INFO 2025-06-26 13:50:32,226 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 13:50:32,226 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Canyon Axis with Gulper New nose with the LOPC and other instruments - ctdToUse = ctd1 INFO 2025-06-26 13:50:32,226 process.py process_mission():449 [1] Processing AUVCTD mission 2007.344.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 13:50:32,226 process.py download_process():165 [1] Download and processing steps for 2007.344.00 INFO 2025-06-26 13:50:32,227 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2007/2007344/2007.344.00 INFO 2025-06-26 13:50:32,227 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2007/2007344/2007.344.00 to /data/auv_data/dorado/missionlogs/2007.344.00 INFO 2025-06-26 13:50:39,694 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2007.344.00 INFO 2025-06-26 13:50:39,694 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.344.00/ctdDriver.log (25078460 bytes) INFO 2025-06-26 13:50:41,730 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.344.00/ctdDriver2.log (25084349 bytes) INFO 2025-06-26 13:50:43,691 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.344.00/gps.log (124340 bytes) INFO 2025-06-26 13:50:43,713 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.344.00/hydroscatlog.log (17100914 bytes) INFO 2025-06-26 13:50:45,774 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.344.00/navigation.log (84085746 bytes) INFO 2025-06-26 13:50:51,924 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.344.00/isuslog.log (1773493 bytes) INFO 2025-06-26 13:50:52,099 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.344.00/parosci.log (30029030 bytes) INFO 2025-06-26 13:50:54,648 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.344.00/tailCone.log (3447835 bytes) INFO 2025-06-26 13:50:55,083 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.344.00/biolume.log (19396188 bytes) INFO 2025-06-26 13:50:56,919 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 13:50:57,975 logs2netcdfs.py download_process_logs():807 [1] Time to process: 18.28 seconds INFO 2025-06-26 13:50:57,976 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2007.344.00/lopc.bin (34651161 bytes) INFO 2025-06-26 13:50:57,977 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 13:50:57 2025 INFO 2025-06-26 13:50:57,978 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2007.344.00/parosci.nc INFO 2025-06-26 13:50:57,978 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 13:50:57,978 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2007.344.00/parosci.nc INFO 2025-06-26 13:50:57,982 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1197324668.4, sensor_off_time = 1197395953.9 INFO 2025-06-26 13:50:57,982 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 71285 seconds. Expecting to read 142570 L frames from the lopc.bin file. INFO 2025-06-26 13:50:57,982 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 142570 records from the lopc.bin file. INFO 2025-06-26 13:50:58,818 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2007-12-10 22:11:08 Z and endTime = 2007-12-11 17:59:13 Z with 142570 records expected to be read from lopc.bin INFO 2025-06-26 13:50:58,818 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2007.344.00/lopc.bin INFO 2025-06-26 13:50:58,818 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2007.344.00/lopc.nc INFO 2025-06-26 13:50:58,819 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2007.344.00/lopc.nc INFO 2025-06-26 13:50:58,819 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2007.344.00 INFO 2025-06-26 13:50:58,819 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 13:50:58,860 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 13:50:58,861 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 13:50:58,861 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 13:50:59,401 lopcToNetCDF.py main():2340 [1] UnicodeDecodeError: 'utf-8' codec can't decode byte 0x85 in position 0: invalid start byte INFO 2025-06-26 13:50:59,402 lopcToNetCDF.py main():2341 [1] Failed to decode all of lopc.bin - resulting lopc.nc file likely incomplete INFO 2025-06-26 13:50:59,402 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2007.344.00/parosci.nc INFO 2025-06-26 13:50:59,402 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 13:50:59,402 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2007.344.00/parosci.nc INFO 2025-06-26 13:50:59,405 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1197324668.4, sensor_off_time = 1197395953.9 INFO 2025-06-26 13:50:59,406 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 71285 seconds. Expecting to read 142570 L frames from the lopc.bin file. INFO 2025-06-26 13:50:59,406 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 142570 records from the lopc.bin file. INFO 2025-06-26 13:50:59,406 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 23101 and len(sampleCountList) = 1769 INFO 2025-06-26 13:50:59,406 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [] INFO 2025-06-26 13:50:59,406 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [23101 23102 23103 ... 