INFO 2025-06-26 13:41:59,623 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 13:41:59,623 process.py process_mission():434 [1] dorado_info[mission]["comment"] = OCCO mission - Last one for Sept 2007 - ctdToUse = ctd1 INFO 2025-06-26 13:41:59,623 process.py process_mission():449 [1] Processing OCCO mission 2007.269.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 13:41:59,623 process.py download_process():165 [1] Download and processing steps for 2007.269.00 INFO 2025-06-26 13:41:59,623 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2007/2007269/2007.269.00 INFO 2025-06-26 13:41:59,623 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2007/2007269/2007.269.00 to /data/auv_data/dorado/missionlogs/2007.269.00 INFO 2025-06-26 13:42:05,683 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2007.269.00 INFO 2025-06-26 13:42:05,684 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.269.00/ctdDriver.log (21555203 bytes) INFO 2025-06-26 13:42:07,383 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.269.00/ctdDriver.log: [ 95 270 582 674 745 768 955 1141 1469 1501 1629 1735 1893 2007 2212 2854 3160 3345 3456 4144 4301 4477 4759 5041 5479 5600 6808 6973 9825 10310 10478 11389 11808 13185 14889 15579 16138 17917 18401 21409 23038 25509 27515 28749 29574 30324 30325 32148 32324 32946 33739 34131 36295 40455 41455 43233 51464 52674 55466 58549 59321 62970 63160 70060 73490 74012 75980 77492 77923 77982 81129 83157 83306 96783 102465 107981 109578 110162 110227 117420 123808 137021 137986 138032 143736 145487 152163 154638 154880 157162 159369 173078 177311 187774 189577 194935 197454 202306 204168 206228 210884 214452 217599 220496 220668 224383 227999 230502 231029 237740 243016 243458 244727] INFO 2025-06-26 13:42:07,454 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.269.00/ctdDriver2.log (21561445 bytes) INFO 2025-06-26 13:42:09,033 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.269.00/ctdDriver2.log: [ 12 14 21 158 330 512 643 735 805 809 827 1014 1200 1527 1686 1947 1950 2064 2269 2308 3218 3403 3514 3528 3581 4202 4727 4817 5099 5209 5335 5537 5657 6867 7220 9527 9886 10370 10905 11449 11868 11995 14316 14951 16202 17840 17982 18466 21476 22203 23105 25575 27581 28815 29640 31374 32214 32390 33012 33805 34196 36359 38507 40518 51528 52738 55431 55531 58614 60031 63035 63225 66695 68841 70127 73558 74079 76048 77991 78050 81197 83374 83867 93047 96116 96853 102536 109650 110234 110300 115198 117493 131531 137095 138060 138106 141811 143809 145219 145561 154955 155802 157238 159444 172115 173151 173673 177385 179202 187848 189650 190569 195008 202833 203805 204240 206301 210957 217671 220740 224454 228071 230574 231101 237812 243530 244798] INFO 2025-06-26 13:42:09,111 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.269.00/gps.log (248540 bytes) INFO 2025-06-26 13:42:09,145 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.269.00/hydroscatlog.log (14718794 bytes) INFO 2025-06-26 13:42:10,938 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.269.00/hydroscatlog.log: [ 33 38 66 83 90 94 101 149 295 308 319 422 523 524 548 608 741 774 775 832 903 908 916 928 1065 1097 1098 1122 1312 1378 1520 1548 1549 1632 1644 1675 1680 1913 2069 2073 2188 2270 2395 2420 2436 2460 2484 2516 2875 2876 2916 3044 3045 3115 3353 3652 3667 3721 3764 3774 4344 4345 4384 4504 4505 4682 4964 5247 5357 5358 5462 5484 5533 5660 5690 5812 6492 6650 7022 7023 7189 7327 7377 7410 7801 8124 8151 8565 8589 8864 9687 10463 10492 10534 10535 10704 10978 11008 11072 11618 12038 12085 12165 12894 13418 14487 15124 15685 15814 15984 16376 16541 17329 18157 18642 19164 19338 19369 19979 20462 21654 21655 22382 22636 23894 24459 25758 26908 27766 28998 28999 29092 29805 29828 30579 30621 31583 32406 32583 33203 33998 35752 36558 38704 40719 43497 44548 44580 45822 46032 47109 48232 48925 49997 51737 51880 52947 55640 55741 55888 56721 58074 58824 59598 60067 60244 62828 63250 63440 66540 66911 67180 69056 70156 72818 73774 73775 74297 74298 75566 75801 76268 76874 77779 78211 78270 78271 81416 83446 83595 83614 84090 85774 88403 93269 95512 96338 97024 