INFO 2025-06-26 13:07:11,156 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 13:07:11,156 process.py process_mission():434 [1] dorado_info[mission]["comment"] = OCCO mission - Incubation area flux track - CTD1 clogged or something at end - in conjunction with ESP deployments - ctdToUse = ctd2 INFO 2025-06-26 13:07:11,156 process.py process_mission():449 [1] Processing OCCO mission 2007.247.05 by user docker_user on host eae60d30a712 INFO 2025-06-26 13:07:11,156 process.py download_process():165 [1] Download and processing steps for 2007.247.05 INFO 2025-06-26 13:07:11,156 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2007/2007247/2007.247.05 INFO 2025-06-26 13:07:11,156 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2007/2007247/2007.247.05 to /data/auv_data/dorado/missionlogs/2007.247.05 INFO 2025-06-26 13:07:17,948 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2007.247.05 INFO 2025-06-26 13:07:17,948 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.247.05/ctdDriver.log (22631707 bytes) INFO 2025-06-26 13:07:19,530 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.247.05/ctdDriver.log: [ 18 229 467 627 868 996 1006 1533 1656 1765 2003 2340 2380 2506 2603 3031 3467 3531 3546 3779 4412 4593 5170 5257 5308 5540 6705 6762 7640 7644 7794 7822 8362 10001 10627 11693 11803 11926 13733 15088 15782 16761 17770 18096 18655 18963 19169 19297 22729 23892 25370 25682 26643 27324 32087 33119 33729 35315 35895 39187 40116 52237 56403 58957 60660 65002 65673 69523 72389 72700 74142 75487 76694 78149 79104 83874 86698 89714 91466 92531 93151 98577 99250 100654 105967 106589 106776 111370 112681 118168 119393 123160 126109 126461 126653 129101 132822 136394 138162 144056 145074 146328 152012 153171 153736 166398 167962 172525 173112 175074 179012 186541 188304 190674 196410 203525 210411 210637 220115 220678 224060 224422 225830 226831 231978 232301 234653 241904 253319 253691] INFO 2025-06-26 13:07:19,594 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.247.05/ctdDriver2.log (22622901 bytes) INFO 2025-06-26 13:07:21,186 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.247.05/ctdDriver2.log: [ 111 349 509 877 1414 1536 1645 1883 2111 2221 2260 2386 2483 2911 3411 3426 3659 4292 4473 5050 5137 5188 5420 6585 7524 7674 7702 8242 9881 10507 11328 11572 11682 11805 14966 15660 16639 17649 17975 18534 18842 19048 19176 22607 23770 25561 25960 26522 27203 31967 33608 35194 39069 39665 39998 45094 52120 56286 56511 58840 60543 62526 64887 65558 69408 72274 72585 74027 75373 76581 78990 83760 86358 86586 92418 93038 98463 99137 100541 105853 106474 106661 108983 110184 111256 112567 115545 118056 119281 123048 125997 126541 132708 136281 138049 139390 140280 143944 146214 151896 153054 153619 154267 156146 157848 166282 167845 172407 172995 174957 178681 178897 182707 186430 188193 195905 196301 202027 202794 203419 210309 210537 220012 220575 223957 226727 231876 232199 234550 235577 240211 241803 245601 253216 253589 257037] INFO 2025-06-26 13:07:21,262 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.247.05/gps.log (211028 bytes) INFO 2025-06-26 13:07:21,294 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.247.05/hydroscatlog.log (15438314 bytes) INFO 2025-06-26 13:07:23,097 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.247.05/hydroscatlog.log: [ 1 6 7 9 10 11 13 14 84 95 109 111 216 238 481 542 562 723 835 847 900 1075 1092 1096 1106 1131 1439 1634 1635 1637 1677 1701 1869 2107 2188 2339 2398 2451 2469 2494 2518 2970 3046 3280 3462 3530 3585 3649 3664 3667 3776 3898 4274 4524 4621 4714 5128 5228 5256 5374 5394 5665 5822 6888 7707 7766 7920 7948 8488 8692 10100 10129 10509 10596 10755 10849 11503 11575 11820 11931 12054 12064 12991 15913 17150 18230 18789 19098 22661 23573 24025 25669 25717 25743 25818 26218 26781 27117 27460 28645 29078 32222 32223 32934 33865 33918 34316 35452 35705 36032 38942 38996 39325 40052 40255 40256 40610 40773 40935 43547 45352 45664 46387 47170 52375 53273 54281 55770 56539 56762 57742 61157 61396 63273 63478 65138 68509 69320 69658 69659 70780 72044 72523 72834 72835 76563 76829 78283 79892 81573 82738 83411 84010 85785 85954 85955 86608 86836 89850 93286 93287 95962 