INFO 2025-06-26 12:46:14,603 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 12:46:14,603 process.py process_mission():434 [1] dorado_info[mission]["comment"] = BIOLUME mission - ctdToUse = ctd1 INFO 2025-06-26 12:46:14,604 process.py process_mission():449 [1] Processing BIOLUME mission 2007.149.02 by user docker_user on host eae60d30a712 INFO 2025-06-26 12:46:14,604 process.py download_process():165 [1] Download and processing steps for 2007.149.02 INFO 2025-06-26 12:46:14,604 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2007/2007149/2007.149.02 INFO 2025-06-26 12:46:14,604 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2007/2007149/2007.149.02 to /data/auv_data/dorado/missionlogs/2007.149.02 INFO 2025-06-26 12:46:20,584 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2007.149.02 INFO 2025-06-26 12:46:20,586 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.149.02/ctdDriver.log (24480851 bytes) INFO 2025-06-26 12:46:22,376 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.149.02/ctdDriver.log: [ 137 230 378 454 646 681 746 849 964 986 1004 1058 1321 1490 1530 1531 1585 1813 2035 2096 2692 2762 3186 3187 3343 3905 4172 4218 4743 4828 5013 5110 5250 6208 6285 6497 7273 7506 7646 7868 8026 9301 9919 10776 10811 11228 11443 13315 14129 14773 15049 16224 18565 20004 22906 23337 23506 23992 24031 24363 24402 27654 29983 31321 31567 32285 33352 34582 35014 36566 38002 39909 43058 44020 50269 54452 54856 54952 55129 56487 57100 64598 70628 74878 75471 75518 76629 79594 82580 84049 85027 85949 88910 92215 94122 94595 95812 96763 103907 104640 109583 110802 113281 114667 114720 116891 118125 122917 123195 123597 124091 124576 125230 127151 128479 136076 137024 139452 139576 143738 145295 146553 147062 150440 154557 155844 167525 167526 169657 170551 170569 177562 182101 183998 184548 189209 190708 194393 196060 197035 197422 199964 200021 200819 202407 204402 206037 207041 209194 210543 214323 214541 215988 217652 222037 224271 224760 225920 229529 229693 231981 234801 234937 234938 235845 237031 240006 240812 244397 246085 249154 251111 253197 254166 254235 254818 257004 258258 264538 267022 267419 269880 271250 274519] INFO 2025-06-26 12:46:22,451 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.149.02/ctdDriver2.log (24481725 bytes) INFO 2025-06-26 12:46:24,177 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.149.02/ctdDriver2.log: [ 4 138 224 233 313 381 457 649 685 852 968 989 1007 1108 1324 1530 1585 1813 1850 1933 2035 2097 2428 2690 2771 3103 3186 3542 3697 3906 4150 4173 4219 4744 4830 5111 5250 5600 6288 6500 7122 7278 7652 8032 9307 9330 9926 10782 10792 10815 11232 11445 13317 14129 14772 16221 20001 20967 21359 22906 23336 23506 23992 24031 24362 24363 24402 27652 29620 29980 31318 31447 31565 32789 33350 34580 35012 36563 39903 42086 43051 44015 47162 49765 50270 54453 54856 54952 55129 56488 57099 64023 64598 70629 70998 74880 74930 75471 75518 76627 79592 82576 84046 85024 85946 87093 88907 92213 94120 95810 96761 103907 109583 110802 113281 114720 116891 118125 119246 122915 123194 123595 124089 124574 125228 127149 136074 137022 139450 139574 143737 145295 146553 147062 150440 153662 154557 155844 161943 162090 166324 169609 169667 170561 170580 177573 182110 184007 184556 189217 190158 190717 194402 197042 197429 200827 202416 204412 206047 207052 209205 210553 214000 214335 214554 216002 217667 222052 223004 224285 224775 225935 229545 230993 234820 235858 237044 237835 240023 240829 244414 244543 249170 251127 252040 253213 253214 254183 254833 258273 260325 261668 264553 265652 267034 267431 274527] INFO 2025-06-26 12:46:24,254 