97076 97450 100775 102761 103742 104008 105464 105465 107934 108280 108345 109877 110461 110462 110528 111214 115426 116859 116995 117180 117723 117724 123296 123297 123300 125401 128298 128559 130628 130805 131242 135203 135340 137346 138312 138359 138960 142064 145275 145472 145814 145815 148241 149125 150590 150781 152496 152589 153319 154971 154972 155214 156064 157498 159379 159705 159706 160824 161779 164215 165146 165573 166540 166822 168185 170932 172381 173416 173748 173913 173939 176499 177354 177655 177656 178817 179474 179475 181056 183340 184370 185006 188122 188169 190199 190844 191087 194940 195283 197800 198342 202392 202653 203109 203307 204519 205847 206579 208063 208865 208866 209514 211236 212324 213351 214804 216629 217951 220847 221020 221021 223558 223744 224666 224737 226499 227140 228357 230854 230860 231387 231388 234275 234670 235862 237971 243792 243818 244598 244815 245087 245088] INFO 2025-06-26 13:42:10,985 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.269.00/navigation.log (72209990 bytes) INFO 2025-06-26 13:42:16,207 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.269.00/isuslog.log (1555509 bytes) INFO 2025-06-26 13:42:16,359 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.269.00/parosci.log (25770422 bytes) INFO 2025-06-26 13:42:18,603 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.269.00/tailCone.log (2972251 bytes) INFO 2025-06-26 13:42:18,973 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.269.00/biolume.log (16696588 bytes) INFO 2025-06-26 13:42:20,583 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 13:42:21,447 logs2netcdfs.py download_process_logs():807 [1] Time to process: 15.76 seconds WARNING 2025-06-26 13:42:21,448 process.py download_process():196 [1] No lopc.bin file for 2007.269.00 INFO 2025-06-26 13:42:21,448 process.py calibrate():227 [1] Calibration steps for 2007.269.00 INFO 2025-06-26 13:42:21,945 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 13:42:21,947 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 13:42:22,858 calibrate.py _nudge_pos():1806 [1] 111: 0.080 0.0000204 -0.0000135 2111 7.21 0.418 -0.346 2007-09-26T19:52:29.448275200 INFO 2025-06-26 13:42:23,569 calibrate.py _nudge_pos():1806 [1] 182: 0.070 -0.0000297 -0.0000120 54 0.19 -23.532 -11.911 2007-09-26T19:53:51.452657664 INFO 2025-06-26 13:42:23,600 calibrate.py _nudge_pos():1806 [1] 185: 0.080 0.0001157 0.0003497 10725 36.10 0.475 1.795 2007-09-26T20:29:59.444140032 INFO 2025-06-26 13:42:23,641 calibrate.py _nudge_pos():1806 [1] 189: 0.080 -0.0000203 0.0000241 115 0.38 -7.919 11.759 2007-09-26T20:30:25.452358400 INFO 2025-06-26 13:42:24,441 calibrate.py _nudge_pos():1806 [1] 264: 0.080 0.0009433 0.0000593 2249 7.53 18.556 1.460 2007-09-26T20:39:11.446325248 INFO 2025-06-26 13:42:24,480 calibrate.py _nudge_pos():1806 [1] 267: 0.080 0.0000018 -0.0000022 108 0.36 0.720 -1.105 2007-09-26T20:39:35.444681472 INFO 2025-06-26 13:42:25,217 calibrate.py _nudge_pos():1806 [1] 337: 0.090 0.0001227 -0.0001215 9102 30.45 0.597 -0.740 2007-09-26T21:11:11.444796416 INFO 2025-06-26 13:42:25,982 calibrate.py _nudge_pos():1806 [1] 411: 0.080 0.0008669 0.0000329 2149 7.18 17.886 0.848 2007-09-26T21:19:35.450269696 INFO 2025-06-26 13:42:26,802 calibrate.py _nudge_pos():1806 [1] 492: 0.090 0.0000063 0.0003907 10432 34.86 0.027 2.077 2007-09-26T21:55:47.451477504 INFO 2025-06-26 13:42:27,609 calibrate.py _nudge_pos():1806 [1] 571: 0.090 0.0009412 0.0000421 2064 6.90 20.217 1.132 2007-09-26T22:03:59.447773440 INFO 2025-06-26 13:42:28,353 calibrate.py _nudge_pos():1806 [1] 644: 0.100 0.0001201 -0.0001613 9220 30.80 0.578 -0.970 2007-09-26T22:35:59.446244352 INFO 2025-06-26 13:42:29,296 calibrate.py _nudge_pos():1806 [1] 734: 0.090 0.0007805 0.0000040 2014 6.71 17.224 0.111 2007-09-26T22:44:11.452539648 INFO 2025-06-26 13:42:30,024 calibrate.py _nudge_pos():1806 [1] 806: 0.090 -0.0000678 0.0003148 9851 32.91 -0.305 1.772 2007-09-26T23:18:17.452379136 INFO 2025-06-26 13:42:30,035 calibrate.py _nudge_pos():1806 [1] 807: 0.090 -0.0000300 -0.0000032 35 0.11 -39.162 -5.253 2007-09-26T23:18:24.451899648 INFO 2025-06-26 13:42:30,741 