,811 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2007.346.00/parosci.nc INFO 2025-06-26 13:52:27,812 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 13:52:27,812 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2007.346.00/parosci.nc INFO 2025-06-26 13:52:27,815 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1197417919.9, sensor_off_time = 1197493967.4 INFO 2025-06-26 13:52:27,815 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 76047 seconds. Expecting to read 152094 L frames from the lopc.bin file. INFO 2025-06-26 13:52:27,815 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 152094 records from the lopc.bin file. INFO 2025-06-26 13:52:28,723 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2007-12-12 00:05:19 Z and endTime = 2007-12-12 21:12:47 Z with 152094 records expected to be read from lopc.bin INFO 2025-06-26 13:52:28,724 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2007.346.00/lopc.bin INFO 2025-06-26 13:52:28,724 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2007.346.00/lopc.nc INFO 2025-06-26 13:52:28,724 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2007.346.00/lopc.nc INFO 2025-06-26 13:52:28,725 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2007.346.00 INFO 2025-06-26 13:52:28,725 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 13:52:28,789 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 13:52:28,790 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 13:52:28,790 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 13:52:29,387 lopcToNetCDF.py main():2340 [1] UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8d in position 0: invalid start byte INFO 2025-06-26 13:52:29,388 lopcToNetCDF.py main():2341 [1] Failed to decode all of lopc.bin - resulting lopc.nc file likely incomplete INFO 2025-06-26 13:52:29,388 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2007.346.00/parosci.nc INFO 2025-06-26 13:52:29,388 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 13:52:29,388 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2007.346.00/parosci.nc INFO 2025-06-26 13:52:29,391 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1197417919.9, sensor_off_time = 1197493967.4 INFO 2025-06-26 13:52:29,391 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 76047 seconds. Expecting to read 152094 L frames from the lopc.bin file. INFO 2025-06-26 13:52:29,391 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 152094 records from the lopc.bin file. INFO 2025-06-26 13:52:29,392 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 1515 and len(sampleCountList) = 831 INFO 2025-06-26 13:52:29,392 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [] INFO 2025-06-26 13:52:29,392 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525 1526 1527 1534 1535 1536 1537 1538 1539 1540 1541 1542 1549 1550 1551 1552 1553 1554 1555 1556 1557 1558 1559 1560 1561 1562 1569 1570 1571 1572 1573 1574 1575 1576 1585 1586 1587 1588 1589 1590 1591 1592 1599 1600 1601 1602 1603 1604 1605 1606 1614 1615 1616 1617 1618 1619 1627 1628 1629 1630 1631 1632 1640 1641 1642 1643 1644 1645 1646 1647 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662 1669 1670 1671 1672 1673 1674 1675 1676 1677 1678 1679 1680 1687 1688 1689 1699 1700 1701 1702 1703 1704 1714 1715 1716 1717 1718 1719 1727 1728 1729 1730 1731 1732 1740 1741 1742 1743 1744 1745 1746 1747 1748 1749 1750 1751 1759 1760 1761 1762 1763 1764 1765 1766 1767 1774 1775 1776 1777 1778 1779 1780 1781 1789 1790 1791 1792 1793 1794 1795 1796 1803 1804 1805 1806 1807 1808 1809 1810 1818 1819 1820 1821 1822 1823 1824 1825 1832 1833 1834 1835 1836 1837 1838 1839 1847 1848 1849 1850 1851 1852 1853 1854 1855 1862 1863 1864 1865 1866 1867 1868 1869 1870 1877 1878 1879 1880 1881 1882 1883 1884 1885 1886 1887 1888 1889 1896 1897 1898 1899 1900 1901 1902 1903 1911 1912 1913 1914 1915 1916 1917 1925 1926 1927 1928 1929 1930 1931 1932 1940 1941 1942 1943 1944 1945 1946 1954 1955 1956 1957 1958 1959 1960 1961 1969 1970 1971 1972 1973 1974 1975 1976 1977 1984 1985 1986 1987 1988 1989 1990 1991 1992 1993 1994 1995 1996 2004 2005 2006 2007 2008 2009 2010 2011 2012 2019 2020 2021 2022 2023 2024 2032 2033 2034 2035 2036 2037 2038 2039 2040 2041 2049 2050 2051 2052 2053 2054 2055 2056 2063 2064 2065 2066 2067 2068 2069 2070 2078 2079 2080 2081 2082 2083 2084 2085 2086 2093 2094 2095 2096 2097 2098 2099 2100 2107 2108 2109 2110 2111 2112 2113 2121 2122 2123 2124 2125 2126 2127 2128 2135 2136 2137 2138 2139 2140 2141 2142 2150 2151 2152 2153 2154 2155 2156 2164 2165 2166 2167 2168 2169 2170 2171 2172 2173 2174 2182 2183 2184 2185 2186 2187 2188 2189 2190 2197 2198 2199 2200 2201 2202 2203 2204 2205 2206 2207 2208 2209 2210 2217 2218 2219 2220 2221 2222 2223 2224 2225 2226 2232 2233 2234 2235 2236 2237 2238 2239 2240 2247 2248 2249 2250 2251 2252 2253 2254 2255 2256 2257 2258 2266 2267 2268 2269 2270 2271 2272 2273 2274 2281 2282 2283 2284 2285 2286 2287 2288 2289 2290 2296 2297 2298 2299 2300 2301 2302 2303 2304 2311 2312 2313 2314 2315 2316 2317 2318 2319 2326 2327 2328 2329 2330 2331 2332 2333 2341 2342 2343 2344 2345 2346 2347 2355 2356 2357 2358 2359 2360 2361 2368 2369 2370 2371 2372 2373 2374 2375 2376 2383 2384 2385 2386 2387 2388 2396 2397 2398 2399 2400 2401 2402 2403 2404 2405 2413 2414 2415 2416 2417 2418 2419 2427 2428 2429 2430 2431 2432 2433 2434 2442 2443 2444 2445 2446 2447 2448 2449 2450 2457 2458 2459 2460 2461 2462 2463 2464 2471 2472 2473 2474 2475 2476 2477 2478 2486 2487 2488 2489 2490 2491 2492 2493 2501 2502 2503 2504 2505 2506 2507 2508 2509 2518 2519 2520 2521 2522 2523 2531 2532 2533 2534 2535 2545 2546 2547 2548 2549 2558 2559 2560 2561 2562 2563 2564 2565 2566 2567 2568 2576 2577 2578 2579 2580 2581 2590 2591 2592 2593 2594 2595 2596 2604 2605 2606 2607 2608 2609 2610 2618 2619 2620 2621 2622 2623 2624 2632 2633 2634 2635 2636 2637 2638 2646 2647 2648 2649 2650 2651 2652 2660 2661 2662 2663 2664 2665 2666 2667 2674 2675 2676 2677 2678 2679 2680 2681 2682 2689 2690 2691 2692 2693 2694 2695 2696 2697 2698 2704 2705 2706 2707 2708 2709 2710 2711 2712 2713 2720 2721 2722 2723 2724 2725 2726 2727 2728 2729 2730 2731 2732 2739 2740 2741 2742 2743 2744 2745 2746 2747 2754 2755 2756 2757 2758 2759 2767 2768 2769 2770 2771 2772 2773 2781 2782 2783 2784 2785 2786 2787 2788 2789 2790 2798 2799 2800 2801 2802 2803 2804 