INFO 2025-06-26 13:01:01,516 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 13:01:01,516 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Northern shelf, then cross-bay - ctdToUse = ctd1 INFO 2025-06-26 13:01:01,516 process.py process_mission():449 [1] Processing AUVCTD mission 2007.235.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 13:01:01,516 process.py download_process():165 [1] Download and processing steps for 2007.235.00 INFO 2025-06-26 13:01:01,516 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2007/2007235/2007.235.00 INFO 2025-06-26 13:01:01,517 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2007/2007235/2007.235.00 to /data/auv_data/dorado/missionlogs/2007.235.00 INFO 2025-06-26 13:01:07,988 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2007.235.00 INFO 2025-06-26 13:01:07,988 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.235.00/ctdDriver.log (23141579 bytes) INFO 2025-06-26 13:01:09,749 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.235.00/ctdDriver.log: [ 117 218 434 525 528 631 662 672 831 961 1073 1160 1423 1500 1660 1733 1789 1901 2132 2196 2252 2317 2688 2732 3178 3380 3387 3412 3868 4145 4575 4744 4761 4965 5046 5072 5842 6258 7135 7607 7671 10425 10636 10735 11128 11496 11719 12786 13216 13686 14159 15138 15882 16890 17066 17224 17833 19365 20192 20708 21676 23725 24200 25605 26566 26868 28214 29257 29344 33482 34300 35425 35704 36712 38407 43208 43427 44060 44078 48200 49027 50711 50773 52629 53403 53997 54245 54263 57490 59746 60967 62015 66277 66863 74194 77640 80724 80898 81090 83297 83377 84355 86837 88230 90133 93357 93581 97789 103234 103346 104502 108632 109547 110737 111219 123672 124182 124649 125094 125742 130158 131366 134021 143939 144792 151505 152402 154470 154496 155101 155747 157101 159338 160050 164630 164937 166452 171649 173562 173877 178249 180679 185146 193813 194907 195010 205230 215751 216148 216251 218661 219931 223361 223895 225375 229967 230474 230754 236091 237585 238254 238803 244457 244698 244805 245518 246972 248855 252235 253259 253631 254955 258953 259296 260763] INFO 2025-06-26 13:01:09,822 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.235.00/ctdDriver2.log (23146501 bytes) INFO 2025-06-26 13:01:11,525 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.235.00/ctdDriver2.log: [ 22 146 467 558 560 664 696 706 740 865 994 1195 1425 1459 1536 1577 1697 1770 1826 1937 2171 2173 2293 2359 2588 2730 2774 3169 3421 3428 3453 3906 4185 4615 4801 4832 5114 5886 6303 7179 7223 7653 7716 7811 8862 10466 10679 10778 11172 11539 11761 11763 13722 14198 15924 17106 17262 17875 19408 20235 20751 24238 24825 25643 25656 26603 26908 28255 29386 29633 30683 31464 33521 35747 36755 37215 38450 43255 44108 44127 47662 48250 49078 50763 50826 52682 53456 54049 54296 55043 58273 59801 61024 66332 66919 71615 73278 73431 77696 80782 81147 84411 86892 88284 90186 91501 93409 95371 102480 103281 103394 103470 104551 109592 112411 113407 123719 123770 124227 125138 125139 125787 127290 131410 134069 144839 151130 151552 154519 154545 155150 155795 157149 159388 160100 164681 164988 166503 170256 170796 171703 173617 180732 185200 193298 194960 195064 205284 215805 216304 218714 219983 223304 223414 225428 230021 230529 230809 236146 237641 238859 244514 244755 244862 245574 247028 248910 249561 252291 253316 253688 255012 259009 259352 260819] INFO 2025-06-26 13:01:11,604 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.235.00/gps.log (212252 bytes) INFO 2025-06-26 13:01:11,635 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.235.00/hydroscatlog.log (15791294 bytes) INFO 2025-06-26 13:01:13,499 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.235.00/hydroscatlog.log: [ 4 5 6 8 9 13 56 242 331 346 564 656 794 804 848 912 1083 1096 1135 1210 1427 1529 1597 1641 1642 1803 1876 1933 2044 2278 2280 2344 2401 2467 2523 2697 2840 2884 2885 3164 3280 3332 3458 3543 3568 3780 4023 4301 4302 4732 4950 5082 5125 5126 5346 5381 5670 6353 6424 6425 7302 7346 7642 7776 7840 7939 7940 8040 10812 10912 11202 11306 11307 11582 11677 11899 11900 11901 12066 12968 13072 13182 13760 13868 14344 16072 