calibrate.py _nudge_pos():1806 [1] 876: 0.100 0.0001997 0.0001074 8579 28.65 1.033 0.695 2007-09-26T23:48:11.449481984 INFO 2025-06-26 13:42:31,731 calibrate.py _nudge_pos():1806 [1] 969: 0.100 0.0000511 -0.0000035 3435 11.46 0.660 -0.056 2007-09-27T00:01:11.446048512 INFO 2025-06-26 13:42:32,534 calibrate.py _nudge_pos():1806 [1] 1043: 0.100 -0.0000446 0.0003977 10357 34.58 -0.191 2.131 2007-09-27T00:36:59.448900096 INFO 2025-06-26 13:42:32,566 calibrate.py _nudge_pos():1806 [1] 1046: 0.110 0.0000129 -0.0000137 110 0.36 5.247 -6.986 2007-09-27T00:37:23.447256064 INFO 2025-06-26 13:42:33,454 calibrate.py _nudge_pos():1806 [1] 1130: 0.100 0.0010127 0.0000243 2345 7.81 19.198 0.576 2007-09-27T00:46:35.449441536 INFO 2025-06-26 13:42:34,268 calibrate.py _nudge_pos():1806 [1] 1206: 0.110 0.0001660 -0.0000973 9505 31.75 0.775 -0.568 2007-09-27T01:19:35.443802624 INFO 2025-06-26 13:42:35,047 calibrate.py _nudge_pos():1806 [1] 1279: 0.110 0.0008661 0.0000493 2037 6.80 18.876 1.344 2007-09-27T01:27:35.450919936 INFO 2025-06-26 13:42:35,783 calibrate.py _nudge_pos():1806 [1] 1348: 0.120 0.0000441 0.0003146 10325 34.46 0.189 1.692 2007-09-27T02:03:11.444594176 INFO 2025-06-26 13:42:36,803 calibrate.py _nudge_pos():1806 [1] 1445: 0.110 0.0010983 0.0000802 2609 8.70 18.708 1.708 2007-09-27T02:13:29.452257792 INFO 2025-06-26 13:42:37,647 calibrate.py _nudge_pos():1806 [1] 1525: 0.120 0.0001527 -0.0001452 9909 33.08 0.684 -0.813 2007-09-27T02:47:53.450864384 INFO 2025-06-26 13:42:38,547 calibrate.py _nudge_pos():1806 [1] 1609: 0.120 0.0008756 0.0000306 2012 6.71 19.322 0.844 2007-09-27T02:55:59.447570944 INFO 2025-06-26 13:42:39,399 calibrate.py _nudge_pos():1806 [1] 1689: 0.130 -0.0000896 0.0004064 10023 33.48 -0.396 2.249 2007-09-27T03:30:47.444533504 INFO 2025-06-26 13:42:40,392 calibrate.py _nudge_pos():1806 [1] 1782: 0.130 0.0002522 0.0001135 8469 28.26 1.322 0.744 2007-09-27T04:00:35.452046592 INFO 2025-06-26 13:42:41,026 calibrate.py _nudge_pos():1806 [1] 1841: 0.120 0.0000619 0.0000249 3490 11.63 0.788 0.397 2007-09-27T04:13:11.450257408 INFO 2025-06-26 13:42:42,002 calibrate.py _nudge_pos():1806 [1] 1933: 0.130 -0.0000490 0.0005180 11266 37.68 -0.193 2.548 2007-09-27T04:52:23.449134336 INFO 2025-06-26 13:42:42,883 calibrate.py _nudge_pos():1806 [1] 2015: 0.140 0.0009896 0.0000848 2535 8.45 17.353 1.860 2007-09-27T05:02:11.448853504 INFO 2025-06-26 13:42:43,728 calibrate.py _nudge_pos():1806 [1] 2094: 0.140 0.0001743 -0.0001015 9077 30.30 0.852 -0.621 2007-09-27T05:33:47.448968704 INFO 2025-06-26 13:42:44,475 calibrate.py _nudge_pos():1806 [1] 2164: 0.140 0.0008974 0.0001532 2323 7.75 17.160 3.664 2007-09-27T05:42:41.452386816 INFO 2025-06-26 13:42:45,346 calibrate.py _nudge_pos():1806 [1] 2245: 0.150 -0.0000520 0.0004125 10711 35.76 -0.215 2.137 2007-09-27T06:19:47.449895680 INFO 2025-06-26 13:42:46,203 calibrate.py _nudge_pos():1806 [1] 2322: 0.150 0.0010119 0.0000265 2318 7.73 19.392 0.636 2007-09-27T06:28:47.452902912 INFO 2025-06-26 13:42:47,031 calibrate.py _nudge_pos():1806 [1] 2399: 0.160 0.0002947 -0.0000576 9656 32.23 1.355 -0.331 2007-09-27T07:02:17.445209088 INFO 2025-06-26 13:42:47,054 calibrate.py _nudge_pos():1806 [1] 2401: 0.160 -0.0000665 -0.0000513 125 0.41 -23.841 -23.005 2007-09-27T07:02:43.443428096 INFO 2025-06-26 13:42:47,791 calibrate.py _nudge_pos():1806 [1] 2469: 0.150 0.0008752 0.0000235 2084 6.95 18.665 0.628 2007-09-27T07:10:47.450271232 INFO 2025-06-26 13:42:48,480 calibrate.py _nudge_pos():1806 [1] 2533: 0.160 -0.0000806 0.0003713 10647 35.55 -0.336 1.936 2007-09-27T07:47:23.449835008 INFO 2025-06-26 13:42:49,258 calibrate.py _nudge_pos():1806 [1] 2605: 0.160 0.0003016 0.0001213 9258 30.91 1.445 0.727 2007-09-27T08:19:29.447895040 INFO 2025-06-26 13:42:49,878 calibrate.py _nudge_pos():1806 [1] 2662: 0.160 0.0000750 0.0000136 3230 10.76 1.032 0.234 2007-09-27T08:31:11.449804544 INFO 2025-06-26 13:42:49,911 calibrate.py _nudge_pos():1806 [1] 2665: 0.160 0.0000077 0.0000147 70 0.23 4.930 11.823 2007-09-27T08:31:27.448708608 INFO 2025-06-26 13:42:50,758 calibrate.py _nudge_pos():1806 [1] 2742: 0.170 -0.0000299 0.0004509 11227 37.46 -0.118 