2811 2812 2813 2814 2815 2816 2817 2818 2819 2820 2821 2822 2830 2831 2832 2833 2834 2835 2843 2844 2845 2846 2847 2848 2849 2857 2858 2859 2860 2861 2862 2863 2871 2872 2873 2874 2875 2876 2877 2878 2885 2886 2887 2888 2889 2890 2891 2892 2893 2894 2895 2896 2897 2898 2905 2906 2907 2908 2909 2910 2911 2912 2913 2914 2920 2921 2922 2923 2924 2925 2926 2927 2928 2935 2936 2937 2938 2939 2940 2941 2949 2950 2951 2952 2953 2954 2955 2956 2957 2958 2959 2966 2967 2968 2969 2970 2971 2972 2980 2981 2982 2983 2984 2985 2986] INFO 2025-06-26 13:52:29,396 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-26 13:52:29,396 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-26 13:52:29,396 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [ 1 1 1 1 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 9 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 8 1 1 1 1 1 8 1 1 1 1 1 8 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 1 1 1 1 7 1 1 10 1 1 1 1 1 10 1 1 1 1 1 8 1 1 1 1 1 8 1 1 1 1 1 1 1 1 1 1 1 8 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 8 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 8 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 8 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 8 1 1 1 1 1 1 8 1 1 1 1 1 1 1 8 1 1 1 1 1 1 8 1 1 1 1 1 1 1 8 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 1 1 1 1 1 8 1 1 1 1 1 1 1 1 7 1 1 1 1 1 8 1 1 1 1 1 1 1 1 1 8 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 8 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 7 1 1 1 1 1 1 8 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 8 1 1 1 1 1 1 8 1 1 1 1 1 1 1 1 1 1 8 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 1 1 1 1 8 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 8 1 1 1 1 1 1 8 1 1 1 1 1 1 7 1 1 1 1 1 1 1 1 7 1 1 1 1 1 8 1 1 1 1 1 1 1 1 1 8 1 1 1 1 1 1 8 1 1 1 1 1 1 1 8 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 8 1 1 1 1 1 1 1 8 1 1 1 1 1 1 1 1 9 1 1 1 1 1 8 1 1 1 1 10 1 1 1 1 9 1 1 1 1 1 1 1 1 1 1 8 1 1 1 1 1 9 1 1 1 1 1 1 8 1 1 1 1 1 1 8 1 1 1 1 1 1 8 1 1 1 1 1 1 8 1 1 1 1 1 1 8 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 1 7 1 1 1 1 1 8 1 1 1 1 1 1 8 1 1 1 1 1 1 1 1 1 8 1 1 1 1 1 1 7 1 1 1 1 1 1 1 1 1 1 1 8 1 1 1 1 1 8 1 1 1 1 1 1 8 1 1 1 1 1 1 8 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 8 1 1 1 1 1 1 1 1 1 1 7 1 1 1 1 1 1 8 1 1 1 1 1 1] INFO 2025-06-26 13:52:29,401 lopcToNetCDF.py deSpike():1590 [1] Found 0 spike indicators at indices: [] INFO 2025-06-26 13:52:29,402 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525 1526 1527 1534 1535 1536 1537 1538 1539 1540 1541 1542 1549 1550 1551 1552 1553 1554 1555 1556 1557 1558 1559 1560 1561 1562 1569 1570 1571 1572 1573 1574 1575 1576 1585 1586 1587 1588 1589 1590 1591 1592 1599 1600 1601 1602 1603 1604 1605 1606 1614 1615 1616 1617 1618 1619 1627 1628 1629 1630 1631 1632 1640 1641 1642 1643 1644 1645 1646 1647 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662 1669 1670 1671 1672 1673 1674 1675 1676 1677 1678 1679 1680 1687 1688 1689 1699 1700 1701 1702 1703 1704 1714 1715 1716 1717 1718 1719 1727 1728 1729 1730 1731 1732 1740 1741 1742 1743 1744 1745 1746 1747 1748 1749 1750 1751 1759 1760 1761 1762 1763 1764 1765 1766 1767 1774 1775 1776 1777 1778 1779 1780 1781 1789 1790 1791 1792 1793 1794 1795 1796 1803 1804 1805 1806 1807 1808 1809 1810 1818 1819 1820 1821 1822 1823 1824 1825 1832 1833 1834 1835 1836 1837 1838 1839 1847 1848 1849 1850 1851 1852 1853 1854 1855 1862 1863 1864 1865 1866 1867 1868 1869 1870 1877 1878 1879 1880 1881 1882 1883 1884 1885 1886 1887 1888 1889 1896 1897 1898 1899 1900 1901 1902 1903 1911 1912 1913 1914 1915 1916 1917 1925 1926 1927 1928 1929 1930 1931 1932 1940 1941 1942 1943 1944 1945 1946 1954 1955 1956 1957 1958 1959 1960 1961 1969 1970 1971 1972 1973 1974 1975 1976 1977 1984 1985 1986 1987 1988 1989 1990 1991 1992 1993 1994 1995 1996 2004 2005 2006 2007 2008 2009 2010 2011 2012 2019 2020 2021 2022 2023 2024 2032 2033 2034 2035 2036 2037 2038 2039 2040 2041 2049 2050 2051 2052 2053 2054 2055 2056 2063 2064 2065 2066 2067 2068 2069 2070 2078 2079 2080 2081 2082 2083 2084 2085 2086 2093 2094 2095 2096 2097 2098 2099 2100 2107 2108 2109 2110 2111 2112 2113 2121 2122 2123 2124 2125 2126 2127 2128 2135 2136 2137 2138 2139 2140 2141 2142 2150 2151 2152 2153 2154 2155 2156 2164 2165 2166 2167 2168 2169 2170 2171 2172 2173 2174 2182 2183 2184 2185 2186 2187 2188 2189 2190 2197 2198 2199 2200 2201 2202 2203 2204 2205 2206 2207 2208 2209 2210 2217 2218 2219 2220 2221 2222 2223 2224 2225 2226 2232 2233 2234 2235 2236 2237 2238 2239 2240 2247 2248 2249 2250 2251 2252 2253 2254 2255 2256 2257 2258 2266 2267 2268 2269 2270 2271 2272 2273 2274 2281 2282 2283 2284 2285 2286 2287 2288 2289 2290 2296 2297 2298 2299 2300 2301 2302 2303 2304 2311 2312 2313 2314 2315 2316 2317 2318 2319 2326 2327 2328 2329 2330 2331 2332 2333 2341 2342 2343 2344 2345 2346 2347 2355 2356 2357 2358 2359 2360 2361 2368 2369 2370 2371 2372 2373 2374 2375 2376 2383 2384 2385 2386 2387 2388 2396 2397 2398 2399 2400 2401 2402 2403 2404 2405 2413 2414 2415 2416 2417 2418 2419 2427 2428 2429 2430 2431 2432 2433 2434 2442 2443 2444 2445 2446 2447 2448 2449 2450 2457 2458 2459 2460 2461 2462 2463 2464 2471 2472 2473 2474 2475 2476 2477 2478 2486 2487 2488 2489 2490 2491 2492 2493 2501 2502 2503 2504 2505 2506 2507 2508 2509 2518 2519 2520 2521 2522 2523 2531 2532 2533 2534 2535 2545 2546 2547 2548 2549 2558 2559 2560 2561 2562 2563 2564 2565 2566 2567 2568 2576 2577 2578 2579 2580 2581 2590 2591 2592 2593 2594 2595 2596 2604 2605 2606 2607 2608 2609 2610 2618 2619 2620 2621 2622 2623 2624 2632 2633 2634 2635 2636 2637 2638 2646 2647 2648 2649 2650 2651 2652 2660 2661 2662 2663 2664 2665 2666 2667 2674 2675 2676 2677 2678 2679 2680 2681 2682 2689 2690 2691 2692 2693 2694 2695 2696 2697 2698 2704 2705 2706 2707 2708 2709 2710 2711 2712 2713 2720 2721 2722 2723 2724 2725 2726 2727 2728 2729 2730 2731 2732 2739 2740 2741 2742 2743 2744 2745 2746 2747 2754 2755 2756 2757 2758 2759 2767 2768 2769 2770 2771 2772 2773 2781 2782 2783 2784 2785 2786 2787 2788 2789 2790 2798 2799 2800 2801 2802 2803 2804 2811 2812 2813 2814 2815 2816 2817 2818 2819 2820 2821 2822 2830 2831 2832 2833 2834 2835 2843 2844 2845 2846 2847 2848 2849 2857 2858 2859 2860 2861 2862 2863 2871 2872 2873 2874 2875 2876 2877 2878 2885 