17265 17286 19574 19732 20400 20401 20917 22317 23071 24036 24146 24997 25571 25817 26781 28432 28433 29476 29564 29565 30865 30866 31650 32813 34536 35662 35939 36948 38281 38644 40876 41486 43665 43666 44298 44310 44317 47850 47851 48438 49266 50951 50952 51015 52868 54237 54503 57314 57732 58460 59987 61145 64451 66519 71076 71165 73464 75006 77880 80965 81138 81330 81331 83618 84595 87077 88468 90371 91687 93080 94380 95557 95971 97791 102665 103467 104735 104831 108863 108864 109779 111452 116892 118166 123902 124412 124878 125324 125972 125973 127475 127476 128810 130388 131118 134201 138232 140971 144165 145018 148466 152628 154724 155329 157327 158448 159566 160276 163158 163472 166677 171873 173787 174102 175084 176450 177303 178591 180901 180902 185367 188011 192013 193462 194030 194031 195125 195254 195454 198733 198967 200274 202240 203796 205440 208468 209353 213968 215967 216466 216467 218877 220145 222791 223577 224109 225335 225590 230181 230476 230968 230969 233904 236304 237798 238466 239017 244908 245016 245221 245966 246620 247185 247931 247932 249066 249136 252025 252446 253470 255167 257035 259162 260970 260971] INFO 2025-06-26 13:01:13,553 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.235.00/navigation.log (77531790 bytes) INFO 2025-06-26 13:01:19,288 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.235.00/isuslog.log (1556693 bytes) INFO 2025-06-26 13:01:19,437 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.235.00/isuslog.log: [1 2 3 4 5 6 7] INFO 2025-06-26 13:01:19,442 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.235.00/parosci.log (27664982 bytes) INFO 2025-06-26 13:01:21,789 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.235.00/tailCone.log (3208699 bytes) INFO 2025-06-26 13:01:22,199 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.235.00/biolume.log (17911068 bytes) INFO 2025-06-26 13:01:23,932 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 13:01:24,848 logs2netcdfs.py download_process_logs():807 [1] Time to process: 16.86 seconds WARNING 2025-06-26 13:01:24,849 process.py download_process():196 [1] No lopc.bin file for 2007.235.00 INFO 2025-06-26 13:01:24,849 process.py calibrate():227 [1] Calibration steps for 2007.235.00 INFO 2025-06-26 13:01:25,281 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 13:01:25,284 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 13:01:26,020 calibrate.py _nudge_pos():1806 [1] 98: 0.050 -0.0000015 -0.0000226 15 0.05 -4.720 -89.682 2007-08-23T23:08:26.327504384 INFO 2025-06-26 13:01:26,382 calibrate.py _nudge_pos():1806 [1] 133: 0.050 0.0010309 -0.0000439 3602 12.18 12.555 -0.668 2007-08-23T23:21:11.325098240 INFO 2025-06-26 13:01:27,063 calibrate.py _nudge_pos():1806 [1] 199: 0.050 -0.0000140 -0.0000028 15 0.05 -44.364 -11.213 2007-08-23T23:22:19.330439680 INFO 2025-06-26 13:01:27,096 calibrate.py _nudge_pos():1806 [1] 202: 0.050 -0.0000130 0.0000389 3378 11.33 -0.170 0.637 2007-08-23T23:33:41.323719936 INFO 2025-06-26 13:01:28,087 calibrate.py _nudge_pos():1806 [1] 297: 0.050 -0.0000309 -0.0000025 6255 20.93 -0.219 -0.022 2007-08-23T23:56:11.331238144 INFO 2025-06-26 13:01:28,182 calibrate.py _nudge_pos():1806 [1] 306: 0.050 -0.0000060 0.0000499 30 0.10 -9.258 95.604 2007-08-23T23:56:25.330279168 INFO 2025-06-26 13:01:28,204 calibrate.py _nudge_pos():1806 [1] 308: 0.380 0.0000126 -0.0000233 14 0.04 43.263 -99.782 2007-08-23T23:56:29.130018816 INFO 2025-06-26 13:01:28,995 calibrate.py _nudge_pos():1806 [1] 383: 0.050 -0.0000662 0.0000640 5592 18.66 -0.526 0.635 2007-08-24T00:16:23.328210688 INFO 2025-06-26 13:01:29,846 calibrate.py _nudge_pos():1806 [1] 465: 0.060 -0.0000395 -0.0000136 7944 26.55 -0.220 -0.095 2007-08-24T00:44:17.323534080 INFO 2025-06-26 13:01:30,587 calibrate.py _nudge_pos():1806 [1] 535: 0.070 -0.0000302 -0.0000225 7556 25.25 -0.177 -0.165 2007-08-24T01:10:41.325022464 INFO 2025-06-26 13:01:31,427 calibrate.py _nudge_pos():1806 [1] 615: 0.070 0.0000012 -0.0000334 8565 28.58 0.006 -0.217 2007-08-24T01:40:35.322125312 INFO 2025-06-26 13:01:32,146 calibrate.py _nudge_pos():1806 [1] 684: 0.070 0.0000699 0.0000012 9726 32.46 0.319 0.007 