96784 98711 103343 105080 105407 106099 106721 106909 109230 110431 111187 112813 116658 118300 119217 123276 123289 125410 125437 126239 126240 126592 126784 129230 138290 139629 142936 143208 144183 145200 146455 152135 153092 154508 154509 156386 157603 160795 160972 166321 175193 175790 176889 178054 179135 179948 181911 182309 182943 183091 183298 186182 188425 188426 190797 193376 196135 196531 197422 200087 203646 205665 205742 206089 206810 213296 213521 214088 219245 219246 220235 222952 224180 224985 225951 226953 229575 229576 232420 233665 234772 234773 235798 235882 239208 240377 240432 242885 243298 245822 246323 247095 253809 253810 255779 256527 257256] INFO 2025-06-26 13:07:23,145 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.247.05/navigation.log (75798134 bytes) INFO 2025-06-26 13:07:28,595 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.247.05/isuslog.log (0 bytes) WARNING 2025-06-26 13:07:28,595 logs2netcdfs.py download_process_logs():790 [1] /data/auv_data/dorado/missionlogs/2007.247.05/isuslog.log is empty INFO 2025-06-26 13:07:28,595 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.247.05/parosci.log (27049718 bytes) INFO 2025-06-26 13:07:30,945 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.247.05/tailCone.log (3138907 bytes) INFO 2025-06-26 13:07:31,342 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.247.05/biolume.log (17511500 bytes) INFO 2025-06-26 13:07:33,034 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 13:07:33,925 logs2netcdfs.py download_process_logs():807 [1] Time to process: 15.98 seconds WARNING 2025-06-26 13:07:33,926 process.py download_process():196 [1] No lopc.bin file for 2007.247.05 INFO 2025-06-26 13:07:33,926 process.py calibrate():227 [1] Calibration steps for 2007.247.05 INFO 2025-06-26 13:07:34,347 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 13:07:34,349 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 13:07:34,918 calibrate.py _nudge_pos():1806 [1] 81: 0.140 0.0000231 0.0000053 20 0.06 54.139 15.620 2007-09-04T21:35:11.934658560 INFO 2025-06-26 13:07:35,155 calibrate.py _nudge_pos():1806 [1] 103: 0.150 -0.0000109 0.0000034 15 0.05 -34.546 13.612 2007-09-04T21:35:35.933014528 INFO 2025-06-26 13:07:35,240 calibrate.py _nudge_pos():1806 [1] 111: 0.150 0.0000011 0.0000100 15 0.05 3.444 39.551 2007-09-04T21:35:45.932329728 INFO 2025-06-26 13:07:35,758 calibrate.py _nudge_pos():1806 [1] 158: 0.150 -0.0000008 -0.0000128 19 0.06 -1.920 -37.411 2007-09-04T21:36:35.928904448 INFO 2025-06-26 13:07:36,102 calibrate.py _nudge_pos():1806 [1] 192: 0.150 0.0004914 -0.0002757 1843 6.25 11.666 -8.177 2007-09-04T21:43:23.930954496 INFO 2025-06-26 13:07:36,219 calibrate.py _nudge_pos():1806 [1] 203: 0.150 -0.0000064 -0.0000914 35 0.11 -8.383 -149.512 2007-09-04T21:43:40.929789952 INFO 2025-06-26 13:07:36,570 calibrate.py _nudge_pos():1806 [1] 237: 0.140 -0.0000080 -0.0000594 30 0.10 -12.341 -113.937 2007-09-04T21:44:19.937117696 INFO 2025-06-26 13:07:36,864 calibrate.py _nudge_pos():1806 [1] 266: 0.150 0.0001408 -0.0008117 12390 41.50 0.503 -3.625 2007-09-04T22:26:17.934623232 INFO 2025-06-26 13:07:37,526 calibrate.py _nudge_pos():1806 [1] 332: 0.160 0.0000397 -0.0000092 90 0.30 19.829 -5.728 2007-09-04T22:27:40.928937728 INFO 2025-06-26 13:07:37,566 calibrate.py _nudge_pos():1806 [1] 336: 0.150 0.0000941 -0.0006705 12682 42.35 0.329 -2.934 2007-09-04T23:10:05.934592768 INFO 2025-06-26 13:07:38,135 calibrate.py _nudge_pos():1806 [1] 392: 0.160 -0.0000074 0.0000047 15 0.05 -23.667 18.593 2007-09-04T23:11:03.930619648 INFO 2025-06-26 13:07:38,331 calibrate.py _nudge_pos():1806 [1] 411: 0.160 0.0001463 -0.0006211 11603 38.73 0.560 -2.972 2007-09-04T23:50:05.930181888 INFO 2025-06-26 13:07:38,373 calibrate.py _nudge_pos():1806 [1] 415: 0.170 0.0000056 0.0000093 40 0.13 6.363 13.239 2007-09-04T23:50:16.929428224 INFO 2025-06-26 13:07:38,607 calibrate.py _nudge_pos():1806 [1] 438: 0.160 -0.0000089 -0.0000190 50 0.16 -8.096 -21.549 2007-09-04T23:50:48.937235712 INFO 2025-06-26 13:07:39,066 calibrate.py _nudge_pos():1806 [1] 482: 0.160 0.0000564 -0.0000450 20 0.06 132.155 -131.555 2007-09-04T23:51:35.934016256 INFO 2025-06-26 13:07:39,137 calibrate.py _nudge_pos():1806 [1] 489: 0.160 -0.0000459 0.0000447 15 0.05 -145.761 177.481 2007-09-04T23:51:44.933399552 INFO 2025-06-26 13:07:39,188 calibrate.py _nudge_pos():1806 [1] 494: 0.160 -0.0000054 0.0000019 15 0.05 -17.285 7.658 2007-09-04T23:51:51.932920320 INFO 2025-06-26 13:07:39,240 calibrate.py _nudge_pos():1806 [1] 499: 0.170 -0.0007537 -0.0008144 12483 41.68 -2.682 -3.621 2007-09-05T00:33:36.931316224 INFO 2025-06-26 13:07:39,960 calibrate.py _nudge_pos():1806 [1] 565: 0.160 0.0000116 -0.0000254 15 0.05 36.927 -101.040 2007-09-05T00:34:44.936657408 INFO 2025-06-26 13:07:40,004 calibrate.py _nudge_pos():1806 [1] 569: 0.180 -0.0001733 -0.0006098 12209 40.73 -0.631 -2.774 2007-09-05T01:15:31.929026816 INFO 2025-06-26 13:07:40,645 calibrate.py _nudge_pos():1806 [1] 624: 0.170 0.0000218 -0.0000004 55 0.18 17.967 -0.442 2007-09-05T01:16:36.934573568 INFO 2025-06-26 13:07:41,345 calibrate.py _nudge_pos():1806 [1] 690: 0.180 0.0001465 -0.0004542 10275 34.30 0.634 -2.454 2007-09-05T01:51:59.929138688 INFO 2025-06-26 13:07:42,293 calibrate.py _nudge_pos():1806 [1] 781: 0.180 -0.0000144 -0.0000373 20 0.06 -33.762 -109.260 2007-09-05T01:53:35.932561920 INFO 2025-06-26 13:07:42,764 calibrate.py _nudge_pos():1806 [1] 827: 0.180 0.0001250 -0.0001854 4919 16.41 1.130 -2.093 2007-09-05T02:10:47.931865088 INFO 2025-06-26 13:07:43,510 calibrate.py _nudge_pos():1806 [1] 899: 0.190 -0.0003243 -0.0001622 12246 40.86 -1.177 -0.735 2007-09-05T02:52:50.929028096 INFO 2025-06-26 13:07:44,128 calibrate.py _nudge_pos():1806 [1] 957: 0.180 -0.0000203 -0.0000157 25 0.08 -37.660 -36.395 2007-09-05T02:53:52.934780416 INFO 2025-06-26 13:07:44,549 calibrate.py _nudge_pos():1806 [1] 998: 0.190 -0.0001604 -0.0001239 6705 22.36 -1.063 -1.027 2007-09-05T03:16:54.930107136 INFO 2025-06-26 13:07:44,571 calibrate.py _nudge_pos():1806 [1] 1000: 0.190 -0.0000008 -0.0000035 90 0.30 -0.398 -2.201 2007-09-05T03:17:13.928805632 INFO 2025-06-26 13:07:45,207 calibrate.py _nudge_pos():1806 [1] 1062: 0.180 -0.0000689 -0.0000984 4237 14.15 -0.722 -1.288 2007-09-05T03:32:23.936465664 INFO 2025-06-26 13:07:45,926 calibrate.py _nudge_pos():1806 [1] 1132: 0.190 -0.0001422 -0.0000183 12904 43.05 -0.490 -0.079 2007-09-05T04:16:35.934791680 INFO 2025-06-26 13:07:46,752 calibrate.py _nudge_pos():1806 [1] 1212: 0.190 -0.0001379 0.0000434 12876 42.98 -0.476 0.187 2007-09-05T05:00:53.932706048 INFO 2025-06-26 13:07:46,817 calibrate.py _nudge_pos():1806 [1] 1218: 0.200 -0.0000065 -0.0000179 115 0.38 -2.536 -8.726 2007-09-05T05:01:21.930788352 INFO 2025-06-26 13:07:47,462 calibrate.py _nudge_pos():1806 [1] 1280: 0.200 -0.0001419 0.0001135 12838 42.81 -0.491 0.491 2007-09-05T05:45:11.930620928 INFO 2025-06-26 13:07:47,485 calibrate.py _nudge_pos():1806 [1] 1282: 0.010 -0.0000031 0.0000090 125 0.41 -1.111 4.038 2007-09-05T05:45:38.128826112 INFO 2025-06-26 13:07:48,340 calibrate.py _nudge_pos():1806 [1] 1363: 0.200 -0.0001330 0.0001787 12085 40.33 -0.489 0.821 2007-09-05T06:27:17.937577472 INFO 2025-06-26 13:07:49,339 calibrate.py _nudge_pos():1806 [1] 1457: 0.010 -0.0001359 0.0001931 11830 39.45 -0.511 0.907 2007-09-05T07:08:18.129042944 INFO 2025-06-26 13:07:49,393 calibrate.py _nudge_pos():1806 [1] 1462: 0.200 -0.0000016 0.0000150 149 0.49 -0.484 5.617 2007-09-05T07:08:51.936726784 INFO 2025-06-26 13:07:50,089 calibrate.py _nudge_pos():1806 [1] 1527: 0.010 -0.0000498 0.0000792 4035 13.46 -0.548 1.090 2007-09-05T07:23:24.136976896 INFO 2025-06-26 13:07:50,143 calibrate.py _nudge_pos():1806 [1] 1532: 0.010 0.0000384 0.0000092 15 0.05 121.940 36.712 2007-09-05T07:23:31.136497408 INFO 2025-06-26 13:07:50,154 calibrate.py _nudge_pos():1806 [1] 1533: 0.010 -0.0000484 0.0000022 15 0.05 -153.729 8.566 2007-09-05T07:23:34.136292096 INFO 2025-06-26 13:07:51,120 calibrate.py _nudge_pos():1806 [1] 1622: 0.010 0.0000315 -0.0001282 12125 40.46 0.115 -0.587 2007-09-05T08:05:30.133934592 INFO 2025-06-26 13:07:51,965 calibrate.py _nudge_pos():1806 [1] 1699: 0.010 -0.0000256 -0.0000613 5881 19.63 -0.193 -0.579 2007-09-05T08:26:24.138029312 INFO 2025-06-26 13:07:52,681 calibrate.py _nudge_pos():1806 [1] 1765: 0.020 0.0000402 -0.0000301 3602 12.01 0.495 -0.464 2007-09-05T08:39:30.134184960 INFO 2025-06-26 13:07:53,437 calibrate.py _nudge_pos():1806 [1] 1833: 0.020 0.0002146 -0.0005575 11804 39.38 0.807 -2.623 2007-09-05T09:20:00.137718272 INFO 2025-06-26 13:07:54,187 calibrate.py _nudge_pos():1806 [1] 1900: 0.040 0.0001053 -0.0002748 6869 22.90 0.681 -2.224 2007-09-05T09:44:00.129071872 INFO 2025-06-26 13:07:54,242 calibrate.py _nudge_pos():1806 [1] 1905: 0.030 0.0000188 -0.0000072 122 0.41 6.750 -3.222 2007-09-05T09:44:29.137084928 INFO 2025-06-26 13:07:55,011 calibrate.py _nudge_pos():1806 [1] 1975: 0.030 0.0001075 -0.0002642 7303 24.36 0.654 -2.009 2007-09-05T10:10:00.132204544 INFO 2025-06-26 13:07:55,814 calibrate.py _nudge_pos():1806 [1] 2045: 0.040 0.0001283 -0.0003279 9393 31.35 0.606 -1.938 2007-09-05T10:42:30.128620544 INFO 2025-06-26 13:07:55,838 calibrate.py _nudge_pos():1806 [1] 2047: 0.030 -0.0000141 -0.0000161 100 0.33 -6.320 -9.032 2007-09-05T10:42:51.137181440 INFO 2025-06-26 13:07:56,661 calibrate.py _nudge_pos():1806 [1] 2121: 0.040 0.0001647 -0.0004354 12423 41.43 0.589 -1.947 2007-09-05T11:25:30.131878400 INFO 2025-06-26 13:07:56,673 calibrate.py _nudge_pos():1806 [1] 2122: 0.040 0.0000320 0.0000549 120 0.40 11.953 25.657 2007-09-05T11:25:54.130234368 INFO 2025-06-26 13:07:57,376 calibrate.py _nudge_pos():1806 [1] 2186: 0.040 0.0000989 -0.0000894 3640 12.15 1.207 -1.364 2007-09-05T11:39:06.135978240 INFO 2025-06-26 13:07:57,597 calibrate.py _nudge_pos():1806 [1] 2206: 0.040 0.0000353 -0.0000677 40 0.13 40.264 -96.490 2007-09-05T11:39:33.134128640 INFO 2025-06-26 13:07:58,022 calibrate.py _nudge_pos():1806 [1] 2244: 0.050 0.0017372 0.0021789 13433 44.83 5.741 9.006 2007-09-05T12:25:00.137316352 INFO 2025-06-26 13:07:58,734 calibrate.py _nudge_pos():1806 [1] 2308: 0.050 0.0021040 0.0022585 12362 41.25 7.559 10.146 2007-09-05T13:07:18.133451520 INFO 2025-06-26 13:07:59,642 calibrate.py _nudge_pos():1806 [1] 2388: 0.060 0.0024223 0.0024173 12251 40.88 8.783 10.957 2007-09-05T13:49:30.129997824 INFO 2025-06-26 13:08:00,508 calibrate.py _nudge_pos():1806 [1] 2464: 0.060 0.0023996 0.0021204 12272 40.95 8.689 9.596 2007-09-05T14:31:42.136543488 INFO 2025-06-26 13:08:00,605 calibrate.py _nudge_pos():1806 [1] 2471: 0.060 -0.0000185 -0.0000023 90 0.30 -9.266 -1.465 2007-09-05T14:32:06.134899712 INFO 2025-06-26 13:08:01,340 calibrate.py _nudge_pos():1806 [1] 2535: 0.070 0.0018425 0.0016251 9569 31.93 8.557 9.431 2007-09-05T15:05:06.129260544 INFO 2025-06-26 13:08:02,275 calibrate.py _nudge_pos():1806 [1] 2617: 0.070 0.0008482 0.0005556 3880 12.95 9.717 7.952 2007-09-05T15:19:24.130483456 INFO 2025-06-26 13:08:03,045 calibrate.py _nudge_pos():1806 [1] 2685: 0.060 0.0000632 -0.0000145 625 2.08 4.510 -1.295 2007-09-05T15:22:36.137330176 INFO 2025-06-26 13:08:05,746 calibrate.py _nudge_pos():1862 [1] 2885: - - - 0 0.00 - - INFO 2025-06-26 13:08:05,746 calibrate.py _nudge_pos():1868 [1] Points in final series = 320967 WARNING 2025-06-26 13:08:06,174 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 9.09 Hz INFO 2025-06-26 13:08:38,416 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 2 of 257031 INFO 2025-06-26 13:08:40,348 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 1 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:08:58,504 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 23 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:09:00,444 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 23 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:09:00,448 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2007.247.05/ctd1.nc INFO 2025-06-26 13:09:00,449 calibrate.py _range_qc_combined_nc():898 [1] Setting 2 ctd1_salinity values to NaN INFO 2025-06-26 13:09:00,450 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 13:09:00,450 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 13:09:14,659 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 54 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 13:09:16,583 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 54 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 13:09:16,588 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2007.247.05/ctd2.nc INFO 2025-06-26 13:09:16,589 calibrate.py _range_qc_combined_nc():898 [1] Setting 52 ctd2_salinity values to NaN INFO 2025-06-26 13:09:16,590 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 13:09:16,590 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 13:09:16,590 calibrate.py process_logs():3542 [1] Error processing isus: isus has no orig_data - likely a missing or zero-sized .log file in missionlogs/2007.247.05 INFO 2025-06-26 13:09:16,639 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 13:09:19,663 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 ... 