2886 2887 2888 2889 2890 2891 2892 2893 2894 2895 2896 2897 2898 2905 2906 2907 2908 2909 2910 2911 2912 2913 2914 2920 2921 2922 2923 2924 2925 2926 2927 2928 2935 2936 2937 2938 2939 2940 2941 2949 2950 2951 2952 2953 2954 2955 2956 2957 2958 2959 2966 2967 2968 2969 2970 2971 2972 2980 2981 2982 2983 2984 2985 2986] INFO 2025-06-26 13:52:29,407 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525 1526 1527 1534 1535 1536 1537 1538 1539 1540 1541 1542 1549 1550 1551 1552 1553 1554 1555 1556 1557 1558 1559 1560 1561 1562 1569 1570 1571 1572 1573 1574 1575 1576 1585 1586 1587 1588 1589 1590 1591 1592 1599 1600 1601 1602 1603 1604 1605 1606 1614 1615 1616 1617 1618 1619 1627 1628 1629 1630 1631 1632 1640 1641 1642 1643 1644 1645 1646 1647 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662 1669 1670 1671 1672 1673 1674 1675 1676 1677 1678 1679 1680 1687 1688 1689 1699 1700 1701 1702 1703 1704 1714 1715 1716 1717 1718 1719 1727 1728 1729 1730 1731 1732 1740 1741 1742 1743 1744 1745 1746 1747 1748 1749 1750 1751 1759 1760 1761 1762 1763 1764 1765 1766 1767 1774 1775 1776 1777 1778 1779 1780 1781 1789 1790 1791 1792 1793 1794 1795 1796 1803 1804 1805 1806 1807 1808 1809 1810 1818 1819 1820 1821 1822 1823 1824 1825 1832 1833 1834 1835 1836 1837 1838 1839 1847 1848 1849 1850 1851 1852 1853 1854 1855 1862 1863 1864 1865 1866 1867 1868 1869 1870 1877 1878 1879 1880 1881 1882 1883 1884 1885 1886 1887 1888 1889 1896 1897 1898 1899 1900 1901 1902 1903 1911 1912 1913 1914 1915 1916 1917 1925 1926 1927 1928 1929 1930 1931 1932 1940 1941 1942 1943 1944 1945 1946 1954 1955 1956 1957 1958 1959 1960 1961 1969 1970 1971 1972 1973 1974 1975 1976 1977 1984 1985 1986 1987 1988 1989 1990 1991 1992 1993 1994 1995 1996 2004 2005 2006 2007 2008 2009 2010 2011 2012 2019 2020 2021 2022 2023 2024 2032 2033 2034 2035 2036 2037 2038 2039 2040 2041 2049 2050 2051 2052 2053 2054 2055 2056 2063 2064 2065 2066 2067 2068 2069 2070 2078 2079 2080 2081 2082 2083 2084 2085 2086 2093 2094 2095 2096 2097 2098 2099 2100 2107 2108 2109 2110 2111 2112 2113 2121 2122 2123 2124 2125 2126 2127 2128 2135 2136 2137 2138 2139 2140 2141 2142 2150 2151 2152 2153 2154 2155 2156 2164 2165 2166 2167 2168 2169 2170 2171 2172 2173 2174 2182 2183 2184 2185 2186 2187 2188 2189 2190 2197 2198 2199 2200 2201 2202 2203 2204 2205 2206 2207 2208 2209 2210 2217 2218 2219 2220 2221 2222 2223 2224 2225 2226 2232 2233 2234 2235 2236 2237 2238 2239 2240 2247 2248 2249 2250 2251 2252 2253 2254 2255 2256 2257 2258 2266 2267 2268 2269 2270 2271 2272 2273 2274 2281 2282 2283 2284 2285 2286 2287 2288 2289 2290 2296 2297 2298 2299 2300 2301 2302 2303 2304 2311 2312 2313 2314 2315 2316 2317 2318 2319 2326 2327 2328 2329 2330 2331 2332 2333 2341 2342 2343 2344 2345 2346 2347 2355 2356 2357 2358 2359 2360 2361 2368 2369 2370 2371 2372 2373 2374 2375 2376 2383 2384 2385 2386 2387 2388 2396 2397 2398 2399 2400 2401 2402 2403 2404 2405 2413 2414 2415 2416 2417 2418 2419 2427 2428 2429 2430 2431 2432 2433 2434 2442 2443 2444 2445 2446 2447 2448 2449 2450 2457 2458 2459 2460 2461 2462 2463 2464 2471 2472 2473 2474 2475 2476 2477 2478 2486 2487 2488 2489 2490 2491 2492 2493 2501 2502 2503 2504 2505 2506 2507 2508 2509 2518 2519 2520 2521 2522 2523 2531 2532 2533 2534 2535 2545 2546 2547 2548 2549 2558 2559 2560 2561 2562 2563 2564 2565 2566 2567 2568 2576 2577 2578 2579 2580 2581 2590 2591 2592 2593 2594 2595 2596 2604 2605 2606 2607 2608 2609 2610 2618 2619 2620 2621 2622 2623 2624 2632 2633 2634 2635 2636 2637 2638 2646 2647 2648 2649 2650 2651 2652 2660 2661 2662 2663 2664 2665 2666 2667 2674 2675 2676 2677 2678 2679 2680 2681 2682 2689 2690 2691 2692 2693 2694 2695 2696 2697 2698 2704 2705 2706 2707 2708 2709 2710 2711 2712 2713 2720 2721 2722 2723 2724 2725 2726 2727 2728 2729 2730 2731 2732 2739 2740 2741 2742 2743 2744 2745 2746 2747 2754 2755 2756 2757 2758 2759 2767 2768 2769 2770 2771 2772 2773 2781 2782 2783 2784 2785 2786 2787 2788 2789 2790 2798 2799 2800 2801 2802 2803 2804 2811 2812 2813 2814 2815 2816 2817 2818 2819 2820 2821 2822 2830 2831 2832 2833 2834 2835 2843 2844 2845 2846 2847 2848 2849 2857 2858 2859 2860 2861 2862 2863 2871 2872 2873 2874 2875 2876 2877 2878 2885 2886 2887 2888 2889 2890 2891 2892 2893 2894 2895 2896 2897 2898 2905 2906 2907 2908 2909 2910 2911 2912 2913 2914 2920 2921 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2.200e+01 2.250e+01 2.300e+01 2.350e+01 2.700e+01 2.750e+01 2.800e+01 2.850e+01 2.900e+01 2.950e+01 3.000e+01 3.050e+01 3.500e+01 3.550e+01 3.600e+01 3.650e+01 3.700e+01 3.750e+01 3.800e+01 3.850e+01 4.200e+01 4.250e+01 4.300e+01 4.350e+01 4.400e+01 4.450e+01 4.500e+01 4.550e+01 4.950e+01 5.000e+01 5.050e+01 5.100e+01 5.150e+01 5.200e+01 5.600e+01 5.650e+01 5.700e+01 5.750e+01 5.800e+01 5.850e+01 6.250e+01 6.300e+01 6.350e+01 6.400e+01 6.450e+01 6.500e+01 6.550e+01 6.600e+01 6.900e+01 6.950e+01 7.000e+01 7.050e+01 7.100e+01 7.150e+01 7.200e+01 7.250e+01 7.300e+01 7.350e+01 7.700e+01 7.750e+01 7.800e+01 7.850e+01 7.900e+01 7.950e+01 8.000e+01 8.050e+01 8.100e+01 8.150e+01 8.200e+01 8.250e+01 8.600e+01 8.650e+01 8.700e+01 9.200e+01 9.250e+01 9.300e+01 9.350e+01 9.400e+01 9.450e+01 9.950e+01 1.000e+02 1.005e+02 1.010e+02 1.015e+02 1.020e+02 1.060e+02 1.065e+02 1.070e+02 1.075e+02 1.080e+02 1.085e+02 1.125e+02 1.130e+02 1.135e+02 1.140e+02 1.145e+02 1.150e+02 1.155e+02 1.160e+02 1.165e+02 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2.925e+02 2.960e+02 2.965e+02 2.970e+02 2.975e+02 2.980e+02 2.985e+02 2.990e+02 3.030e+02 3.035e+02 3.040e+02 3.045e+02 3.050e+02 3.055e+02 3.060e+02 3.065e+02 3.100e+02 3.105e+02 3.110e+02 3.115e+02 3.120e+02 3.125e+02 3.130e+02 3.135e+02 3.175e+02 3.180e+02 3.185e+02 3.190e+02 3.195e+02 3.200e+02 3.205e+02 3.245e+02 3.250e+02 3.255e+02 3.260e+02 3.265e+02 3.270e+02 3.275e+02 3.280e+02 3.285e+02 3.290e+02 3.295e+02 3.335e+02 3.340e+02 3.345e+02 3.350e+02 3.355e+02 3.360e+02 3.365e+02 3.370e+02 3.375e+02 3.410e+02 3.415e+02 3.420e+02 3.425e+02 3.430e+02 3.435e+02 3.440e+02 3.445e+02 3.450e+02 3.455e+02 3.460e+02 3.465e+02 3.470e+02 3.475e+02 3.510e+02 3.515e+02 3.520e+02 3.525e+02 3.530e+02 3.535e+02 3.540e+02 3.545e+02 3.550e+02 3.555e+02 3.585e+02 3.590e+02 3.595e+02 3.600e+02 3.605e+02 3.610e+02 3.615e+02 3.620e+02 3.625e+02 3.660e+02 3.665e+02 3.670e+02 3.675e+02 3.680e+02 3.685e+02 3.690e+02 3.695e+02 3.700e+02 3.705e+02 