INFO 2025-06-26 13:37:29,997 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 13:37:29,997 process.py process_mission():434 [1] dorado_info[mission]["comment"] = OCCO mission - Tight box survey about ESP site - ctdToUse = ctd1 INFO 2025-06-26 13:37:29,997 process.py process_mission():449 [1] Processing OCCO mission 2007.267.04 by user docker_user on host eae60d30a712 INFO 2025-06-26 13:37:29,997 process.py download_process():165 [1] Download and processing steps for 2007.267.04 INFO 2025-06-26 13:37:29,997 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2007/2007267/2007.267.04 INFO 2025-06-26 13:37:29,997 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2007/2007267/2007.267.04 to /data/auv_data/dorado/missionlogs/2007.267.04 INFO 2025-06-26 13:37:36,521 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2007.267.04 INFO 2025-06-26 13:37:36,521 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.267.04/ctdDriver.log (23089219 bytes) INFO 2025-06-26 13:37:38,233 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.267.04/ctdDriver.log: [ 110 266 345 537 699 911 913 1293 1413 1421 1432 1562 1749 1839 1951 2114 2261 2276 3324 4065 4897 7867 7924 8211 9341 9389 10444 11522 11937 12435 14030 14246 15507 18857 19290 19459 21205 21551 22571 22804 24157 25215 29520 31269 32247 32500 38387 39237 41975 42452 42628 42952 43280 47819 48927 49664 51926 52610 60863 64047 66840 69813 71982 73108 73955 79484 79738 83245 84611 85534 86988 88184 89905 90771 91561 94492 95302 100665 101993 102414 109363 109530 110114 115707 116834 117527 123548 124505 127611 130877 136979 137152 137991 139509 141350 143695 145102 152608 154508 157023 162006 163837 165106 166440 167731 170533 170555 170995 177274 180851 182395 184519 187440 199515 202012 202263 202982 205754 207024 207386 217564 217722 222023 223357 227333 228525 230473 231000 233798 237029 237040 237587 241985 244429 244532 245511 247284 251145 251917 252036 254323 257861 258929 261846] INFO 2025-06-26 13:37:38,313 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.267.04/ctdDriver2.log (23101093 bytes) INFO 2025-06-26 13:37:40,000 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.267.04/ctdDriver2.log: [ 18 122 227 385 464 654 722 815 865 1026 1408 1529 1536 1547 1678 1865 2350 2379 2393 2684 2771 4119 4186 5133 5397 5881 6804 8048 8335 9467 9513 9514 9516 10571 12068 12565 14160 14373 15368 15634 18984 19417 19587 21335 21680 22938 24291 29006 29649 31398 32376 32629 34703 35718 39369 42108 43086 47957 49065 49803 52063 52748 61002 64185 64560 66980 69954 72123 73248 74096 79879 83386 85765 87130 88327 90047 90107 90914 91476 91704 94634 95443 102555 109668 110252 110686 115844 116970 117664 123690 124648 128979 130406 131019 137121 137294 138133 139652 141493 143838 145246 147698 154652 162681 163982 166586 167877 169272 170679 170700 171139 177418 181098 181536 184665 187586 199660 202157 202408 203125 205896 207167 207528 217704 217862 222163 223497 231137 233935 237722 242121 244566 244669 252052 252171 254458 257996 259064 261981] INFO 2025-06-26 13:37:40,089 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.267.04/gps.log (268412 bytes) INFO 2025-06-26 13:37:40,125 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.267.04/hydroscatlog.log (15768794 bytes) INFO 2025-06-26 13:37:42,019 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.267.04/hydroscatlog.log: [ 26 40 89 101 230 273 298 319 330 478 535 558 559 605 750 751 786 820 821 848 885 939 1076 1096 1133 1134 1137 1299 1453 1520 1559 1597 1663 1664 1726 1795 1796 1848 1940 1984 1985 2076 2188 2286 2353 2411 2420 2469 2476 2505 2520 2521 2898 3036 3116 3366 3481 3555 3574 3590 3691 3764 3929 4256 4323 4324 4590 4680 4873 4980 5157 5158 5264 5272 5384 5431 5501 5539 5654 6026 6421 6448 6512 6952 7023 7671 7785 7820 8144 8145 8202 8490 9554 9623 9624 9671 9673 9674 10420 10514 10536 10588 10733 11001 11780 12207 12240 12736 12737 13852 14334 14346 14551 15813 16397 17156 17157 17190 17353 17738 19109 19169 19602 19773 21511 21519 21865 22890 22891 23123 23124 23367 23427 23724 24481 25538 25636 26042 27293 27361 27765 28658 29205 29375 29850 32582 32834 32835 33677 34807 34910 35926 35927 36576 38221 38683 38727 