3803830 3861720 3861721] INFO 2025-06-26 13:09:20,228 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -5 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 13:09:20,235 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 13:09:20,235 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2007.247.05 ERROR 2025-06-26 13:09:20,235 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2007.247.05 INFO 2025-06-26 13:09:20,289 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2007.247.05/dorado_2007.247.05_cal.nc INFO 2025-06-26 13:09:40,480 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 13:09:40,485 process.py align():251 [1] Alignment steps for 2007.247.05 INFO 2025-06-26 13:09:40,525 align.py process_cal():139 [1] Processing dorado_2007.247.05_cal.nc from /data/auv_data/dorado/missionnetcdfs/2007.247.05 INFO 2025-06-26 13:09:40,609 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:09:40,617 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 13:09:40,817 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:09:40,828 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 13:09:41,028 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:09:41,040 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 13:09:41,158 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 13:09:41,158 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 13:09:41,238 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:09:41,249 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 13:09:41,443 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.247.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:09:41,453 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:09:41,624 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.247.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:09:41,633 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:09:41,805 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.247.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:09:41,814 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:09:41,986 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.247.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:09:41,996 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:09:42,175 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.247.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:09:42,186 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:09:42,357 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.247.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:09:42,367 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:09:42,539 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.247.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:09:42,548 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:09:42,724 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.247.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:09:42,733 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:09:42,906 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.247.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:09:42,915 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:09:43,089 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.247.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:09:43,099 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:09:43,270 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.247.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:09:43,281 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:09:43,462 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.247.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:09:43,471 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:09:43,642 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.247.