3.710e+02 3.715e+02 3.755e+02 3.760e+02 3.765e+02 3.770e+02 3.775e+02 3.780e+02 3.785e+02 3.790e+02 3.795e+02 3.830e+02 3.835e+02 3.840e+02 3.845e+02 3.850e+02 3.855e+02 3.860e+02 3.865e+02 3.870e+02 3.875e+02 3.905e+02 3.910e+02 3.915e+02 3.920e+02 3.925e+02 3.930e+02 3.935e+02 3.940e+02 3.945e+02 3.980e+02 3.985e+02 3.990e+02 3.995e+02 4.000e+02 4.005e+02 4.010e+02 4.015e+02 4.020e+02 4.055e+02 4.060e+02 4.065e+02 4.070e+02 4.075e+02 4.080e+02 4.085e+02 4.090e+02 4.130e+02 4.135e+02 4.140e+02 4.145e+02 4.150e+02 4.155e+02 4.160e+02 4.200e+02 4.205e+02 4.210e+02 4.215e+02 4.220e+02 4.225e+02 4.230e+02 4.265e+02 4.270e+02 4.275e+02 4.280e+02 4.285e+02 4.290e+02 4.295e+02 4.300e+02 4.305e+02 4.340e+02 4.345e+02 4.350e+02 4.355e+02 4.360e+02 4.365e+02 4.405e+02 4.410e+02 4.415e+02 4.420e+02 4.425e+02 4.430e+02 4.435e+02 4.440e+02 4.445e+02 4.450e+02 4.490e+02 4.495e+02 4.500e+02 4.505e+02 4.510e+02 4.515e+02 4.520e+02 4.560e+02 4.565e+02 4.570e+02 4.575e+02 4.580e+02 4.585e+02 4.590e+02 4.595e+02 4.635e+02 4.640e+02 4.645e+02 4.650e+02 4.655e+02 4.660e+02 4.665e+02 4.670e+02 4.675e+02 4.710e+02 4.715e+02 4.720e+02 4.725e+02 4.730e+02 4.735e+02 4.740e+02 4.745e+02 4.780e+02 4.785e+02 4.790e+02 4.795e+02 4.800e+02 4.805e+02 4.810e+02 4.815e+02 4.855e+02 4.860e+02 4.865e+02 4.870e+02 4.875e+02 4.880e+02 4.885e+02 4.890e+02 4.930e+02 4.935e+02 4.940e+02 4.945e+02 4.950e+02 4.955e+02 4.960e+02 4.965e+02 4.970e+02 5.015e+02 5.020e+02 5.025e+02 5.030e+02 5.035e+02 5.040e+02 5.080e+02 5.085e+02 5.090e+02 5.095e+02 5.100e+02 5.150e+02 5.155e+02 5.160e+02 5.165e+02 5.170e+02 5.215e+02 5.220e+02 5.225e+02 5.230e+02 5.235e+02 5.240e+02 5.245e+02 5.250e+02 5.255e+02 5.260e+02 5.265e+02 5.305e+02 5.310e+02 5.315e+02 5.320e+02 5.325e+02 5.330e+02 5.375e+02 5.380e+02 5.385e+02 5.390e+02 5.395e+02 5.400e+02 5.405e+02 5.445e+02 5.450e+02 5.455e+02 5.460e+02 5.465e+02 5.470e+02 5.475e+02 5.515e+02 5.520e+02 5.525e+02 5.530e+02 5.535e+02 5.540e+02 5.545e+02 5.585e+02 5.590e+02 5.595e+02 5.600e+02 5.605e+02 5.610e+02 5.615e+02 5.655e+02 5.660e+02 5.665e+02 5.670e+02 5.675e+02 5.680e+02 5.685e+02 5.725e+02 5.730e+02 5.735e+02 5.740e+02 5.745e+02 5.750e+02 5.755e+02 5.760e+02 5.795e+02 5.800e+02 5.805e+02 5.810e+02 5.815e+02 5.820e+02 5.825e+02 5.830e+02 5.835e+02 5.870e+02 5.875e+02 5.880e+02 5.885e+02 5.890e+02 5.895e+02 5.900e+02 5.905e+02 5.910e+02 5.915e+02 5.945e+02 5.950e+02 5.955e+02 5.960e+02 5.965e+02 5.970e+02 5.975e+02 5.980e+02 5.985e+02 5.990e+02 6.025e+02 6.030e+02 6.035e+02 6.040e+02 6.045e+02 6.050e+02 6.055e+02 6.060e+02 6.065e+02 6.070e+02 6.075e+02 6.080e+02 6.085e+02 6.120e+02 6.125e+02 6.130e+02 6.135e+02 6.140e+02 6.145e+02 6.150e+02 6.155e+02 6.160e+02 6.195e+02 6.200e+02 6.205e+02 6.210e+02 6.215e+02 6.220e+02 6.260e+02 6.265e+02 6.270e+02 6.275e+02 6.280e+02 6.285e+02 6.290e+02 6.330e+02 6.335e+02 6.340e+02 6.345e+02 6.350e+02 6.355e+02 6.360e+02 6.365e+02 6.370e+02 6.375e+02 6.415e+02 6.420e+02 6.425e+02 6.430e+02 6.435e+02 6.440e+02 6.445e+02 6.480e+02 6.485e+02 6.490e+02 6.495e+02 6.500e+02 6.505e+02 6.510e+02 6.515e+02 6.520e+02 6.525e+02 6.530e+02 6.535e+02 6.575e+02 6.580e+02 6.585e+02 6.590e+02 6.595e+02 6.600e+02 6.640e+02 6.645e+02 6.650e+02 6.655e+02 6.660e+02 6.665e+02 6.670e+02 6.710e+02 6.715e+02 6.720e+02 6.725e+02 6.730e+02 6.735e+02 6.740e+02 6.780e+02 6.785e+02 6.790e+02 6.795e+02 6.800e+02 6.805e+02 6.810e+02 6.815e+02 6.850e+02 6.855e+02 6.860e+02 6.865e+02 6.870e+02 6.875e+02 6.880e+02 6.885e+02 6.890e+02 6.895e+02 6.900e+02 6.905e+02 6.910e+02 6.915e+02 6.950e+02 6.955e+02 6.960e+02 6.965e+02 6.970e+02 6.975e+02 6.980e+02 6.985e+02 6.990e+02 6.995e+02 7.025e+02 7.030e+02 7.035e+02 7.040e+02 7.045e+02 7.050e+02 7.055e+02 7.060e+02 7.065e+02 7.100e+02 7.105e+02 7.110e+02 7.115e+02 7.120e+02 7.125e+02 7.130e+02 7.170e+02 7.175e+02 7.180e+02 7.185e+02 7.190e+02 7.195e+02 7.200e+02 7.205e+02 7.210e+02 7.215e+02 7.220e+02 7.255e+02 7.260e+02 7.265e+02 7.270e+02 7.275e+02 7.280e+02 7.285e+02 7.325e+02 7.330e+02 7.335e+02 7.340e+02 7.345e+02 7.350e+02 7.355e+02] INFO 2025-06-26 13:52:29,416 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.19741792e+09 1.19741792e+09 1.19741792e+09 1.19741792e+09 1.19741792e+09 1.19741792e+09 1.19741792e+09 1.19741792e+09 1.19741792e+09 1.19741792e+09 1.19741792e+09 1.19741793e+09 1.19741793e+09 1.19741793e+09 1.19741793e+09 1.19741793e+09 1.19741793e+09 1.19741793e+09 1.19741793e+09 1.19741793e+09 1.19741793e+09 1.19741793e+09 1.19741794e+09 1.19741794e+09 1.19741794e+09 1.19741794e+09 1.19741794e+09 1.19741794e+09 1.19741794e+09 1.19741794e+09 1.19741794e+09 1.19741794e+09 1.19741794e+09 1.19741794e+09 1.19741794e+09 1.19741794e+09 1.19741795e+09 1.19741795e+09 1.19741795e+09 1.19741795e+09 1.19741795e+09 1.19741795e+09 1.19741795e+09 1.19741795e+09 1.19741795e+09 1.19741796e+09 1.19741796e+09 1.19741796e+09 1.19741796e+09 1.19741796e+09 1.19741796e+09 1.19741796e+09 1.19741796e+09 1.19741796e+09 1.19741796e+09 1.19741796e+09 1.19741796e+09 1.19741796e+09 1.19741796e+09 1.19741797e+09 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1.19741862e+09 1.19741862e+09 1.19741862e+09 1.19741862e+09 1.19741862e+09 1.19741862e+09 1.19741862e+09 1.19741862e+09 1.19741862e+09 1.19741862e+09 1.19741863e+09 1.19741863e+09 1.19741863e+09 1.19741863e+09 1.19741863e+09 1.19741863e+09 1.19741863e+09 1.19741863e+09 1.19741863e+09 1.19741863e+09 1.19741864e+09 1.19741864e+09 1.19741864e+09 1.19741864e+09 1.19741864e+09 1.19741864e+09 1.19741864e+09 1.19741864e+09 1.19741864e+09 1.19741864e+09 1.19741864e+09 1.19741865e+09 1.19741865e+09 1.19741865e+09 1.19741865e+09 1.19741865e+09 1.19741865e+09 1.19741865e+09 1.19741865e+09 1.19741865e+09 1.19741865e+09 1.19741865e+09 1.19741865e+09 1.19741865e+09 1.19741866e+09] INFO 2025-06-26 13:52:29,424 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1197417919.9 1197417920.4, ..., timestampArray[-2:] = 1197418654.9 1197418655.4] INFO 2025-06-26 13:52:29,424 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1197417919.93473), np.float64(1197417920.43473)], ..., timestampList[-2:] = [np.float64(1197418654.93473), np.float64(1197418655.43473)]] INFO 2025-06-26 13:52:29,425 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 831) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 13:52:29,425 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [797, 818] INFO 