25447 25448 25449] INFO 2025-06-26 13:50:59,406 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-26 13:50:59,407 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-26 13:50:59,407 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [1 1 1 ... 1 1 1] INFO 2025-06-26 13:50:59,407 lopcToNetCDF.py deSpike():1590 [1] Found 0 spike indicators at indices: [] INFO 2025-06-26 13:50:59,407 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [23101 23102 23103 ... 25447 25448 25449] INFO 2025-06-26 13:50:59,407 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [23101 23102 23103 ... 25447 25448 25449] with len(correctedSampleCountList) = 1769 INFO 2025-06-26 13:50:59,407 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 23101 from all values of correctedSampleCountList INFO 2025-06-26 13:50:59,408 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-26 13:50:59,408 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [0.0000e+00 5.0000e-01 1.0000e+00 ... 1.1730e+03 1.1735e+03 1.1740e+03] INFO 2025-06-26 13:50:59,408 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.19732467e+09 1.19732467e+09 1.19732467e+09 ... 1.19732584e+09 1.19732584e+09 1.19732584e+09] INFO 2025-06-26 13:50:59,408 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1197324668.4 1197324668.9, ..., timestampArray[-2:] = 1197325841.9 1197325842.4] INFO 2025-06-26 13:50:59,410 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1197324668.4366438), np.float64(1197324668.9366438)], ..., timestampList[-2:] = [np.float64(1197325841.9366438), np.float64(1197325842.4366438)]] INFO 2025-06-26 13:50:59,410 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 1769) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 13:50:59,410 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [1721, 1742] INFO 2025-06-26 13:50:59,411 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 83 INFO 2025-06-26 13:50:59,411 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 1769 INFO 2025-06-26 13:50:59,411 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1197324668.4366438), np.float64(1197324668.9366438)], ..., timestampList[-2:] = [np.float64(1197325841.9366438), np.float64(1197325842.4366438)]] INFO 2025-06-26 13:50:59,411 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 1769) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 13:50:59,411 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(1720), np.int32(1741)]] from timestampList to create subSampledTimestampList INFO 2025-06-26 13:50:59,411 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 83 INFO 2025-06-26 13:50:59,411 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 ERROR 2025-06-26 13:50:59,411 lopcToNetCDF.py constructTimestampList():1501 [1] Cannot interpolate to cFrameEsecsListInterpolated: array of sample points is empty INFO 2025-06-26 13:50:59,414 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 83 INFO 2025-06-26 13:50:59,414 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1197324677.9366438)], ..., tsList[-2:] = [np.float64(1197325809.4366438), np.float64(1197325824.4366438)] INFO 2025-06-26 13:50:59,414 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2007-12-10 22:11:17 Z INFO 2025-06-26 13:50:59,414 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2007-12-10 22:30:24 Z INFO 2025-06-26 13:50:59,414 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 1752 INFO 2025-06-26 13:50:59,414 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [-9999], ..., cFrameEsecsList[-2:] = [-9999, -9999] INFO 2025-06-26 13:50:59,414 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 1969-12-31 21:13:21 Z INFO 2025-06-26 13:50:59,414 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 1969-12-31 21:13:21 Z INFO 2025-06-26 13:50:59,418 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2007.344.00/lopc.nc INFO 2025-06-26 13:50:59,418 lopcToNetCDF.py main():2384 [1] Processing finished: Thu Jun 26 13:50:59 2025 Elapsed processing time from start of processing = 1 seconds INFO 2025-06-26 13:50:59,420 process.py calibrate():227 [1] Calibration steps for 2007.344.00 INFO 2025-06-26 13:51:00,149 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 13:51:00,151 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 13:51:01,072 calibrate.py _nudge_pos():1806 [1] 112: 0.080 -0.0012696 -0.0014726 6580 21.93 -8.596 -12.443 2007-12-10T22:34:53.749003264 INFO 2025-06-26 13:51:01,656 calibrate.py _nudge_pos():1806 [1] 166: 0.080 -0.0031105 -0.0015181 12665 42.21 -10.942 -6.664 2007-12-10T23:17:59.751849984 INFO 2025-06-26 13:51:02,365 calibrate.py _nudge_pos():1806 [1] 235: 0.080 -0.0021349 0.0024309 14625 48.75 -6.504 9.240 2007-12-11T00:07:53.746747136 INFO 2025-06-26 13:51:03,100 calibrate.py _nudge_pos():1806 [1] 306: 0.090 -0.0006033 -0.0000770 1960 6.53 -13.720 -2.184 2007-12-11T00:15:35.745098240 INFO 2025-06-26 13:51:03,278 calibrate.py _nudge_pos():1806 [1] 323: 0.080 0.0000148 0.0000034 15 0.05 47.131 13.524 2007-12-11T00:15:54.753795840 INFO 2025-06-26 13:51:03,904 calibrate.py _nudge_pos():1806 [1] 384: 0.080 -0.0057449 -0.0002311 17395 57.98 -14.716 -0.739 2007-12-11T01:14:53.751357952 INFO 2025-06-26 13:51:04,631 calibrate.py _nudge_pos():1806 [1] 453: 0.080 -0.0089800 0.0036197 21680 72.26 -18.458 9.282 2007-12-11T02:28:17.749663232 INFO 2025-06-26 13:51:05,172 calibrate.py _nudge_pos():1806 [1] 504: 0.090 -0.0000291 0.0000233 20 0.06 -68.236 68.061 2007-12-11T02:29:11.745964544 INFO 2025-06-26 13:51:05,194 calibrate.py _nudge_pos():1806 [1] 506: 0.080 -0.0125655 -0.0043667 18775 62.58 -29.829 -12.930 2007-12-11T03:31:47.748660480 INFO 2025-06-26 13:51:05,995 calibrate.py _nudge_pos():1806 [1] 581: 0.080 -0.0171626 0.0056202 19190 63.96 -39.861 16.282 2007-12-11T04:36:59.750670080 INFO 2025-06-26 13:51:06,521 calibrate.py _nudge_pos():1806 [1] 629: 0.090 -0.0029947 -0.0014101 9605 32.01 -13.899 -8.162 2007-12-11T05:09:47.745853184 INFO 2025-06-26 13:51:06,607 calibrate.py _nudge_pos():1806 [1] 637: 0.090 -0.0030151 -0.0013983 50 0.16 -2740.153 -1584.820 2007-12-11T05:10:04.754688000 INFO 2025-06-26 13:51:07,369 calibrate.py _nudge_pos():1806 [1] 706: 0.100 -0.0023684 0.0014068 5480 18.26 -19.267 14.273 2007-12-11T05:29:28.744949248 INFO 2025-06-26 13:51:07,892 calibrate.py _nudge_pos():1806 [1] 754: 0.100 0.0051184 0.0035837 19450 64.83 11.729 10.243 2007-12-11T06:35:05.745246208 INFO 2025-06-26 13:51:08,549 calibrate.py _nudge_pos():1806 [1] 813: 0.090 0.0000072 0.0000446 15 0.05 22.931 176.978 2007-12-11T06:36:06.751067136 INFO 2025-06-26 13:51:08,655 calibrate.py _nudge_pos():1806 [1] 822: 0.100 0.0062275 0.0046378 19300 64.33 14.379 13.359 2007-12-11T07:40:34.746091264 INFO 2025-06-26 13:51:09,464 calibrate.py _nudge_pos():1806 [1] 896: 0.100 0.0044469 0.0059342 19135 63.78 10.355 17.241 2007-12-11T08:45:35.748854272 INFO 2025-06-26 13:51:10,112 calibrate.py _nudge_pos():1806 [1] 954: 0.090 0.0005511 0.0064680 19780 65.93 1.241 18.179 2007-12-11T09:52:28.753944576 INFO 2025-06-26 13:51:10,974 calibrate.py _nudge_pos():1806 [1] 1026: 0.100 0.0004999 0.0026939 9490 31.63 2.347 15.782 2007-12-11T10:25:17.749059328 INFO 2025-06-26 13:51:11,500 calibrate.py _nudge_pos():1806 [1] 1074: 0.110 -0.0005555 0.0019725 9545 31.81 -2.593 11.489 2007-12-11T10:57:53.745064192 INFO 2025-06-26 13:51:12,114 calibrate.py _nudge_pos():1806 [1] 1130: 0.110 -0.0007015 0.0033337 18535 61.78 -1.686 9.999 2007-12-11T12:00:35.747349504 INFO 2025-06-26 13:51:12,643 calibrate.py _nudge_pos():1806 [1] 1178: 0.100 -0.0000108 0.0000060 15 0.05 -34.388 23.799 2007-12-11T12:01:25.753923840 INFO 2025-06-26 13:51:12,655 calibrate.py _nudge_pos():1806 [1] 1179: 0.100 -0.0006167 0.0013062 12560 41.86 -2.187 5.782 2007-12-11T12:43:17.751840000 INFO 2025-06-26 13:51:13,288 calibrate.py _nudge_pos():1806 [1] 1236: 0.110 0.0025058 0.0006454 18290 60.96 6.102 1.962 2007-12-11T13:45:11.747414016 INFO 2025-06-26 13:51:13,929 calibrate.py _nudge_pos():1806 [1] 1294: 0.100 0.0020722 0.0004396 9435 31.45 9.783 2.590 2007-12-11T14:17:35.754240512 INFO 2025-06-26 13:51:14,707 calibrate.py _nudge_pos():1806 [1] 1364: 0.110 0.0031463 0.0008093 16215 54.05 8.641 2.775 2007-12-11T15:12:47.747353344 INFO 2025-06-26 13:51:15,339 calibrate.py _nudge_pos():1806 [1] 1419: 0.110 0.0021162 0.0005896 10020 33.40 9.405 3.271 2007-12-11T15:47:05.746370816 INFO 2025-06-26 13:51:15,896 calibrate.py _nudge_pos():1806 [1] 1469: 0.110 0.0019425 0.0001629 7610 25.36 11.367 1.190 2007-12-11T16:13:17.748681216 INFO 2025-06-26 13:51:16,711 calibrate.py _nudge_pos():1806 [1] 1542: 0.120 0.0020275 0.0006605 9240 30.80 9.770 3.974 2007-12-11T16:45:17.747152384 INFO 2025-06-26 13:51:17,401 calibrate.py _nudge_pos():1806 [1] 1603: 0.120 0.0009401 0.0007275 8520 28.40 4.913 4.747 2007-12-11T17:14:41.746310144 INFO 2025-06-26 13:51:18,196 calibrate.py _nudge_pos():1806 [1] 1670: 0.120 0.0014538 0.0010274 12810 42.70 5.052 4.459 2007-12-11T17:58:29.746279680 INFO 2025-06-26 13:51:18,706 calibrate.py _nudge_pos():1862 [1] 1686: - - - 1 0.00 - - INFO 2025-06-26 13:51:18,706 calibrate.py _nudge_pos():1868 [1] Points in final series = 356287 WARNING 2025-06-26 13:51:19,186 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 9.09 Hz INFO 2025-06-26 13:51:21,781 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 0 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 13:51:24,454 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 38 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:51:26,556 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 38 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:51:26,560 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2007.344.00/ctd1.nc INFO 2025-06-26 13:51:26,561 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 13:51:26,562 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 13:51:26,562 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 13:51:29,047 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 21 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:51:31,218 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 21 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:51:31,222 