39580 40897 42318 42798 42900 42976 43300 43639 45849 47015 48178 48664 49285 49835 50023 50653 52288 53587 56740 57337 60086 61223 62069 62157 63458 64176 64786 68137 70180 72349 72350 72591 73474 75831 76898 79851 80106 80107 81434 83415 83613 84979 85902 88090 88558 90277 90336 91144 91145 91707 91936 91937 94867 95677 96015 97055 101038 102367 102790 103773 108039 108885 109738 109827 109873 109907 109908 110492 110928 111518 112483 113525 116088 117213 117214 117386 117909 124156 127435 129229 129230 130657 130658 132400 133140 133688 136888 137377 137551 138391 139910 141749 143078 143989 144633 145505 145949 147414 147415 147959 147960 152618 154913 157427 157527 157529 162943 164244 166848 167898 168140 169533 169920 170027 170943 170965 170966 171406 172569 175705 177685 181363 182808 184403 184933 187854 188205 191119 192431 192741 195314 197829 198143 199929 202424 202425 202987 203396 204549 205098 205199 205896 205897 206170 206713 207040 207443 207805 209548 211269 212609 216658 217982 218140 220286 223775 223776 224700 227753 228943 229033 229034 229948 230893 231421 232471 234218 237447 237459 238006 238135 240848 242404 244953 244954 245123 245124 245933 247708 251566 251567 251690 252240 252461 252780 252870 254493 254750 258288 259357 259965 262273] INFO 2025-06-26 13:37:42,071 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.267.04/navigation.log (77357150 bytes) INFO 2025-06-26 13:37:47,953 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.267.04/isuslog.log (1666741 bytes) INFO 2025-06-26 13:37:48,111 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.267.04/isuslog.log: [1 2 3 5 6 7 8 9] INFO 2025-06-26 13:37:48,116 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.267.04/parosci.log (27597014 bytes) INFO 2025-06-26 13:37:50,524 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.267.04/tailCone.log (3205243 bytes) INFO 2025-06-26 13:37:50,924 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.267.04/biolume.log (17887404 bytes) INFO 2025-06-26 13:37:52,661 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 13:37:53,575 logs2netcdfs.py download_process_logs():807 [1] Time to process: 17.05 seconds WARNING 2025-06-26 13:37:53,576 process.py download_process():196 [1] No lopc.bin file for 2007.267.04 INFO 2025-06-26 13:37:53,576 process.py calibrate():227 [1] Calibration steps for 2007.267.04 INFO 2025-06-26 13:37:54,102 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 13:37:54,104 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 13:37:55,141 calibrate.py _nudge_pos():1806 [1] 129: 0.190 0.0001954 -0.0000297 903 3.13 9.249 -1.755 2007-09-24T21:10:23.340625408 INFO 2025-06-26 13:37:56,030 calibrate.py _nudge_pos():1806 [1] 215: 0.190 0.0002841 0.0003388 9625 32.48 1.295 1.933 2007-09-24T21:44:17.341286656 INFO 2025-06-26 13:37:56,994 calibrate.py _nudge_pos():1806 [1] 309: 0.190 0.0010172 -0.0000553 2396 8.05 18.725 -1.273 2007-09-24T21:53:53.341828096 INFO 2025-06-26 13:37:57,904 calibrate.py _nudge_pos():1806 [1] 396: 0.190 0.0001267 -0.0001805 10152 33.96 0.553 -0.985 2007-09-24T22:29:17.346323712 INFO 2025-06-26 13:37:58,679 calibrate.py _nudge_pos():1806 [1] 471: 0.200 0.0008679 0.0000008 2114 7.06 18.210 0.022 2007-09-24T22:37:35.342208512 INFO 2025-06-26 13:37:59,281 calibrate.py _nudge_pos():1806 [1] 529: 0.190 -0.0000054 0.0000152 15 0.05 -17.088 60.441 2007-09-24T22:38:35.348098048 INFO 2025-06-26 13:37:59,302 calibrate.py _nudge_pos():1806 [1] 531: 0.200 0.0001102 0.0003562 9836 32.88 0.496 2.008 2007-09-24T23:11:29.342870016 INFO 2025-06-26 13:38:00,013 calibrate.py _nudge_pos():1806 [1] 600: 0.200 0.0010100 0.0000694 2144 7.16 20.887 1.796 2007-09-24T23:19:47.348754432 INFO 2025-06-26 13:38:00,898 calibrate.py _nudge_pos():1806 [1] 686: 0.200 0.0001347 -0.0002398 10114 33.78 0.591 -1.316 2007-09-24T23:54:59.344072704 INFO 2025-06-26 13:38:01,309 calibrate.py _nudge_pos():1806 [1] 725: 0.200 0.0000023 0.0000435 39 0.13 2.667 63.600 2007-09-24T23:55:45.340921600 INFO 2025-06-26 13:38:01,658 calibrate.py _nudge_pos():1806 [1] 758: 0.200 0.0008660 0.0000459 2248 7.50 17.114 1.135 2007-09-25T00:03:47.347901952 INFO 2025-06-26 13:38:02,516 calibrate.py _nudge_pos():1806 [1] 