2025-06-26 13:52:29,425 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 39 INFO 2025-06-26 13:52:29,425 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 831 INFO 2025-06-26 13:52:29,425 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1197417919.93473), np.float64(1197417920.43473)], ..., timestampList[-2:] = [np.float64(1197418654.93473), np.float64(1197418655.43473)]] INFO 2025-06-26 13:52:29,425 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 831) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 13:52:29,425 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(796), np.int32(817)]] from timestampList to create subSampledTimestampList INFO 2025-06-26 13:52:29,425 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 39 INFO 2025-06-26 13:52:29,425 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 ERROR 2025-06-26 13:52:29,425 lopcToNetCDF.py constructTimestampList():1501 [1] Cannot interpolate to cFrameEsecsListInterpolated: array of sample points is empty INFO 2025-06-26 13:52:29,427 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 39 INFO 2025-06-26 13:52:29,427 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1197417932.43473)], ..., tsList[-2:] = [np.float64(1197418625.43473), np.float64(1197418645.43473)] INFO 2025-06-26 13:52:29,427 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2007-12-12 00:05:32 Z INFO 2025-06-26 13:52:29,427 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2007-12-12 00:17:25 Z INFO 2025-06-26 13:52:29,427 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 821 INFO 2025-06-26 13:52:29,427 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [-9999], ..., cFrameEsecsList[-2:] = [-9999, -9999] INFO 2025-06-26 13:52:29,427 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 1969-12-31 21:13:21 Z INFO 2025-06-26 13:52:29,428 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 1969-12-31 21:13:21 Z INFO 2025-06-26 13:52:29,431 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2007.346.00/lopc.nc INFO 2025-06-26 13:52:29,431 lopcToNetCDF.py main():2384 [1] Processing finished: Thu Jun 26 13:52:29 2025 Elapsed processing time from start of processing = 1 seconds INFO 2025-06-26 13:52:29,433 process.py calibrate():227 [1] Calibration steps for 2007.346.00 INFO 2025-06-26 13:52:30,048 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 13:52:30,051 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 13:52:31,022 calibrate.py _nudge_pos():1806 [1] 117: 0.060 -0.0001123 0.0001013 3680 12.26 -1.358 1.531 2007-12-12T00:19:29.806510080 INFO 2025-06-26 13:52:31,862 calibrate.py _nudge_pos():1806 [1] 198: 0.060 -0.0002207 0.0002038 4100 13.66 -2.396 2.764 2007-12-12T00:34:29.804855808 INFO 2025-06-26 13:52:32,699 calibrate.py _nudge_pos():1806 [1] 279: 0.060 -0.0000319 0.0000752 8360 27.86 -0.170 0.500 2007-12-12T01:03:41.804835584 INFO 2025-06-26 13:52:33,512 calibrate.py _nudge_pos():1806 [1] 356: 0.060 -0.0000101 -0.0000519 7150 23.83 -0.063 -0.403 2007-12-12T01:28:47.811666944 INFO 2025-06-26 13:52:34,361 calibrate.py _nudge_pos():1806 [1] 438: 0.060 0.0000129 0.0000546 10095 33.65 0.057 0.301 2007-12-12T02:03:47.807807488 INFO 2025-06-26 13:52:35,182 calibrate.py _nudge_pos():1806 [1] 517: 0.060 0.0000537 0.0000820 9330 31.10 0.256 0.489 2007-12-12T02:36:11.804634624 INFO 2025-06-26 13:52:36,110 calibrate.py _nudge_pos():1806 [1] 600: 0.060 0.0000454 0.0000552 9610 32.03 0.210 0.319 2007-12-12T03:09:35.807350784 INFO 2025-06-26 13:52:37,023 calibrate.py _nudge_pos():1806 [1] 683: 0.060 0.0001541 0.0000833 10390 34.63 0.659 0.446 2007-12-12T03:45:35.809380864 INFO 2025-06-26 13:52:37,888 calibrate.py _nudge_pos():1806 [1] 759: 0.070 0.0001520 0.0001351 7695 25.65 0.878 0.976 2007-12-12T04:12:29.808814080 INFO 2025-06-26 13:52:38,701 calibrate.py _nudge_pos():1806 [1] 836: 0.080 0.0001292 0.0001570 6460 21.53 0.889 1.351 2007-12-12T04:35:17.805100032 INFO 2025-06-26 13:52:39,517 calibrate.py _nudge_pos():1806 [1] 913: 0.070 0.0000594 0.0000662 5740 19.13 0.460 0.641 2007-12-12T04:55:41.811249664 INFO 2025-06-26 13:52:40,380 calibrate.py _nudge_pos():1806 [1] 994: 0.070 0.0000658 -0.0001691 4550 15.16 0.642 -2.066 2007-12-12T05:12:11.803430912 INFO 2025-06-26 13:52:41,282 calibrate.py _nudge_pos():1806 [1] 1079: 0.070 0.0000358 -0.0000165 2190 7.30 0.727 -0.419 2007-12-12T05:20:53.807670784 INFO 2025-06-26 13:52:42,084 calibrate.py _nudge_pos():1806 [1] 1154: 0.070 0.0011323 0.0015348 9950 33.16 5.057 8.576 2007-12-12T05:55:17.806277376 INFO 2025-06-26 13:52:42,919 calibrate.py _nudge_pos():1806 [1] 1233: 0.080 0.0012149 0.0013236 7860 26.20 6.869 9.362 2007-12-12T06:22:47.803244800 INFO 2025-06-26 13:52:43,773 calibrate.py _nudge_pos():1806 [1] 1313: 0.070 0.0006919 0.0002326 2125 7.08 14.476 6.088 2007-12-12T06:31:11.808718080 INFO 2025-06-26 13:52:44,402 calibrate.py _nudge_pos():1806 [1] 1373: 0.080 0.0046820 -0.0018432 13835 46.11 15.045 -7.407 2007-12-12T07:18:17.805124096 INFO 2025-06-26 13:52:45,203 calibrate.py _nudge_pos():1806 [1] 1447: 0.070 0.0041397 -0.0021719 14425 48.08 12.763 -8.370 2007-12-12T08:07:35.812486656 INFO 2025-06-26 13:52:46,046 calibrate.py _nudge_pos():1806 [1] 1523: 0.080 0.0029329 -0.0016160 10965 36.55 11.899 -8.194 2007-12-12T08:45:23.807118336 INFO 2025-06-26 13:52:46,900 calibrate.py _nudge_pos():1806 [1] 1601: 0.080 0.0025641 -0.0013611 9725 32.41 11.732 -7.781 2007-12-12T09:19:05.808601856 INFO 2025-06-26 13:52:46,957 calibrate.py _nudge_pos():1806 [1] 1606: 0.080 0.0000192 -0.0000018 55 0.18 15.830 -1.814 2007-12-12T09:19:20.807574272 INFO 2025-06-26 13:52:47,883 calibrate.py _nudge_pos():1806 [1] 1689: 0.080 0.0025087 -0.0017972 13195 43.98 8.462 -7.572 2007-12-12T10:04:41.811172608 INFO 2025-06-26 13:52:48,730 calibrate.py _nudge_pos():1806 [1] 1765: 0.080 0.0025493 -0.0029519 15765 52.55 7.200 -10.410 2007-12-12T10:58:29.810039808 INFO 2025-06-26 13:52:49,462 calibrate.py _nudge_pos():1806 [1] 1830: 0.080 0.0007352 -0.0028135 14560 48.53 2.249 -10.743 2007-12-12T11:48:05.806170112 INFO 2025-06-26 13:52:50,262 calibrate.py _nudge_pos():1806 [1] 1901: 0.080 0.0003710 -0.0003475 5080 16.93 3.253 -3.803 2007-12-12T12:06:11.811773440 INFO 2025-06-26 13:52:50,970 calibrate.py _nudge_pos():1806 [1] 1964: 0.080 0.0009059 0.0005771 3290 10.96 12.268 9.754 2007-12-12T12:18:11.812450048 INFO 2025-06-26 13:52:51,769 calibrate.py _nudge_pos():1806 [1] 2034: 0.080 0.0082587 0.0034763 19935 66.45 18.458 9.694 2007-12-12T13:25:47.804595712 INFO 2025-06-26 13:52:52,645 calibrate.py _nudge_pos():1806 [1] 2111: 0.090 0.0066087 0.0028524 12130 40.43 24.282 13.073 2007-12-12T14:07:29.803196928 INFO 2025-06-26 13:52:53,554 calibrate.py _nudge_pos():1806 [1] 2191: 0.090 0.0044073 0.0022934 12715 42.38 15.453 10.027 2007-12-12T14:51:11.803577600 INFO 2025-06-26 13:52:54,469 calibrate.py _nudge_pos():1806 [1] 2271: 0.080 0.0038149 0.0022994 12505 41.68 13.605 10.223 2007-12-12T15:34:11.806835456 INFO 2025-06-26 13:52:55,414 calibrate.py _nudge_pos():1806 [1] 2353: 0.080 0.0038182 0.0023905 13545 45.15 12.575 9.811 2007-12-12T16:20:41.805707264 INFO 2025-06-26 13:52:56,312 calibrate.py _nudge_pos():1806 [1] 2432: 0.090 0.0013071 0.0002187 3300 11.00 17.675 3.685 2007-12-12T16:32:59.805150976 INFO 2025-06-26 13:52:57,116 calibrate.py _nudge_pos():1806 [1] 2502: 0.080 0.0009432 0.0006121 4335 14.45 9.709 7.851 2007-12-12T16:48:35.811030272 INFO 2025-06-26 13:52:57,140 calibrate.py _nudge_pos():1806 [1] 2504: 0.080 0.0000168 0.0000143 115 0.38 6.594 6.950 2007-12-12T16:48:59.809385984 INFO 2025-06-26 13:52:57,994 calibrate.py _nudge_pos():1806 [1] 2574: 0.090 0.0000163 0.0000363 10125 33.75 0.072 0.199 2007-12-12T17:23:53.805937408 INFO 2025-06-26 13:52:58,852 calibrate.py _nudge_pos():1806 [1] 2649: 0.080 0.0000052 0.0000459 10520 35.06 0.022 0.242 2007-12-12T18:00:11.806734336 INFO 2025-06-26 13:52:59,759 calibrate.py _nudge_pos():1806 [1] 2728: 0.080 -0.0000652 0.0000207 9030 30.10 -0.322 0.127 2007-12-12T18:31:35.807671296 INFO 2025-06-26 13:53:00,781 calibrate.py _nudge_pos():1806 [1] 2817: 0.090 -0.0000749 0.0000228 9280 30.93 -0.360 0.136 2007-12-12T19:03:59.804498432 INFO 2025-06-26 13:53:01,811 calibrate.py _nudge_pos():1806 [1] 2908: 0.090 -0.0000949 0.0000382 8940 29.80 -0.473 0.238 2007-12-12T19:35:17.805846528 INFO 2025-06-26 13:53:02,726 calibrate.py _nudge_pos():1806 [1] 2985: 0.090 -0.0000897 0.0000208 9250 30.83 -0.432 0.125 2007-12-12T20:07:23.803906560 INFO 2025-06-26 13:53:03,584 calibrate.py _nudge_pos():1806 [1] 3059: 0.090 -0.0000718 0.0000302 9745 32.48 -0.328 0.172 2007-12-12T20:41:05.805390080 INFO 2025-06-26 13:53:04,442 calibrate.py _nudge_pos():1806 [1] 3131: 0.090 -0.0008082 0.0005551 9005 30.01 -3.996 3.427 2007-12-12T21:12:17.807149056 INFO 2025-06-26 13:53:04,786 calibrate.py _nudge_pos():1862 [1] 3131: - - - 3 0.01 - - INFO 2025-06-26 13:53:04,786 calibrate.py _nudge_pos():1868 [1] Points in final series = 380098 WARNING 2025-06-26 13:53:05,388 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 9.09 Hz INFO 2025-06-26 13:53:43,697 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 266 of 304030 INFO 2025-06-26 13:53:45,988 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 0 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:53:48,782 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 22 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:53:51,052 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 22 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:53:51,057 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2007.346.00/ctd1.nc INFO 2025-06-26 13:53:51,058 calibrate.py _range_qc_combined_nc():898 [1] Setting 473 ctd1_salinity values to NaN INFO 2025-06-26 13:53:51,059 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 13:53:51,059 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 13:54:07,783 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 22 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 13:54:10,044 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 22 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 13:54:10,048 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2007.346.00/ctd2.nc INFO 2025-06-26 13:54:10,050 calibrate.py _range_qc_combined_nc():898 [1] Setting 177 ctd2_salinity values to NaN INFO 2025-06-26 13:54:10,051 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 13:54:10,051 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 13:54:10,234 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 13:54:13,766 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 19140 37800 37801 79980 818760 1048800 1603680 1852080 1852081 2177820 2743800 2743801 2927520 4460700] INFO 2025-06-26 13:54:14,502 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -6 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 13:54:14,509 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 13:54:14,519 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2007.346.00 INFO 2025-06-26 13:54:14,581 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2007.346.00/dorado_2007.346.00_cal.nc INFO 2025-06-26 13:54:24,164 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 13:54:24,172 process.py align():251 [1] Alignment steps for 2007.346.00 INFO 2025-06-26 13:54:24,217 align.py process_cal():139 [1] Processing dorado_2007.346.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2007.346.00 INFO 2025-06-26 13:54:24,313 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:54:24,323 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 13:54:24,578 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:54:24,593 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 13:54:24,824 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:54:24,840 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 13:54:24,979 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 13:54:24,979 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 13:54:25,079 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:54:25,093 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 13:54:25,320 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.346.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:54:25,331 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:54:25,531 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.346.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:54:25,543 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:54:25,745 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.346.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:54:25,756 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:54:25,956 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.346.