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2007.344.00/ctd2.nc INFO 2025-06-26 13:51:31,224 calibrate.py _range_qc_combined_nc():898 [1] Setting 172 ctd2_salinity values to NaN INFO 2025-06-26 13:51:31,224 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 13:51:31,224 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 13:51:31,326 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 13:51:34,640 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 63 1787100 1901160 4272960] INFO 2025-06-26 13:51:35,283 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -5 seconds, d_end_time_diff: 0 seconds ERROR 2025-06-26 13:51:35,290 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 13:51:35,302 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2007.344.00 INFO 2025-06-26 13:51:35,362 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2007.344.00/dorado_2007.344.00_cal.nc INFO 2025-06-26 13:51:35,572 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 13:51:35,581 process.py align():251 [1] Alignment steps for 2007.344.00 INFO 2025-06-26 13:51:35,627 align.py process_cal():139 [1] Processing dorado_2007.344.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2007.344.00 INFO 2025-06-26 13:51:35,719 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:51:35,729 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 13:51:35,954 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:51:35,967 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 13:51:36,188 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:51:36,204 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 13:51:36,336 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 13:51:36,337 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 13:51:36,424 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:51:36,436 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 13:51:36,658 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.344.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:51:36,670 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:51:36,860 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.344.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:51:36,870 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:51:37,069 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.344.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:51:37,081 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:51:37,277 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.344.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:51:37,288 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:51:37,518 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.344.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:51:37,529 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:51:37,743 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.344.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:51:37,754 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:51:37,946 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.344.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:51:37,957 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:51:38,158 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.344.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:51:38,170 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:51:38,360 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.344.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:51:38,371 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:51:38,564 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.344.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:51:38,577 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:51:38,768 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.344.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:51:38,778 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:51:38,967 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.344.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:51:38,977 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:51:39,170 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.344.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:51:39,179 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:51:39,371 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.344.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:51:39,381 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:51:39,572 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.344.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:51:39,583 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:51:39,772 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.344.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:51:39,782 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:51:39,971 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.344.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:51:39,982 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:51:40,176 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.344.