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:09:43,650 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:09:43,822 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.247.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:09:43,831 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:09:44,008 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.247.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:09:44,018 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:09:44,190 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.247.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:09:44,199 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:09:44,373 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.247.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:09:44,383 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:09:44,552 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.247.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:09:44,561 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:09:44,733 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.247.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:09:44,743 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:09:44,915 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.247.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:09:44,924 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 13:09:45,139 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 13:09:45,274 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 1.02 INFO 2025-06-26 13:09:45,312 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2007.247.05/dorado_2007.247.05_align.nc INFO 2025-06-26 13:09:45,444 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 13:09:45,446 process.py resample():273 [1] Resampling steps for 2007.247.05 INFO 2025-06-26 13:09:45,446 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 13:09:45,475 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.247.05/dorado_2007.247.05_align.nc mission netCDF file INFO 2025-06-26 13:09:45,482 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.247.05/dorado_2007.247.05_align.nc mission netCDF file INFO 2025-06-26 13:09:45,484 resample.py get_mission_start_end():1145 [1] navigation: 2007-09-04T21:34:21.668102144 to 2007-09-05T15:26:29.131368960 (0 days 00:00:00.139990528 before mission_end) INFO 2025-06-26 13:09:45,487 resample.py get_mission_start_end():1145 [1] hs2 : 2007-09-04T21:33:57.999723520 to 2007-09-05T15:26:29.121369600 (0 days 00:00:00.149989888 before mission_end) INFO 2025-06-26 13:09:45,489 resample.py get_mission_start_end():1145 [1] ctd1 : 2007-09-04T21:34:17.208407552 to 2007-09-05T15:26:29.141368064 (0 days 00:00:00.129991424 before mission_end) INFO 2025-06-26 13:09:45,492 resample.py get_mission_start_end():1145 [1] ctd2 : 2007-09-04T21:34:47.456335616 to 2007-09-05T15:26:29.271359488 (0 days 00:00:00 before mission_end) INFO 2025-06-26 13:09:45,494 resample.py get_mission_start_end():1145 [1] biolume : 2007-09-04T21:33:47.940378112 to 2007-09-05T15:26:28.461380608 (0 days 00:00:00.809978880 before mission_end) INFO 2025-06-26 13:09:45,495 resample.py get_mission_start_end():1145 [1] tailcone : 2007-09-04T21:33:51.660157696 to 2007-09-05T15:26:28.631403264 (0 days 00:00:00.639956224 before mission_end) INFO 2025-06-26 13:09:45,496 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.247.05/dorado_2007.247.05_align.nc mission netCDF file INFO 2025-06-26 13:09:45,496 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:46,188 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:46,292 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:46,393 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:46,495 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:46,583 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:46,669 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:46,753 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:46,838 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:46,919 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:46,999 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:47,081 