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.149.02/gps.log (170060 bytes) INFO 2025-06-26 12:46:24,282 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.149.02/hydroscatlog.log (16702034 bytes) INFO 2025-06-26 12:46:26,248 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.149.02/hydroscatlog.log: [ 3 19 76 88 100 224 319 521 544 710 736 771 900 940 1077 1096 1110 1271 1414 1580 1676 1904 1941 2126 2188 2250 2328 2376 2429 2521 2783 2826 2854 2865 3280 3436 3509 4245 4268 4270 4314 4839 5207 5208 5438 6303 6306 6324 6385 6597 7220 7353 7354 7376 7609 7751 7973 8131 9429 9430 9484 10023 10471 10861 10891 10915 11336 11550 11551 12009 13423 13424 13850 14291 14881 16198 16299 16326 16332 18672 19226 19674 21080 23618 24105 24475 24514 25501 27187 27764 29735 29736 31433 31561 32399 33466 34695 37234 38113 38250 45503 47173 47275 49701 49879 50384 54566 54969 55017 55066 55243 56601 57381 63315 64139 64714 64857 70743 71111 72209 72210 75045 75587 75635 76746 79709 80938 81953 83455 84165 85145 85645 86066 87213 90167 90168 92334 94240 94944 96883 96921 97498 102591 103593 109708 110932 111141 112959 113413 114798 114850 116889 117215 118789 123054 123333 124229 124714 125018 127287 130406 130448 132212 132478 134775 137164 139714 143868 143875 143876 145443 146702 150588 150911 154694 154711 155998 160921 162206 164013 166356 166471 169705 169813 170075 170708 170727 175146 176326 177444 177720 178533 184154 184155 184707 186268 190865 190866 196476 197577 199699 200180 200978 202564 202565 204294 204563 206196 209355 212415 214700 216148 217715 217811 222193 222194 224428 224921 226079 229690 231479 232144 234963 237193 237985 239143 240175 240981 244563 244564 245937 247783 251276 252190 253363 254330 254981 257169 258421 259690 260474 261815 261816 264702 265801 267097 267188 267585 270995 271415 274259 274686 274695 278125] INFO 2025-06-26 12:46:26,292 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.149.02/navigation.log (82033726 bytes) INFO 2025-06-26 12:46:32,424 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.149.02/isuslog.log (1557877 bytes) INFO 2025-06-26 12:46:32,578 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.149.02/parosci.log (29280902 bytes) INFO 2025-06-26 12:46:35,139 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.149.02/tailCone.log (3371659 bytes) INFO 2025-06-26 12:46:35,554 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.149.02/biolume.log (18944940 bytes) INFO 2025-06-26 12:46:37,384 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 12:46:38,347 logs2netcdfs.py download_process_logs():807 [1] Time to process: 17.76 seconds WARNING 2025-06-26 12:46:38,348 process.py download_process():196 [1] No lopc.bin file for 2007.149.02 INFO 2025-06-26 12:46:38,348 process.py calibrate():227 [1] Calibration steps for 2007.149.02 INFO 2025-06-26 12:46:38,877 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 12:46:38,879 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 12:46:39,780 calibrate.py _nudge_pos():1806 [1] 113: 0.080 -0.0002669 -0.0001623 2368 8.01 -4.942 -3.752 2007-05-29T22:53:23.790344704 INFO 2025-06-26 12:46:40,323 calibrate.py _nudge_pos():1806 [1] 166: 0.070 0.0014826 -0.0000546 10221 34.23 6.429 -0.296 2007-05-29T23:28:29.796073472 INFO 2025-06-26 12:46:40,988 calibrate.py _nudge_pos():1806 [1] 231: 0.070 0.0037557 0.0002337 10665 35.63 15.650 1.216 2007-05-30T00:05:11.795226112 INFO 2025-06-26 12:46:41,576 calibrate.py _nudge_pos():1806 [1] 288: 0.070 0.0036100 0.0000701 12122 40.46 13.249 0.321 2007-05-30T00:46:35.795060480 INFO 2025-06-26 12:46:42,243 calibrate.py _nudge_pos():1806 [1] 353: 0.080 0.0036017 0.0000017 