839: 0.010 -0.0000161 0.0003126 9413 31.46 -0.076 1.841 2007-09-25T00:36:35.543071488 INFO 2025-06-26 13:38:03,087 calibrate.py _nudge_pos():1806 [1] 893: 0.010 0.0001781 0.0000991 9348 31.20 0.845 0.589 2007-09-25T01:08:41.541131520 INFO 2025-06-26 13:38:04,058 calibrate.py _nudge_pos():1806 [1] 985: 0.020 0.0000439 -0.0000127 3950 13.18 0.493 -0.179 2007-09-25T01:23:23.540710400 INFO 2025-06-26 13:38:04,889 calibrate.py _nudge_pos():1806 [1] 1063: 0.020 0.0000479 0.0003846 9618 32.11 0.221 2.219 2007-09-25T01:56:47.543426816 INFO 2025-06-26 13:38:05,737 calibrate.py _nudge_pos():1806 [1] 1142: 0.020 0.0009499 -0.0000070 2460 8.20 17.166 -0.158 2007-09-25T02:06:17.544378880 INFO 2025-06-26 13:38:06,585 calibrate.py _nudge_pos():1806 [1] 1221: 0.020 0.0001394 -0.0002158 9887 33.00 0.626 -1.212 2007-09-25T02:40:35.543396352 INFO 2025-06-26 13:38:06,596 calibrate.py _nudge_pos():1806 [1] 1222: 0.020 0.0000321 -0.0000086 150 0.50 9.565 -3.210 2007-09-25T02:41:05.541341440 INFO 2025-06-26 13:38:07,390 calibrate.py _nudge_pos():1806 [1] 1296: 0.020 0.0008135 0.0000078 2062 6.88 17.515 0.211 2007-09-25T02:49:11.548047872 INFO 2025-06-26 13:38:08,174 calibrate.py _nudge_pos():1806 [1] 1368: 0.020 0.0000443 0.0003118 9910 33.11 0.198 1.745 2007-09-25T03:23:29.547065344 INFO 2025-06-26 13:38:09,096 calibrate.py _nudge_pos():1806 [1] 1454: 0.030 0.0009725 -0.0000056 2268 7.58 19.006 -0.136 2007-09-25T03:32:29.540073216 INFO 2025-06-26 13:38:09,876 calibrate.py _nudge_pos():1806 [1] 1527: 0.030 0.0002517 -0.0002639 9949 33.20 1.123 -1.473 2007-09-25T04:06:53.548678912 INFO 2025-06-26 13:38:10,820 calibrate.py _nudge_pos():1806 [1] 1615: 0.030 0.0006746 0.0001507 1811 6.05 16.529 4.617 2007-09-25T04:14:23.547851776 INFO 2025-06-26 13:38:11,787 calibrate.py _nudge_pos():1806 [1] 1704: 0.030 -0.0000026 0.0002447 10101 33.73 -0.012 1.344 2007-09-25T04:49:35.543170304 INFO 2025-06-26 13:38:11,799 calibrate.py _nudge_pos():1806 [1] 1705: 0.040 -0.0000036 0.0000241 150 0.50 -1.074 8.982 2007-09-25T04:50:05.541115392 INFO 2025-06-26 13:38:12,802 calibrate.py _nudge_pos():1806 [1] 1799: 0.030 0.0001869 0.0000564 9239 30.85 0.898 0.339 2007-09-25T05:22:29.547941632 INFO 2025-06-26 13:38:13,588 calibrate.py _nudge_pos():1806 [1] 1872: 0.040 0.0000517 -0.0000107 3660 12.20 0.628 -0.162 2007-09-25T05:35:53.542864128 INFO 2025-06-26 13:38:14,448 calibrate.py _nudge_pos():1806 [1] 1952: 0.040 -0.0000302 0.0003388 10432 34.88 -0.128 1.800 2007-09-25T06:12:05.544071936 INFO 2025-06-26 13:38:15,227 calibrate.py _nudge_pos():1806 [1] 2024: 0.040 0.0010795 -0.0000369 2433 8.11 19.708 -0.843 2007-09-25T06:21:23.545846272 INFO 2025-06-26 13:38:16,031 calibrate.py _nudge_pos():1806 [1] 2098: 0.050 0.0001753 -0.0000857 9429 31.48 0.825 -0.505 2007-09-25T06:54:05.541440256 INFO 2025-06-26 13:38:16,763 calibrate.py _nudge_pos():1806 [1] 2163: 0.050 0.0009554 0.0000749 2498 8.33 16.989 1.667 2007-09-25T07:03:29.542803456 INFO 2025-06-26 13:38:17,612 calibrate.py _nudge_pos():1806 [1] 2240: 0.050 -0.0000588 0.0003390 10315 34.43 -0.253 1.824 2007-09-25T07:39:11.546066176 INFO 2025-06-26 13:38:18,339 calibrate.py _nudge_pos():1806 [1] 2306: 0.050 0.0010348 0.0000192 2460 8.21 18.664 0.433 2007-09-25T07:48:29.547840512 INFO 2025-06-26 13:38:19,127 calibrate.py _nudge_pos():1806 [1] 2378: 0.050 0.0001872 -0.0001376 9566 31.91 0.869 -0.799 2007-09-25T08:21:35.541790464 INFO 2025-06-26 13:38:19,914 calibrate.py _nudge_pos():1806 [1] 2450: 0.050 0.0008984 0.0001096 2343 7.81 17.035 2.600 2007-09-25T08:30:35.544797952 INFO 2025-06-26 13:38:20,841 calibrate.py _nudge_pos():1806 [1] 2530: 0.050 -0.0000284 0.0000282 20 0.06 -66.434 82.521 2007-09-25T08:31:58.549111552 INFO 2025-06-26 13:38:20,864 calibrate.py _nudge_pos():1806 [1] 2532: 0.060 -0.0001318 0.0003484 9996 33.40 -0.585 1.933 2007-09-25T09:05:23.541760256 INFO 2025-06-26 13:38:21,679 calibrate.py _nudge_pos():1806 [1] 2605: 0.050 0.0002789 0.0000861 8631 28.80 1.434 0.554 2007-09-25T09:35:23.548451328 INFO 2025-06-26 13:38:22,262 calibrate.py _nudge_pos():1806 [1] 2658: 0.050 0.0000911 0.0000427 3301 11.03 1.224 0.718 2007-09-25T09:47:17.549538816 INFO 2025-06-26 13:38:22,306 calibrate.py _nudge_pos():1806 [1] 2662: 0.050 