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:47,163 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:47,242 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:47,322 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:47,403 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:47,483 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:47,566 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:47,653 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:47,742 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:47,825 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:47,909 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:47,994 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:48,032 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:48,066 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 13:09:48,508 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2007.247.05/dorado_2007.247.05_1S.nc INFO 2025-06-26 13:09:51,584 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd2 INFO 2025-06-26 13:10:02,316 create_products.py gulper_odv():522 [1] Wrote 10 Gulper data lines to /data/auv_data/dorado/missionodvs/2007.247.05/dorado_2007.247.05_1S_Gulper.txt INFO 2025-06-26 13:10:02,317 process.py archive():337 [1] Archiving steps for 2007.247.05 INFO 2025-06-26 13:10:02,317 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2007.247.05/dorado_2007.247.05, BASE_PATH = /data/auv_data INFO 2025-06-26 13:10:02,318 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2007.247.05/dorado_2007.247.05 files to /Volumes/AUVCTD/surveys/2007/netcdf INFO 2025-06-26 13:10:02,319 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.247.05_1S.nc INFO 2025-06-26 13:10:02,356 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.247.05/dorado_2007.247.05_1S.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 13:10:02,357 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.247.05_cal.nc INFO 2025-06-26 13:10:02,578 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.247.05/dorado_2007.247.05_cal.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 13:10:02,579 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.247.05_align.nc INFO 2025-06-26 13:10:02,778 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.247.05/dorado_2007.247.05_align.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 13:10:02,844 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.247.05/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007247/2007.247.05 done. INFO 2025-06-26 13:10:02,905 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.247.05/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007247/2007.247.05 done. INFO 2025-06-26 13:10:02,911 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.247.05/gps.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007247/2007.247.05 done. INFO 2025-06-26 13:10:02,951 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.247.05/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007247/2007.247.05 done. INFO 2025-06-26 13:10:03,141 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.247.05/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007247/2007.247.05 done. INFO 2025-06-26 13:10:03,218 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.247.05/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007247/2007.247.05 done. INFO 2025-06-26 13:10:03,232 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.247.05/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007247/2007.247.05 done. INFO 2025-06-26 13:10:03,391 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.247.05/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007247/2007.247.05 done. INFO 2025-06-26 13:10:03,391 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 13:10:03,393 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2007/odv/dorado_2007.247.05_1S_Gulper.txt INFO 2025-06-26 13:10:03,398 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2007.247.05/dorado_2007.247.05_1S_Gulper.txt /Volumes/AUVCTD/surveys/2007/odv done. INFO 2025-06-26 13:10:03,398 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.247.05/dorado_2007.247.05_processing.log /Volumes/AUVCTD/surveys/2007/netcdf