11515 38.43 13.922 0.008 2007-05-30T01:26:05.792704512 INFO 2025-06-26 12:46:42,287 calibrate.py _nudge_pos():1806 [1] 357: 0.070 -0.0000038 -0.0000097 110 0.36 -1.540 -4.937 2007-05-30T01:26:30.790992128 INFO 2025-06-26 12:46:42,965 calibrate.py _nudge_pos():1806 [1] 422: 0.070 0.0036604 0.0001224 10887 36.31 14.978 0.625 2007-05-30T02:03:53.797335552 INFO 2025-06-26 12:46:43,052 calibrate.py _nudge_pos():1806 [1] 430: 0.070 0.0000016 -0.0000178 55 0.18 1.287 -18.325 2007-05-30T02:04:11.796102400 INFO 2025-06-26 12:46:43,687 calibrate.py _nudge_pos():1806 [1] 490: 0.070 0.0019868 -0.0006842 10577 35.31 8.363 -3.590 2007-05-30T02:40:29.796899328 INFO 2025-06-26 12:46:43,731 calibrate.py _nudge_pos():1806 [1] 494: 0.070 0.0000428 0.0000196 140 0.46 13.725 7.830 2007-05-30T02:41:00.794775808 INFO 2025-06-26 12:46:44,479 calibrate.py _nudge_pos():1806 [1] 565: 0.070 0.0010599 -0.0012568 11486 38.31 4.113 -6.079 2007-05-30T03:20:29.792488448 INFO 2025-06-26 12:46:44,501 calibrate.py _nudge_pos():1806 [1] 567: 0.080 0.0000452 -0.0000232 120 0.40 16.929 -10.859 2007-05-30T03:20:54.790775808 INFO 2025-06-26 12:46:45,111 calibrate.py _nudge_pos():1806 [1] 626: 0.080 0.0010736 -0.0015053 9927 33.11 4.822 -8.424 2007-05-30T03:54:59.790683648 INFO 2025-06-26 12:46:45,747 calibrate.py _nudge_pos():1806 [1] 687: 0.080 0.0002338 0.0009552 7733 25.80 1.348 6.861 2007-05-30T04:21:47.790528256 INFO 2025-06-26 12:46:45,758 calibrate.py _nudge_pos():1806 [1] 688: 0.080 0.0000179 -0.0000254 105 0.35 7.680 -13.561 2007-05-30T04:22:08.789089792 INFO 2025-06-26 12:46:46,430 calibrate.py _nudge_pos():1806 [1] 752: 0.060 0.0013561 0.0021839 12170 40.60 4.965 9.968 2007-05-30T05:03:47.797895936 INFO 2025-06-26 12:46:46,535 calibrate.py _nudge_pos():1806 [1] 762: 0.070 0.0000039 -0.0000419 80 0.26 2.184 -29.493 2007-05-30T05:04:12.796183296 INFO 2025-06-26 12:46:47,072 calibrate.py _nudge_pos():1806 [1] 813: 0.070 0.0020919 0.0033024 12036 40.15 7.742 15.242 2007-05-30T05:45:11.797730304 INFO 2025-06-26 12:46:47,617 calibrate.py _nudge_pos():1806 [1] 864: 0.070 0.0001795 0.0015573 11772 39.26 0.679 7.350 2007-05-30T06:25:17.792908288 INFO 2025-06-26 12:46:48,211 calibrate.py _nudge_pos():1806 [1] 919: 0.060 -0.0007601 0.0010758 10305 34.40 -3.282 5.796 2007-05-30T07:00:35.797815040 INFO 2025-06-26 12:46:48,774 calibrate.py _nudge_pos():1806 [1] 972: 0.070 -0.0001552 0.0008249 6997 23.33 -0.988 6.552 2007-05-30T07:24:47.798345984 INFO 2025-06-26 12:46:48,860 calibrate.py _nudge_pos():1806 [1] 980: 0.070 -0.0000075 -0.0000332 110 0.36 -3.070 -16.950 2007-05-30T07:25:16.796359424 INFO 2025-06-26 12:46:49,465 calibrate.py _nudge_pos():1806 [1] 1037: 0.070 0.0000003 0.0001681 3982 13.28 0.003 2.346 2007-05-30T07:39:29.797925120 INFO 2025-06-26 12:46:50,072 calibrate.py _nudge_pos():1806 [1] 1094: 0.070 0.0038721 -0.0001361 10479 34.96 16.437 -0.721 2007-05-30T08:15:23.790366464 INFO 2025-06-26 12:46:50,634 calibrate.py _nudge_pos():1806 [1] 1147: 0.070 0.0014087 0.0006278 6996 23.33 8.960 4.987 2007-05-30T08:39:35.790897664 INFO 2025-06-26 12:46:51,168 calibrate.py _nudge_pos():1806 [1] 1197: 0.060 0.0008382 0.0007876 5866 19.58 6.351 7.454 2007-05-30T08:59:59.797047296 INFO 2025-06-26 12:46:51,264 calibrate.py _nudge_pos():1806 [1] 1206: 0.070 0.0000351 -0.0000291 105 0.35 15.019 -15.531 2007-05-30T09:00:28.795060992 INFO 2025-06-26 12:46:51,726 calibrate.py _nudge_pos():1806 [1] 1249: 0.070 0.0009001 0.0004468 4563 15.21 8.776 5.442 2007-05-30T09:16:23.789639168 INFO 2025-06-26 12:46:51,800 calibrate.py _nudge_pos():1806 [1] 1256: 0.060 0.0000255 -0.0000040 115 0.38 9.946 -1.943 2007-05-30T09:16:52.797651968 INFO 2025-06-26 