2007-08-24T02:14:11.324019712 INFO 2025-06-26 13:01:32,939 calibrate.py _nudge_pos():1806 [1] 759: 0.070 0.0000943 0.0001102 7213 24.06 0.580 0.848 2007-08-24T02:39:29.330029312 INFO 2025-06-26 13:01:32,995 calibrate.py _nudge_pos():1806 [1] 764: 0.070 0.0000071 0.0000081 75 0.25 4.259 6.095 2007-08-24T02:39:48.328727808 INFO 2025-06-26 13:01:33,770 calibrate.py _nudge_pos():1806 [1] 835: 0.070 0.0001087 0.0000869 6230 20.80 0.774 0.774 2007-08-24T03:01:47.328370176 INFO 2025-06-26 13:01:34,426 calibrate.py _nudge_pos():1806 [1] 895: 0.070 0.0000882 0.0000158 5605 18.71 0.698 0.156 2007-08-24T03:21:29.327397632 INFO 2025-06-26 13:01:35,353 calibrate.py _nudge_pos():1806 [1] 979: 0.080 0.0001120 -0.0002057 4080 13.61 1.218 -2.801 2007-08-24T03:36:29.325743360 INFO 2025-06-26 13:01:35,461 calibrate.py _nudge_pos():1806 [1] 989: 0.080 -0.0000145 -0.0000154 55 0.18 -11.928 -15.831 2007-08-24T03:36:49.324373504 INFO 2025-06-26 13:01:36,186 calibrate.py _nudge_pos():1806 [1] 1056: 0.080 0.0000369 0.0000081 1999 6.66 0.820 0.226 2007-08-24T03:44:35.322450432 INFO 2025-06-26 13:01:36,980 calibrate.py _nudge_pos():1806 [1] 1130: 0.080 0.0009329 0.0014304 11620 38.78 3.563 6.835 2007-08-24T04:24:35.328038656 INFO 2025-06-26 13:01:37,003 calibrate.py _nudge_pos():1806 [1] 1132: 0.080 -0.0000200 0.0000031 130 0.43 -6.884 1.326 2007-08-24T04:25:02.326189312 INFO 2025-06-26 13:01:37,941 calibrate.py _nudge_pos():1806 [1] 1220: 0.090 0.0011170 0.0013111 9832 32.80 5.045 7.408 2007-08-24T04:59:17.325412096 INFO 2025-06-26 13:01:38,653 calibrate.py _nudge_pos():1806 [1] 1286: 0.090 0.0005040 0.0002493 2585 8.61 8.668 5.363 2007-08-24T05:08:59.325542400 INFO 2025-06-26 13:01:39,554 calibrate.py _nudge_pos():1806 [1] 1370: 0.090 0.0052403 -0.0016836 11062 36.91 21.036 -8.451 2007-08-24T05:47:17.328118272 INFO 2025-06-26 13:01:39,587 calibrate.py _nudge_pos():1806 [1] 1373: 0.090 0.0000086 0.0000064 75 0.25 5.191 4.842 2007-08-24T05:47:34.326953984 INFO 2025-06-26 13:01:40,257 calibrate.py _nudge_pos():1806 [1] 1435: 0.080 0.0048253 -0.0022777 11899 39.70 18.019 -10.632 2007-08-24T06:28:17.329596672 INFO 2025-06-26 13:01:40,977 calibrate.py _nudge_pos():1806 [1] 1503: 0.090 0.0028644 -0.0015896 7849 26.18 16.223 -11.251 2007-08-24T06:55:35.327386112 INFO 2025-06-26 13:01:41,732 calibrate.py _nudge_pos():1806 [1] 1571: 0.100 0.0023431 -0.0012158 9317 31.08 11.181 -7.248 2007-08-24T07:27:47.325035264 INFO 2025-06-26 13:01:42,570 calibrate.py _nudge_pos():1806 [1] 1647: 0.100 0.0028710 -0.0011689 11372 37.95 11.224 -5.708 2007-08-24T08:06:59.323912448 INFO 2025-06-26 13:01:42,647 calibrate.py _nudge_pos():1806 [1] 1654: 0.100 0.0000078 0.0000136 65 0.21 5.408 11.777 2007-08-24T08:07:18.322610944 INFO 2025-06-26 13:01:43,375 calibrate.py _nudge_pos():1806 [1] 1721: 0.100 -0.0000010 -0.0000417 25 0.08 -1.877 -96.512 2007-08-24T08:08:29.327746560 INFO 2025-06-26 13:01:43,408 calibrate.py _nudge_pos():1806 [1] 1724: 0.100 0.0045125 -0.0018307 12756 42.56 15.733 -7.970 2007-08-24T08:51:05.322649088 INFO 2025-06-26 13:01:44,409 calibrate.py _nudge_pos():1806 [1] 1816: 0.110 0.0028636 -0.0019254 14118 47.08 9.029 -7.578 2007-08-24T09:39:41.322889216 INFO 2025-06-26 13:01:44,485 calibrate.py _nudge_pos():1806 [1] 1823: 0.110 -0.0000144 0.0001151 35 0.11 -18.809 188.159 2007-08-24T09:39:54.321998848 INFO 2025-06-26 13:01:45,272 calibrate.py _nudge_pos():1806 [1] 1894: 0.110 0.0007261 -0.0007728 4675 15.61 6.905 -9.172 2007-08-24T09:56:41.323014400 INFO 2025-06-26 13:01:46,212 calibrate.py _nudge_pos():1806 [1] 1980: 0.100 0.0006148 0.0000671 2213 7.38 12.368 1.684 2007-08-24T10:05:29.326843648 INFO 2025-06-26 13:01:47,166 calibrate.py _nudge_pos():1806 [1] 2067: 0.100 0.0041390 0.0023546 13839 46.16 13.315 9.452 2007-08-24T10:53:05.331194112 INFO 2025-06-26 13:01:47,978 calibrate.py _nudge_pos():1806 [1] 2141: 0.110 0.0043819 0.0024643 11139 37.18 17.508 12.282 2007-08-24T11:31:29.323360000 INFO 2025-06-26 13:01:48,771 calibrate.py _nudge_pos():1806 [1] 2212: 0.110 0.0038384 0.0024782 10893 36.33 15.700 12.640 2007-08-24T12:08:59.329223936 INFO 2025-06-26 13:01:48,863 calibrate.py _nudge_pos():1806 [1] 2220: 0.100 0.0000099 -0.0000171 80 0.26 5.570 -12.030 2007-08-24T12:09:22.327648512 INFO 2025-06-26 13:01:49,466 calibrate.py _nudge_pos():1806 [1] 2275: 0.100 0.0036832 0.0023288 11088 37.01 14.791 11.658 2007-08-24T12:47:17.331800064 INFO 2025-06-26 13:01:50,183 calibrate.py _nudge_pos():1806 [1] 2340: 0.110 0.0036329 0.0024350 11278 37.63 14.355 11.991 2007-08-24T13:25:59.322732800 INFO 2025-06-26 13:01:50,953 calibrate.py _nudge_pos():1806 [1] 2410: 0.110 0.0015144 0.0004705 3193 10.65 21.151 8.190 2007-08-24T13:37:47.324231168 INFO 2025-06-26 13:01:51,011 calibrate.py _nudge_pos():1806 [1] 2415: 0.110 0.0000078 0.0000019 105 0.35 3.360 1.023 2007-08-24T13:38:12.322518784 INFO 2025-06-26 13:01:51,782 calibrate.py _nudge_pos():1806 [1] 2482: 0.110 0.0009605 0.0005995 3440 11.48 12.442 9.677 2007-08-24T13:50:47.330797312 INFO 2025-06-26 13:01:52,528 calibrate.py _nudge_pos():1806 [1] 2549: 0.110 -0.0003722 -0.0014029 9534 31.80 -1.740 -8.176 2007-08-24T14:23:41.325569280 INFO 2025-06-26 13:01:53,327 calibrate.py _nudge_pos():1806 [1] 2621: 0.110 -0.0002567 -0.0000380 11518 38.41 -0.993 -0.183 2007-08-24T15:03:17.322802432 INFO 2025-06-26 13:01:53,341 calibrate.py _nudge_pos():1806 [1] 2622: 0.110 0.0000345 -0.0000180 200 0.66 7.722 -5.025 2007-08-24T15:03:57.330061568 INFO 2025-06-26 13:01:54,161 calibrate.py _nudge_pos():1806 [1] 2695: 0.110 -0.0002646 -0.0000857 10138 33.83 -1.162 -0.470 2007-08-24T15:38:59.326065152 INFO 2025-06-26 13:01:54,295 calibrate.py _nudge_pos():1806 [1] 2707: 0.110 0.0000576 -0.0003318 60 0.20 43.515 -312.626 2007-08-24T15:39:22.324489472 INFO 2025-06-26 13:01:55,031 calibrate.py _nudge_pos():1806 [1] 2773: 0.110 -0.0002851 -0.0000649 9841 32.83 -1.290 -0.366 2007-08-24T16:13:17.325082368 INFO 2025-06-26 13:01:55,066 calibrate.py _nudge_pos():1806 [1] 2776: 0.120 0.0000029 -0.0000148 135 0.45 0.955 -6.130 2007-08-24T16:13:46.323095808 INFO 2025-06-26 13:01:55,803 calibrate.py _nudge_pos():1806 [1] 2842: 0.120 -0.0000191 -0.0004001 9865 32.93 -0.086 -2.251 2007-08-24T16:47:47.323277824 INFO 2025-06-26 13:01:55,927 calibrate.py _nudge_pos():1806 [1] 2853: 0.120 0.0000144 -0.0000411 35 0.11 18.862 -67.269 2007-08-24T16:48:04.322113280 INFO 2025-06-26 13:01:56,727 calibrate.py _nudge_pos():1806 [1] 2924: 0.110 -0.0001107 -0.0000777 10355 34.55 -0.476 -0.417 2007-08-24T17:23:47.325307648 INFO 2025-06-26 13:01:56,861 calibrate.py _nudge_pos():1862 [1] 2901: - - - 4 0.01 - - INFO 2025-06-26 13:01:56,862 calibrate.py _nudge_pos():1868 [1] Points in final series = 328515 WARNING 2025-06-26 13:01:57,398 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 9.09 Hz INFO 2025-06-26 13:02:30,646 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 8 of 262912 INFO 2025-06-26 13:02:32,831 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 1 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:02:52,124 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 32 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:02:54,164 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 32 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:02:54,168 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2007.235.00/ctd1.nc INFO 2025-06-26 13:02:54,170 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 13:02:54,170 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 13:02:54,170 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 13:03:09,191 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 24 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:03:11,147 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 24 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 13:03:11,151 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2007.235.00/ctd2.nc INFO 2025-06-26 13:03:11,153 calibrate.py _range_qc_combined_nc():898 [1] Setting 168 ctd2_salinity values to NaN INFO 2025-06-26 13:03:11,154 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 13:03:11,154 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 13:03:13,626 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 13:03:16,766 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 ... 