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:51:40,189 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:51:40,379 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.344.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:51:40,391 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:51:40,581 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.344.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:51:40,591 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:51:40,821 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 13:51:40,965 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 13:51:41,113 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 13:51:41,262 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 13:51:41,412 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.07 INFO 2025-06-26 13:51:41,533 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.07 INFO 2025-06-26 13:51:41,655 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.07 INFO 2025-06-26 13:51:41,776 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.07 INFO 2025-06-26 13:51:41,897 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.07 INFO 2025-06-26 13:51:42,020 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 1.01 INFO 2025-06-26 13:51:42,069 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2007.344.00/dorado_2007.344.00_align.nc INFO 2025-06-26 13:51:42,228 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 13:51:42,230 process.py resample():273 [1] Resampling steps for 2007.344.00 INFO 2025-06-26 13:51:42,231 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 13:51:42,267 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.344.00/dorado_2007.344.00_align.nc mission netCDF file INFO 2025-06-26 13:51:42,276 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.344.00/dorado_2007.344.00_align.nc mission netCDF file INFO 2025-06-26 13:51:42,278 resample.py get_mission_start_end():1145 [1] navigation: 2007-12-10T22:11:36.164744448 to 2007-12-11T17:59:13.953251328 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-26 13:51:42,281 resample.py get_mission_start_end():1145 [1] hs2 : 2007-12-10T22:11:09.106597888 to 2007-12-11T17:59:14.003247872 (0 days 00:00:00 before mission_end) INFO 2025-06-26 13:51:42,283 resample.py get_mission_start_end():1145 [1] ctd1 : 2007-12-10T22:11:46.924007168 to 2007-12-11T17:59:13.873256960 (0 days 00:00:00.129990912 before mission_end) INFO 2025-06-26 13:51:42,286 resample.py get_mission_start_end():1145 [1] ctd2 : 2007-12-10T22:11:30.285147136 to 2007-12-11T17:59:13.873256960 (0 days 00:00:00.129990912 before mission_end) INFO 2025-06-26 13:51:42,288 resample.py get_mission_start_end():1145 [1] isus : 2007-12-10T22:12:21.111665152 to 2007-12-11T17:59:13.423287552 (0 days 00:00:00.579960320 before mission_end) INFO 2025-06-26 13:51:42,289 resample.py get_mission_start_end():1145 [1] biolume : 2007-12-10T22:11:03.096975360 to 2007-12-11T17:59:13.423253504 (0 days 00:00:00.579994368 before mission_end) INFO 2025-06-26 13:51:42,291 resample.py get_mission_start_end():1145 [1] lopc : 2007-12-10T22:11:17.936643840 to 2007-12-10T22:30:24.436643840 (0 days 19:28:49.566604032 before mission_end) WARNING 2025-06-26 13:51:42,292 resample.py get_mission_start_end():1156 [1] Instrument lopc has a gap > 5 minutes at the end of the mission: 0 days 19:28:49.566604032 INFO 2025-06-26 13:51:42,293 resample.py get_mission_start_end():1145 [1] tailcone : 2007-12-10T22:11:09.206591232 to 2007-12-11T17:59:13.513281536 (0 days 00:00:00.489966336 before mission_end) INFO 2025-06-26 13:51:42,294 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.344.00/dorado_2007.344.00_align.nc mission netCDF file INFO 2025-06-26 13:51:42,294 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:43,000 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:43,115 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:43,226 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:43,337 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:43,432 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:43,528 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:43,622 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:43,715 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:43,802 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:43,890 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:43,981 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:44,069 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:44,157 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:44,249 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:44,336 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:44,423 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:44,514 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:44,610 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:44,709 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:44,801 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:44,893 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:44,985 