12:46:52,348 calibrate.py _nudge_pos():1806 [1] 1307: 0.060 0.0014461 0.0017196 7130 23.78 9.018 13.400 2007-05-30T09:41:29.796470784 INFO 2025-06-26 12:46:52,877 calibrate.py _nudge_pos():1806 [1] 1356: 0.060 0.0009064 0.0012820 7675 25.60 5.250 9.281 2007-05-30T10:07:53.797959424 INFO 2025-06-26 12:46:53,421 calibrate.py _nudge_pos():1806 [1] 1406: 0.060 0.0001310 0.0005448 6621 22.08 0.880 4.572 2007-05-30T10:30:47.793833984 INFO 2025-06-26 12:46:53,532 calibrate.py _nudge_pos():1806 [1] 1416: 0.060 -0.0000246 0.0000110 74 0.25 -14.802 8.255 2007-05-30T10:31:11.792189952 INFO 2025-06-26 12:46:54,055 calibrate.py _nudge_pos():1806 [1] 1463: 0.060 -0.0001120 0.0003881 11126 37.13 -0.447 1.937 2007-05-30T11:09:05.796410112 INFO 2025-06-26 12:46:54,155 calibrate.py _nudge_pos():1806 [1] 1472: 0.060 -0.0000260 -0.0000166 95 0.31 -12.283 -9.802 2007-05-30T11:09:32.794560768 INFO 2025-06-26 12:46:54,709 calibrate.py _nudge_pos():1806 [1] 1522: 0.070 0.0000021 0.0001055 8167 27.23 0.011 0.718 2007-05-30T11:37:35.789267456 INFO 2025-06-26 12:46:54,744 calibrate.py _nudge_pos():1806 [1] 1525: 0.060 -0.0000076 0.0000085 145 0.48 -2.349 3.284 2007-05-30T11:38:06.797143552 INFO 2025-06-26 12:46:55,378 calibrate.py _nudge_pos():1806 [1] 1583: 0.060 0.0000790 0.0000115 2529 8.43 1.388 0.254 2007-05-30T11:47:29.798575104 INFO 2025-06-26 12:46:55,963 calibrate.py _nudge_pos():1806 [1] 1636: 0.070 -0.0008995 0.0007342 10265 34.23 -3.892 3.974 2007-05-30T12:22:35.794304512 INFO 2025-06-26 12:46:56,529 calibrate.py _nudge_pos():1806 [1] 1688: 0.070 -0.0002987 0.0001898 7207 24.05 -1.839 1.463 2007-05-30T12:47:29.791958784 INFO 2025-06-26 12:46:57,137 calibrate.py _nudge_pos():1806 [1] 1742: 0.070 -0.0001021 0.0000431 2402 8.01 -1.888 0.996 2007-05-30T12:56:23.795376896 INFO 2025-06-26 12:46:57,818 calibrate.py _nudge_pos():1806 [1] 1799: 0.070 0.0001552 -0.0001357 7247 24.16 0.951 -1.041 2007-05-30T13:21:29.792209152 INFO 2025-06-26 12:46:58,398 calibrate.py _nudge_pos():1806 [1] 1852: 0.060 0.0001535 0.0001371 5917 19.73 1.152 1.287 2007-05-30T13:42:05.797536768 INFO 2025-06-26 12:46:58,959 calibrate.py _nudge_pos():1806 [1] 1902: 0.070 0.0009557 0.0004620 7252 24.18 5.853 3.541 2007-05-30T14:07:05.794779904 INFO 2025-06-26 12:46:59,580 calibrate.py _nudge_pos():1806 [1] 1959: 0.060 0.0013915 0.0004395 8325 27.76 7.424 2.933 2007-05-30T14:35:47.796814848 INFO 2025-06-26 12:46:59,604 calibrate.py _nudge_pos():1806 [1] 1961: 0.060 0.0000007 0.0000015 130 0.43 0.249 0.627 2007-05-30T14:36:14.794965504 INFO 2025-06-26 12:47:00,260 calibrate.py _nudge_pos():1806 [1] 2019: 0.070 0.0024351 0.0007003 11988 40.00 9.020 3.244 2007-05-30T15:17:11.796649216 INFO 2025-06-26 12:47:01,013 calibrate.py _nudge_pos():1806 [1] 2085: 0.070 0.0027966 0.0007343 11516 38.41 10.788 3.542 2007-05-30T15:56:41.794293248 INFO 2025-06-26 12:47:01,689 calibrate.py _nudge_pos():1806 [1] 2146: 0.070 0.0026173 0.0006754 10222 34.10 11.378 3.671 2007-05-30T16:31:47.790022656 INFO 2025-06-26 12:47:02,324 calibrate.py _nudge_pos():1806 [1] 2202: 0.070 0.0029699 0.0004971 10400 34.68 12.697 2.656 2007-05-30T17:07:23.793696512 INFO 2025-06-26 12:47:03,046 calibrate.py _nudge_pos():1806 [1] 2265: 0.070 0.0024328 0.0000334 7722 25.76 14.003 0.240 2007-05-30T17:34:11.793540864 INFO 2025-06-26 12:47:03,679 calibrate.py _nudge_pos():1806 [1] 2322: 0.070 0.0028690 -0.0001111 8535 28.46 14.950 -0.723 2007-05-30T18:03:35.792698624 INFO 2025-06-26 12:47:03,987 calibrate.py _nudge_pos():1862 [1] 2317: - - - 1 0.00 - - INFO 2025-06-26 12:47:03,988 calibrate.py _nudge_pos():1868 [1] Points in final series = 347591 WARNING 2025-06-26 12:47:04,460 