3917367 3917368 3917369] INFO 2025-06-26 13:03:17,358 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -3 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 13:03:17,365 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 13:03:17,365 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2007.235.00 ERROR 2025-06-26 13:03:17,366 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2007.235.00 INFO 2025-06-26 13:03:17,421 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2007.235.00/dorado_2007.235.00_cal.nc INFO 2025-06-26 13:03:38,517 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 13:03:38,523 process.py align():251 [1] Alignment steps for 2007.235.00 INFO 2025-06-26 13:03:38,568 align.py process_cal():139 [1] Processing dorado_2007.235.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2007.235.00 INFO 2025-06-26 13:03:38,654 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:03:38,663 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 13:03:38,871 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:03:38,883 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 13:03:39,090 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:03:39,102 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 13:03:39,231 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 13:03:39,232 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 13:03:39,314 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 13:03:39,326 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 13:03:39,527 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.235.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:03:39,538 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:03:39,717 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.235.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:03:39,727 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:03:39,909 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.235.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:03:39,920 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:03:40,107 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.235.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:03:40,117 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:03:40,303 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.235.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:03:40,314 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:03:40,493 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.235.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:03:40,503 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:03:40,685 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.235.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:03:40,695 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:03:40,874 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.235.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:03:40,884 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:03:41,066 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.235.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:03:41,076 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:03:41,255 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.235.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:03:41,266 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:03:41,449 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.235.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:03:41,460 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:03:41,639 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.235.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:03:41,649 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:03:41,828 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.235.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:03:41,838 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:03:42,019 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.235.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:03:42,029 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:03:42,209 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.235.