0.0000051 -0.0000302 39 0.13 5.800 -43.030 2007-09-25T09:47:28.548785408 INFO 2025-06-26 13:38:23,193 calibrate.py _nudge_pos():1806 [1] 2743: 0.060 -0.0001196 0.0004351 10995 36.68 -0.483 2.198 2007-09-25T10:25:29.542526720 INFO 2025-06-26 13:38:23,955 calibrate.py _nudge_pos():1806 [1] 2812: 0.060 0.0010932 0.0000429 2567 8.56 18.910 0.929 2007-09-25T10:35:11.542657024 INFO 2025-06-26 13:38:24,861 calibrate.py _nudge_pos():1806 [1] 2894: 0.070 0.0002125 -0.0001892 9247 30.85 1.021 -1.137 2007-09-25T11:07:23.540306176 INFO 2025-06-26 13:38:25,801 calibrate.py _nudge_pos():1806 [1] 2979: 0.070 0.0008750 0.0000582 2120 7.10 18.264 1.520 2007-09-25T11:15:53.545368320 INFO 2025-06-26 13:38:26,762 calibrate.py _nudge_pos():1806 [1] 3065: 0.070 0.0000131 0.0004729 10210 34.08 0.057 2.571 2007-09-25T11:51:23.549453056 INFO 2025-06-26 13:38:27,617 calibrate.py _nudge_pos():1806 [1] 3141: 0.070 0.0011013 0.0000887 2535 8.45 19.315 1.946 2007-09-25T12:01:05.549583104 INFO 2025-06-26 13:38:27,717 calibrate.py _nudge_pos():1806 [1] 3150: 0.070 -0.0000017 -0.0000210 40 0.13 -1.910 -29.911 2007-09-25T12:01:21.548487168 INFO 2025-06-26 13:38:28,398 calibrate.py _nudge_pos():1806 [1] 3211: 0.070 0.0002575 -0.0001753 9987 33.33 1.145 -0.974 2007-09-25T12:35:41.547367680 INFO 2025-06-26 13:38:28,432 calibrate.py _nudge_pos():1806 [1] 3214: 0.070 0.0000028 -0.0000223 105 0.35 1.187 -11.928 2007-09-25T12:36:04.545792000 INFO 2025-06-26 13:38:29,251 calibrate.py _nudge_pos():1806 [1] 3288: 0.070 0.0009262 0.0001201 2275 7.60 18.063 2.929 2007-09-25T12:44:53.549552896 INFO 2025-06-26 13:38:29,296 calibrate.py _nudge_pos():1806 [1] 3292: 0.070 -0.0000234 -0.0000228 25 0.08 -43.272 -52.786 2007-09-25T12:45:01.549004800 INFO 2025-06-26 13:38:29,940 calibrate.py _nudge_pos():1806 [1] 3350: 0.080 -0.0001403 0.0005003 9769 32.61 -0.637 2.842 2007-09-25T13:18:35.541037056 INFO 2025-06-26 13:38:30,964 calibrate.py _nudge_pos():1806 [1] 3441: 0.090 0.0002675 0.0001065 8840 29.50 1.343 0.669 2007-09-25T13:49:35.543618304 INFO 2025-06-26 13:38:31,653 calibrate.py _nudge_pos():1806 [1] 3500: 0.090 0.0000667 0.0000314 3458 11.53 0.857 0.504 2007-09-25T14:02:05.542239744 INFO 2025-06-26 13:38:32,416 calibrate.py _nudge_pos():1806 [1] 3565: 0.090 -0.0000307 0.0005001 10044 33.53 -0.136 2.764 2007-09-25T14:36:41.540024064 INFO 2025-06-26 13:38:32,462 calibrate.py _nudge_pos():1806 [1] 3569: 0.080 0.0000446 0.0000338 62 0.21 30.917 29.381 2007-09-25T14:36:57.548927232 INFO 2025-06-26 13:38:33,159 calibrate.py _nudge_pos():1806 [1] 3631: 0.100 0.0011188 0.0000707 2522 8.41 19.697 1.558 2007-09-25T14:46:23.540154368 INFO 2025-06-26 13:38:33,989 calibrate.py _nudge_pos():1806 [1] 3704: 0.090 0.0001737 -0.0001526 9922 33.10 0.778 -0.854 2007-09-25T15:20:41.549170944 INFO 2025-06-26 13:38:34,124 calibrate.py _nudge_pos():1862 [1] 3678: - - - 2 0.00 - - INFO 2025-06-26 13:38:34,124 calibrate.py _nudge_pos():1868 [1] Points in final series = 327459 WARNING 2025-06-26 13:38:34,563 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 9.09 Hz INFO 2025-06-26 13:39:09,335 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 6 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:39:27,905 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 57 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:39:29,878 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 57 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:39:29,882 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2007.267.04/ctd1.nc INFO 2025-06-26 13:39:29,884 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 13:39:29,884 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 13:39:29,884 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 13:39:44,494 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:39:46,492 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:39:46,496 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2007.267.04/ctd2.nc INFO 2025-06-26 13:39:46,498 calibrate.py _range_qc_combined_nc():898 [1] Setting 161 ctd2_salinity values to NaN INFO 2025-06-26 13:39:46,498 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 13:39:46,498 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 13:39:49,004 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 13:39:52,053 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 ... 