2.230 2007-09-27T09:10:11.449503744 INFO 2025-06-26 13:42:51,530 calibrate.py _nudge_pos():1806 [1] 2811: 0.160 0.0011034 0.0000143 2385 7.96 20.524 0.332 2007-09-27T09:19:17.452100096 INFO 2025-06-26 13:42:51,564 calibrate.py _nudge_pos():1806 [1] 2814: 0.170 -0.0000005 -0.0000432 15 0.05 -1.531 -171.528 2007-09-27T09:19:22.451757312 INFO 2025-06-26 13:42:52,409 calibrate.py _nudge_pos():1806 [1] 2892: 0.170 0.0002071 -0.0000810 9149 30.53 1.005 -0.492 2007-09-27T09:51:11.450982144 INFO 2025-06-26 13:42:53,276 calibrate.py _nudge_pos():1806 [1] 2971: 0.170 0.0009517 0.0001158 2365 7.90 17.852 2.718 2007-09-27T10:00:23.453167104 INFO 2025-06-26 13:42:53,321 calibrate.py _nudge_pos():1806 [1] 2975: 0.170 -0.0000013 0.0000098 80 0.26 -0.719 6.862 2007-09-27T10:00:42.451865600 INFO 2025-06-26 13:42:54,022 calibrate.py _nudge_pos():1806 [1] 3039: 0.180 -0.0000635 0.0003849 11005 36.73 -0.256 1.942 2007-09-27T10:38:29.446566144 INFO 2025-06-26 13:42:54,789 calibrate.py _nudge_pos():1806 [1] 3109: 0.180 0.0010827 0.0001274 2592 8.65 18.550 2.729 2007-09-27T10:48:17.446285312 INFO 2025-06-26 13:42:55,540 calibrate.py _nudge_pos():1806 [1] 3178: 0.180 0.0001627 -0.0001299 10237 34.16 0.706 -0.705 2007-09-27T11:23:35.451191808 INFO 2025-06-26 13:42:56,322 calibrate.py _nudge_pos():1806 [1] 3248: 0.190 0.0009552 0.0000275 2323 7.75 18.267 0.659 2007-09-27T11:32:29.444610816 INFO 2025-06-26 13:42:57,118 calibrate.py _nudge_pos():1806 [1] 3320: 0.190 -0.0001185 0.0004479 10279 34.31 -0.511 2.419 2007-09-27T12:07:59.448695552 INFO 2025-06-26 13:42:57,917 calibrate.py _nudge_pos():1806 [1] 3392: 0.190 0.0002217 0.0001347 6510 21.71 1.513 1.150 2007-09-27T12:30:53.444570624 INFO 2025-06-26 13:42:57,974 calibrate.py _nudge_pos():1806 [1] 3397: 0.190 -0.0000168 0.0000352 50 0.16 -15.219 39.897 2007-09-27T12:31:07.443611392 INFO 2025-06-26 13:42:58,445 calibrate.py _nudge_pos():1862 [1] 3409: - - - 4290 14.33 - - INFO 2025-06-26 13:42:58,445 calibrate.py _nudge_pos():1868 [1] Points in final series = 305966 WARNING 2025-06-26 13:42:58,929 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 9.09 Hz INFO 2025-06-26 13:43:29,384 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 8 of 244968 INFO 2025-06-26 13:43:31,246 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:43:48,566 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 41 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:43:50,412 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 41 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:43:50,417 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2007.269.00/ctd1.nc INFO 2025-06-26 13:43:50,419 calibrate.py _range_qc_combined_nc():898 [1] Setting 8 ctd1_salinity values to NaN INFO 2025-06-26 13:43:50,419 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 13:43:50,419 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 13:44:03,836 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 24 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:44:05,633 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 24 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:44:05,638 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2007.269.00/ctd2.nc INFO 2025-06-26 13:44:05,640 calibrate.py _range_qc_combined_nc():898 [1] Setting 344 ctd2_salinity values to NaN INFO 2025-06-26 13:44:05,640 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 13:44:05,640 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 13:44:05,730 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 13:44:08,631 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 ... 3671965 3671966 3671967] INFO 2025-06-26 13:44:09,192 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -7 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 13:44:09,199 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 13:44:09,199 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2007.269.00 ERROR 2025-06-26 13:44:09,200 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2007.269.00 INFO 2025-06-26 13:44:09,250 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2007.269.00/dorado_2007.269.00_cal.nc INFO 2025-06-26 13:44:28,226 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 13:44:28,235 process.py align():251 [1] Alignment steps for 2007.269.00 INFO 2025-06-26 13:44:28,276 align.py process_cal():139 [1] Processing dorado_2007.269.