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:03:42,220 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:03:42,399 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.235.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:03:42,411 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:03:42,591 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.235.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:03:42,601 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:03:42,778 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.235.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:03:42,789 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:03:42,968 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.235.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:03:42,978 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:03:43,159 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.235.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 13:03:43,169 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 13:03:43,384 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.74 INFO 2025-06-26 13:03:43,521 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.74 INFO 2025-06-26 13:03:43,659 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.74 INFO 2025-06-26 13:03:43,800 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 13:03:43,944 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 1.02 INFO 2025-06-26 13:03:43,986 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2007.235.00/dorado_2007.235.00_align.nc INFO 2025-06-26 13:03:44,128 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 13:03:44,131 process.py resample():273 [1] Resampling steps for 2007.235.00 INFO 2025-06-26 13:03:44,131 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 13:03:44,164 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.235.00/dorado_2007.235.00_align.nc mission netCDF file INFO 2025-06-26 13:03:44,173 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.235.00/dorado_2007.235.00_align.nc mission netCDF file INFO 2025-06-26 13:03:44,176 resample.py get_mission_start_end():1145 [1] navigation: 2007-08-23T23:07:21.691932160 to 2007-08-24T17:23:59.124499200 (0 days 00:00:00 before mission_end) INFO 2025-06-26 13:03:44,179 resample.py get_mission_start_end():1145 [1] hs2 : 2007-08-23T23:06:53.513862400 to 2007-08-24T17:23:58.994508032 (0 days 00:00:00.129991168 before mission_end) INFO 2025-06-26 13:03:44,182 resample.py get_mission_start_end():1145 [1] ctd1 : 2007-08-23T23:07:24.601732608 to 2007-08-24T17:23:58.994508032 (0 days 00:00:00.129991168 before mission_end) INFO 2025-06-26 13:03:44,184 resample.py get_mission_start_end():1145 [1] ctd2 : 2007-08-23T23:07:16.772269312 to 2007-08-24T17:23:58.994508032 (0 days 00:00:00.129991168 before mission_end) INFO 2025-06-26 13:03:44,186 resample.py get_mission_start_end():1145 [1] isus : 2007-08-23T23:07:47.180186112 to 2007-08-24T17:23:59.124499200 (0 days 00:00:00 before mission_end) INFO 2025-06-26 13:03:44,188 resample.py get_mission_start_end():1145 [1] biolume : 2007-08-23T23:06:48.944141056 to 2007-08-24T17:23:57.704562176 (0 days 00:00:01.419937024 before mission_end) INFO 2025-06-26 13:03:44,189 resample.py get_mission_start_end():1145 [1] tailcone : 2007-08-23T23:06:51.054030848 to 2007-08-24T17:23:58.644532224 (0 days 00:00:00.479966976 before mission_end) INFO 2025-06-26 13:03:44,190 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.235.00/dorado_2007.235.00_align.nc mission netCDF file INFO 2025-06-26 13:03:44,191 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:44,864 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:44,973 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:45,080 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:45,187 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:45,280 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:45,371 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:45,461 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:45,552 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:45,637 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:45,723 