3937287 3937288 3937289] INFO 2025-06-26 13:39:52,714 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -6 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 13:39:52,721 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 13:39:52,721 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2007.267.04 ERROR 2025-06-26 13:39:52,722 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2007.267.04 INFO 2025-06-26 13:39:52,777 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2007.267.04/dorado_2007.267.04_cal.nc INFO 2025-06-26 13:40:13,262 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 13:40:13,269 process.py align():251 [1] Alignment steps for 2007.267.04 INFO 2025-06-26 13:40:13,309 align.py process_cal():139 [1] Processing dorado_2007.267.04_cal.nc from /data/auv_data/dorado/missionnetcdfs/2007.267.04 INFO 2025-06-26 13:40:13,395 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:40:13,404 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 13:40:13,610 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:40:13,622 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 13:40:13,826 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:40:13,838 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 13:40:13,963 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 13:40:13,963 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 13:40:14,041 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:40:14,053 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 13:40:14,251 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.267.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:40:14,262 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:40:14,434 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.267.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:40:14,444 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:40:14,618 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.267.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:40:14,628 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:40:14,802 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.267.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:40:14,812 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:40:14,989 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.267.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:40:14,998 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:40:15,171 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.267.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:40:15,181 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:40:15,356 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.267.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:40:15,365 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:40:15,538 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.267.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:40:15,548 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:40:15,724 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.267.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:40:15,734 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:40:15,906 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.267.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:40:15,916 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:40:16,095 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.267.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:40:16,105 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:40:16,277 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.267.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:40:16,286 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:40:16,463 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.267.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:40:16,472 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:40:16,646 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.267.