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2007.269.00 INFO 2025-06-26 13:44:28,358 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:44:28,366 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 13:44:28,560 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:44:28,571 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 13:44:28,761 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:44:28,773 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 13:44:28,890 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 13:44:28,890 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 13:44:28,965 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:44:28,977 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 13:44:29,167 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.269.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:44:29,177 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:44:29,342 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.269.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:44:29,352 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:44:29,517 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.269.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:44:29,526 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:44:29,690 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.269.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:44:29,699 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:44:29,867 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.269.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:44:29,877 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:44:30,043 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.269.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:44:30,052 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:44:30,218 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.269.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:44:30,227 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:44:30,391 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.269.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:44:30,400 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:44:30,567 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.269.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:44:30,577 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:44:30,742 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.269.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:44:30,751 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:44:30,921 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.269.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:44:30,930 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:44:31,110 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.269.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:44:31,119 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:44:31,287 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.269.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:44:31,295 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:44:31,458 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.269.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:44:31,468 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:44:31,635 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.269.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:44:31,644 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:44:31,822 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.269.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:44:31,834 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:44:32,011 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.269.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:44:32,021 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:44:32,187 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.269.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:44:32,197 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:44:32,368 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.269.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:44:32,379 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:44:32,549 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.269.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:44:32,557 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:44:32,758 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.79 INFO 2025-06-26 13:44:32,884 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.79 INFO 2025-06-26 13:44:33,014 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.79 INFO 2025-06-26 13:44:33,146 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 13:44:33,281 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 1.01 INFO 2025-06-26 13:44:33,319 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2007.269.00/dorado_2007.269.00_align.nc INFO 2025-06-26 13:44:33,454 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 13:44:33,456 process.py resample():273 [1] Resampling steps for 2007.269.00 INFO 2025-06-26 13:44:33,457 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 13:44:33,490 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.269.00/dorado_2007.269.00_align.nc mission netCDF file INFO 2025-06-26 13:44:33,498 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.269.00/dorado_2007.269.00_align.nc mission netCDF file INFO 2025-06-26 13:44:33,500 resample.py get_mission_start_end():1145 [1] navigation: 2007-09-26T19:43:57.963314432 to 2007-09-27T12:46:09.451819776 (0 days 00:00:00.039997184 before mission_end) INFO 2025-06-26 13:44:33,503 resample.py get_mission_start_end():1145 [1] hs2 : 2007-09-26T19:43:35.934823424 to 2007-09-27T12:46:09.331827968 (0 days 00:00:00.159988992 before mission_end) INFO 2025-06-26 13:44:33,506 resample.py get_mission_start_end():1145 [1] ctd1 : 2007-09-26T19:44:11.152410880 to 2007-09-27T12:46:09.381824512 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 13:44:33,508 resample.py get_mission_start_end():1145 [1] ctd2 : 2007-09-26T19:43:54.363561216 to 2007-09-27T12:46:09.491816960 (0 days 00:00:00 before mission_end) INFO 2025-06-26 13:44:33,510 resample.py get_mission_start_end():1145 [1] isus : 2007-09-26T19:44:47.479922176 to 2007-09-27T12:46:08.951854080 (0 days 00:00:00.539962880 before mission_end) INFO 2025-06-26 13:44:33,512 resample.py get_mission_start_end():1145 [1] biolume : 2007-09-26T19:43:23.415646720 to 2007-09-27T12:46:08.601843712 (0 days 00:00:00.889973248 before mission_end) INFO 2025-06-26 13:44:33,514 resample.py get_mission_start_end():1145 [1] tailcone : 2007-09-26T19:43:34.154945280 to 2007-09-27T12:46:09.011849984 (0 days 00:00:00.479966976 before mission_end) INFO 2025-06-26 13:44:33,515 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.269.00/dorado_2007.269.00_align.nc mission netCDF file INFO 2025-06-26 13:44:33,515 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:34,146 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:34,247 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:34,346 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:34,446 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:34,530 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:34,613 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:34,694 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:34,775 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:34,853 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:34,935 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:35,014 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:35,096 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:35,176 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:35,255 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:35,332 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:35,411 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:35,492 