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:45,807 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:45,890 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:45,975 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:46,059 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:46,143 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:46,226 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:46,314 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:46,406 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:46,500 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:46,588 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:46,676 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:46,762 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:46,796 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:46,825 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:46,853 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:46,888 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:46,922 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 13:03:47,381 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2007.235.00/dorado_2007.235.00_1S.nc INFO 2025-06-26 13:03:50,662 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 13:03:59,603 create_products.py gulper_odv():522 [1] Wrote 8 Gulper data lines to /data/auv_data/dorado/missionodvs/2007.235.00/dorado_2007.235.00_1S_Gulper.txt INFO 2025-06-26 13:03:59,603 process.py archive():337 [1] Archiving steps for 2007.235.00 INFO 2025-06-26 13:03:59,603 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2007.235.00/dorado_2007.235.00, BASE_PATH = /data/auv_data INFO 2025-06-26 13:03:59,605 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2007.235.00/dorado_2007.235.00 files to /Volumes/AUVCTD/surveys/2007/netcdf INFO 2025-06-26 13:03:59,606 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.235.00_1S.nc INFO 2025-06-26 13:03:59,650 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.235.00/dorado_2007.235.00_1S.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 13:03:59,651 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.235.00_cal.nc INFO 2025-06-26 13:03:59,881 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.235.00/dorado_2007.235.00_cal.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 13:03:59,882 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.235.00_align.nc INFO 2025-06-26 13:04:00,084 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.235.00/dorado_2007.235.00_align.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 13:04:00,146 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.235.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007235/2007.235.00 done. INFO 2025-06-26 13:04:00,203 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.235.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007235/2007.235.00 done. INFO 2025-06-26 13:04:00,208 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.235.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007235/2007.235.00 done. INFO 2025-06-26 13:04:00,251 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.235.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007235/2007.235.00 done. INFO 2025-06-26 13:04:00,443 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.235.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007235/2007.235.00 done. INFO 2025-06-26 13:04:00,453 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.235.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007235/2007.235.00 done. 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INFO 2025-06-26 13:04:00,718 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 13:04:00,719 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2007/odv/dorado_2007.235.00_1S_Gulper.txt INFO 2025-06-26 13:04:00,724 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2007.235.00/dorado_2007.235.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2007/odv done. INFO 2025-06-26 13:04:00,724 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.235.00/dorado_2007.235.00_processing.log /Volumes/AUVCTD/surveys/2007/netcdf