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:40:16,656 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:40:16,832 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.267.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:40:16,842 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:40:17,016 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.267.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:40:17,028 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:40:17,204 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.267.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:40:17,214 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:40:17,389 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.267.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:40:17,399 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:40:17,576 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.267.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:40:17,586 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:40:17,761 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.267.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:40:17,770 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:40:17,979 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.79 INFO 2025-06-26 13:40:18,112 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.79 INFO 2025-06-26 13:40:18,249 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.79 INFO 2025-06-26 13:40:18,391 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 13:40:18,534 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 1.02 INFO 2025-06-26 13:40:18,574 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2007.267.04/dorado_2007.267.04_align.nc INFO 2025-06-26 13:40:18,712 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 13:40:18,715 process.py resample():273 [1] Resampling steps for 2007.267.04 INFO 2025-06-26 13:40:18,715 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 13:40:18,749 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.267.04/dorado_2007.267.04_align.nc mission netCDF file INFO 2025-06-26 13:40:18,757 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.267.04/dorado_2007.267.04_align.nc mission netCDF file INFO 2025-06-26 13:40:18,759 resample.py get_mission_start_end():1145 [1] navigation: 2007-09-24T21:05:46.329602048 to 2007-09-25T15:20:52.968388864 (0 days 00:00:00 before mission_end) INFO 2025-06-26 13:40:18,762 resample.py get_mission_start_end():1145 [1] hs2 : 2007-09-24T21:05:21.381310976 to 2007-09-25T15:20:52.888394240 (0 days 00:00:00.079994624 before mission_end) INFO 2025-06-26 13:40:18,764 resample.py get_mission_start_end():1145 [1] ctd1 : 2007-09-24T21:06:12.407815424 to 2007-09-25T15:20:52.788401152 (0 days 00:00:00.179987712 before mission_end) INFO 2025-06-26 13:40:18,767 resample.py get_mission_start_end():1145 [1] ctd2 : 2007-09-24T21:05:42.059894272 to 2007-09-25T15:20:52.828398592 (0 days 00:00:00.139990272 before mission_end) INFO 2025-06-26 13:40:18,769 resample.py get_mission_start_end():1145 [1] isus : 2007-09-24T21:06:11.297891328 to 2007-09-25T15:20:52.498420992 (0 days 00:00:00.469967872 before mission_end) INFO 2025-06-26 13:40:18,771 resample.py get_mission_start_end():1145 [1] biolume : 2007-09-24T21:05:09.182112512 to 2007-09-25T15:20:52.058416896 (0 days 00:00:00.909971968 before mission_end) INFO 2025-06-26 13:40:18,772 resample.py get_mission_start_end():1145 [1] tailcone : 2007-09-24T21:05:16.661634304 to 2007-09-25T15:20:52.368429824 (0 days 00:00:00.599959040 before mission_end) INFO 2025-06-26 13:40:18,773 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.267.04/dorado_2007.267.04_align.nc mission netCDF file INFO 2025-06-26 13:40:18,773 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:19,438 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:19,545 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:19,649 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:19,753 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:19,842 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:19,930 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:20,018 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:20,106 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:20,188 