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:35,579 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:35,666 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:35,748 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:35,830 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:35,911 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:35,945 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:35,973 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:35,999 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:36,031 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:36,064 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 13:44:36,508 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2007.269.00/dorado_2007.269.00_1S.nc INFO 2025-06-26 13:44:39,502 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 13:44:50,611 create_products.py gulper_odv():522 [1] Wrote 10 Gulper data lines to /data/auv_data/dorado/missionodvs/2007.269.00/dorado_2007.269.00_1S_Gulper.txt INFO 2025-06-26 13:44:50,611 process.py archive():337 [1] Archiving steps for 2007.269.00 INFO 2025-06-26 13:44:50,611 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2007.269.00/dorado_2007.269.00, BASE_PATH = /data/auv_data INFO 2025-06-26 13:44:50,613 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2007.269.00/dorado_2007.269.00 files to /Volumes/AUVCTD/surveys/2007/netcdf INFO 2025-06-26 13:44:50,613 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.269.00_1S.nc INFO 2025-06-26 13:44:50,654 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.269.00/dorado_2007.269.00_1S.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 13:44:50,655 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.269.00_cal.nc INFO 2025-06-26 13:44:50,884 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.269.00/dorado_2007.269.00_cal.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 13:44:50,885 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.269.00_align.nc INFO 2025-06-26 13:44:51,073 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.269.00/dorado_2007.269.00_align.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 13:44:51,137 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.269.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007269/2007.269.00 done. INFO 2025-06-26 13:44:51,198 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.269.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007269/2007.269.00 done. INFO 2025-06-26 13:44:51,203 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.269.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007269/2007.269.00 done. INFO 2025-06-26 13:44:51,248 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.269.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007269/2007.269.00 done. INFO 2025-06-26 13:44:51,433 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.269.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007269/2007.269.00 done. INFO 2025-06-26 13:44:51,443 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.269.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007269/2007.269.00 done. INFO 2025-06-26 13:44:51,519 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.269.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007269/2007.269.00 done. INFO 2025-06-26 13:44:51,534 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.269.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007269/2007.269.00 done. INFO 2025-06-26 13:44:51,696 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.269.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007269/2007.269.00 done. INFO 2025-06-26 13:44:51,696 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 13:44:51,697 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2007/odv/dorado_2007.269.00_1S_Gulper.txt INFO 2025-06-26 13:44:51,702 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2007.269.00/dorado_2007.269.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2007/odv done. INFO 2025-06-26 13:44:51,702 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.269.00/dorado_2007.269.00_processing.log /Volumes/AUVCTD/surveys/2007/netcdf