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:45,022 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:45,052 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:45,081 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:45,117 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:45,133 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:45,134 resample.py resample_variable():1038 [1] Padding lopc_countListSum with 0 days 19:28:49.566604032 of NaNs to the end of mission INFO 2025-06-26 13:51:45,148 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:45,148 resample.py resample_variable():1038 [1] Padding lopc_transCount with 0 days 19:28:49.566604032 of NaNs to the end of mission INFO 2025-06-26 13:51:45,161 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:45,162 resample.py resample_variable():1038 [1] Padding lopc_nonTransCount with 0 days 19:28:49.566604032 of NaNs to the end of mission INFO 2025-06-26 13:51:45,173 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:45,173 resample.py resample_variable():1038 [1] Padding lopc_LCcount with 0 days 19:28:49.566604032 of NaNs to the end of mission INFO 2025-06-26 13:51:45,185 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:45,185 resample.py resample_variable():1038 [1] Padding lopc_flowSpeed with 0 days 19:28:49.566604032 of NaNs to the end of mission INFO 2025-06-26 13:51:45,216 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 13:51:45,724 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2007.344.00/dorado_2007.344.00_1S.nc INFO 2025-06-26 13:51:48,850 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 13:51:59,778 create_products.py gulper_odv():522 [1] Wrote 10 Gulper data lines to /data/auv_data/dorado/missionodvs/2007.344.00/dorado_2007.344.00_1S_Gulper.txt INFO 2025-06-26 13:51:59,778 process.py archive():337 [1] Archiving steps for 2007.344.00 INFO 2025-06-26 13:51:59,778 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2007.344.00/dorado_2007.344.00, BASE_PATH = /data/auv_data INFO 2025-06-26 13:51:59,780 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2007.344.00/dorado_2007.344.00 files to /Volumes/AUVCTD/surveys/2007/netcdf INFO 2025-06-26 13:51:59,781 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.344.00_1S.nc INFO 2025-06-26 13:51:59,839 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.344.00/dorado_2007.344.00_1S.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 13:51:59,840 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.344.00_cal.nc INFO 2025-06-26 13:52:00,095 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.344.00/dorado_2007.344.00_cal.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 13:52:00,097 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.344.00_align.nc INFO 2025-06-26 13:52:00,332 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.344.00/dorado_2007.344.00_align.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 13:52:00,404 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.344.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007344/2007.344.00 done. INFO 2025-06-26 13:52:00,474 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.344.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007344/2007.344.00 done. INFO 2025-06-26 13:52:00,480 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.344.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007344/2007.344.00 done. INFO 2025-06-26 13:52:00,527 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.344.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007344/2007.344.00 done. INFO 2025-06-26 13:52:00,735 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.344.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007344/2007.344.00 done. INFO 2025-06-26 13:52:00,745 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.344.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007344/2007.344.00 done. INFO 2025-06-26 13:52:00,830 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.344.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007344/2007.344.00 done. INFO 2025-06-26 13:52:00,847 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.344.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007344/2007.344.00 done. INFO 2025-06-26 13:52:01,048 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.344.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007344/2007.344.00 done. INFO 2025-06-26 13:52:01,058 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.344.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007344/2007.344.00 done. INFO 2025-06-26 13:52:01,058 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 13:52:01,060 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2007/odv/dorado_2007.344.00_1S_Gulper.txt INFO 2025-06-26 13:52:01,065 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2007.344.00/dorado_2007.344.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2007/odv done. INFO 2025-06-26 13:52:01,065 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.344.00/dorado_2007.344.00_processing.log /Volumes/AUVCTD/surveys/2007/netcdf