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:20,271 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:20,353 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:20,434 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:20,518 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:20,600 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:20,681 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:20,764 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:20,849 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:20,936 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:21,028 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:21,115 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:21,204 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:21,289 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:21,323 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:21,351 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:21,378 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:21,411 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:21,443 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 13:40:21,914 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2007.267.04/dorado_2007.267.04_1S.nc INFO 2025-06-26 13:40:25,082 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 13:40:36,380 create_products.py gulper_odv():522 [1] Wrote 10 Gulper data lines to /data/auv_data/dorado/missionodvs/2007.267.04/dorado_2007.267.04_1S_Gulper.txt INFO 2025-06-26 13:40:36,380 process.py archive():337 [1] Archiving steps for 2007.267.04 INFO 2025-06-26 13:40:36,380 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2007.267.04/dorado_2007.267.04, BASE_PATH = /data/auv_data INFO 2025-06-26 13:40:36,382 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2007.267.04/dorado_2007.267.04 files to /Volumes/AUVCTD/surveys/2007/netcdf INFO 2025-06-26 13:40:36,382 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.267.04_1S.nc INFO 2025-06-26 13:40:36,425 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.267.04/dorado_2007.267.04_1S.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 13:40:36,427 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.267.04_cal.nc INFO 2025-06-26 13:40:36,663 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.267.04/dorado_2007.267.04_cal.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 13:40:36,664 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.267.04_align.nc INFO 2025-06-26 13:40:36,878 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.267.04/dorado_2007.267.04_align.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 13:40:36,947 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.267.04/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007267/2007.267.04 done. INFO 2025-06-26 13:40:37,011 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.267.04/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007267/2007.267.04 done. INFO 2025-06-26 13:40:37,016 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.267.04/gps.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007267/2007.267.04 done. INFO 2025-06-26 13:40:37,058 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.267.04/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007267/2007.267.04 done. INFO 2025-06-26 13:40:37,271 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.267.04/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007267/2007.267.04 done. INFO 2025-06-26 13:40:37,283 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.267.04/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007267/2007.267.04 done. 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INFO 2025-06-26 13:40:37,547 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 13:40:37,548 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2007/odv/dorado_2007.267.04_1S_Gulper.txt INFO 2025-06-26 13:40:37,553 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2007.267.04/dorado_2007.267.04_1S_Gulper.txt /Volumes/AUVCTD/surveys/2007/odv done. INFO 2025-06-26 13:40:37,553 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.267.04/dorado_2007.267.04_processing.log /Volumes/AUVCTD/surveys/2007/netcdf