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:54:25,967 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:54:26,171 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.346.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:54:26,182 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:54:26,386 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.346.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:54:26,397 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:54:26,601 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.346.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:54:26,612 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:54:26,812 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.346.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:54:26,822 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:54:27,037 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.346.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:54:27,050 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:54:27,248 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.346.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:54:27,262 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:54:27,464 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.346.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:54:27,475 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:54:27,676 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.346.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:54:27,687 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:54:27,887 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.346.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:54:27,897 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:54:28,110 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.346.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:54:28,121 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:54:28,325 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.346.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:54:28,336 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:54:28,536 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.346.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:54:28,546 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:54:28,748 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.346.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:54:28,759 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:54:28,960 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.346.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:54:28,973 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:54:29,173 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.346.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:54:29,184 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:54:29,384 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.346.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:54:29,394 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:54:29,639 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 13:54:29,791 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 13:54:29,947 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 13:54:30,110 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 13:54:30,267 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.05 INFO 2025-06-26 13:54:30,394 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.05 INFO 2025-06-26 13:54:30,523 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.05 INFO 2025-06-26 13:54:30,652 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.05 INFO 2025-06-26 13:54:30,780 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.05 INFO 2025-06-26 13:54:30,910 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 1.02 INFO 2025-06-26 13:54:30,955 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2007.346.00/dorado_2007.346.00_align.nc INFO 2025-06-26 13:54:31,116 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 13:54:31,119 process.py resample():273 [1] Resampling steps for 2007.346.00 INFO 2025-06-26 13:54:31,120 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 13:54:31,155 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.346.00/dorado_2007.346.00_align.nc mission netCDF file INFO 2025-06-26 13:54:31,164 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.346.00/dorado_2007.346.00_align.nc mission netCDF file INFO 2025-06-26 13:54:31,167 resample.py get_mission_start_end():1145 [1] navigation: 2007-12-12T00:05:48.042804480 to 2007-12-12T21:12:47.405121536 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-26 13:54:31,169 resample.py get_mission_start_end():1145 [1] hs2 : 2007-12-12T00:05:20.344701952 to 2007-12-12T21:12:47.365124352 (0 days 00:00:00.089993728 before mission_end) INFO 2025-06-26 13:54:31,172 resample.py get_mission_start_end():1145 [1] ctd1 : 2007-12-12T00:05:42.493184768 to 2007-12-12T21:12:47.325126912 (0 days 00:00:00.129991168 before mission_end) INFO 2025-06-26 13:54:31,175 resample.py get_mission_start_end():1145 [1] ctd2 : 2007-12-12T00:05:42.503184128 to 2007-12-12T21:12:47.455118080 (0 days 00:00:00 before mission_end) INFO 2025-06-26 13:54:31,177 resample.py get_mission_start_end():1145 [1] isus : 2007-12-12T00:06:33.119716608 to 2007-12-12T21:12:46.545180416 (0 days 00:00:00.909937664 before mission_end) INFO 2025-06-26 13:54:31,178 resample.py get_mission_start_end():1145 [1] biolume : 2007-12-12T00:05:14.415073792 to 2007-12-12T21:12:46.265165312 (0 days 00:00:01.189952768 before mission_end) INFO 2025-06-26 13:54:31,180 resample.py get_mission_start_end():1145 [1] lopc : 2007-12-12T00:05:32.434729984 to 2007-12-12T00:17:25.434729984 (0 days 20:55:22.020388096 before mission_end) WARNING 2025-06-26 13:54:31,180 resample.py get_mission_start_end():1156 [1] Instrument lopc has a gap > 5 minutes at the end of the mission: 0 days 20:55:22.020388096 INFO 2025-06-26 13:54:31,181 resample.py get_mission_start_end():1145 [1] tailcone : 2007-12-12T00:05:20.164714240 to 2007-12-12T21:12:47.455118080 (0 days 00:00:00 before mission_end) INFO 2025-06-26 13:54:31,182 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.346.00/dorado_2007.346.00_align.nc mission netCDF file INFO 2025-06-26 13:54:31,183 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:31,938 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:32,063 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:32,196 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:32,322 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:32,423 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:32,525 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:32,625 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:32,724 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:32,819 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:32,921 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:33,017 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:33,112 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:33,206 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:33,300 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:33,394 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:33,489 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:33,587 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:33,690 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:33,796 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:33,896 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:33,996 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:34,098 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:34,136 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:34,167 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:34,197 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:34,232 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:34,248 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:34,248 resample.py resample_variable():1038 [1] Padding lopc_countListSum with 0 days 20:55:22.020388096 of NaNs to the end of mission INFO 2025-06-26 13:54:34,261 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:34,261 resample.py resample_variable():1038 [1] Padding lopc_transCount with 0 days 20:55:22.020388096 of NaNs to the end of mission INFO 2025-06-26 13:54:34,272 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:34,273 resample.py resample_variable():1038 [1] Padding lopc_nonTransCount with 0 days 20:55:22.020388096 of NaNs to the end of mission INFO 2025-06-26 13:54:34,283 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:34,283 resample.py resample_variable():1038 [1] Padding lopc_LCcount with 0 days 20:55:22.020388096 of NaNs to the end of mission INFO 2025-06-26 13:54:34,295 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:34,295 resample.py resample_variable():1038 [1] Padding lopc_flowSpeed with 0 days 20:55:22.020388096 of NaNs to the end of mission INFO 2025-06-26 13:54:34,326 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 13:54:34,855 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2007.346.00/dorado_2007.346.00_1S.nc INFO 2025-06-26 13:54:37,742 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 13:54:47,864 create_products.py gulper_odv():522 [1] Wrote 9 Gulper data lines to /data/auv_data/dorado/missionodvs/2007.346.00/dorado_2007.346.00_1S_Gulper.txt INFO 2025-06-26 13:54:47,865 process.py archive():337 [1] Archiving steps for 2007.346.00 INFO 2025-06-26 13:54:47,865 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2007.346.00/dorado_2007.346.00, BASE_PATH = /data/auv_data INFO 2025-06-26 13:54:47,867 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2007.346.00/dorado_2007.346.00 files to /Volumes/AUVCTD/surveys/2007/netcdf INFO 2025-06-26 13:54:47,867 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.346.00_1S.nc INFO 2025-06-26 13:54:47,922 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.346.00/dorado_2007.346.00_1S.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 13:54:47,923 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.346.00_cal.nc INFO 2025-06-26 13:54:48,200 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.346.00/dorado_2007.346.00_cal.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 13:54:48,201 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.346.00_align.nc INFO 2025-06-26 13:54:48,443 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.346.00/dorado_2007.346.00_align.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 13:54:48,517 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.346.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007346/2007.346.00 done. INFO 2025-06-26 13:54:48,590 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.346.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007346/2007.346.00 done. INFO 2025-06-26 13:54:48,595 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.346.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007346/2007.346.00 done. INFO 2025-06-26 13:54:48,645 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.346.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007346/2007.346.00 done. INFO 2025-06-26 13:54:48,863 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.346.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007346/2007.346.00 done. INFO 2025-06-26 13:54:48,873 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.346.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007346/2007.346.00 done. INFO 2025-06-26 13:54:48,960 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.346.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007346/2007.346.00 done. INFO 2025-06-26 13:54:48,977 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.346.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007346/2007.346.00 done. INFO 2025-06-26 13:54:49,164 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.346.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007346/2007.346.00 done. INFO 2025-06-26 13:54:49,171 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.346.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007346/2007.346.00 done. INFO 2025-06-26 13:54:49,171 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 13:54:49,173 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2007/odv/dorado_2007.346.00_1S_Gulper.txt INFO 2025-06-26 13:54:49,177 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2007.346.00/dorado_2007.346.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2007/odv done. INFO 2025-06-26 13:54:49,178 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.346.00/dorado_2007.346.00_processing.log /Volumes/AUVCTD/surveys/2007/netcdf