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 9.09 Hz INFO 2025-06-26 12:47:41,306 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 12:48:01,197 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 12:48:03,357 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 12:48:03,361 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2007.149.02/ctd1.nc INFO 2025-06-26 12:48:03,362 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 12:48:03,363 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 12:48:03,363 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 12:48:18,555 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 12:48:20,623 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 12:48:20,627 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2007.149.02/ctd2.nc INFO 2025-06-26 12:48:20,629 calibrate.py _range_qc_combined_nc():898 [1] Setting 123 ctd2_salinity values to NaN INFO 2025-06-26 12:48:20,629 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 12:48:20,630 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 12:48:20,724 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 12:48:23,919 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 ... 4175066 4175067 4175068] INFO 2025-06-26 12:48:24,545 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -3 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 12:48:24,552 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 12:48:24,553 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2007.149.02 ERROR 2025-06-26 12:48:24,553 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2007.149.02 INFO 2025-06-26 12:48:24,609 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2007.149.02/dorado_2007.149.02_cal.nc INFO 2025-06-26 12:48:46,121 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 12:48:46,126 process.py align():251 [1] Alignment steps for 2007.149.02 INFO 2025-06-26 12:48:46,166 align.py process_cal():139 [1] Processing dorado_2007.149.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2007.149.02 INFO 2025-06-26 12:48:46,254 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 12:48:46,263 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 12:48:46,503 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 12:48:46,519 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 12:48:46,731 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 12:48:46,743 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 12:48:46,878 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 12:48:46,878 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 12:48:46,970 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 12:48:46,984 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 12:48:47,194 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.149.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 12:48:47,205 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:48:47,388 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.149.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 12:48:47,398 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:48:47,583 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.149.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 12:48:47,593 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:48:47,776 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.149.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 12:48:47,787 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:48:47,973 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.149.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 12:48:47,984 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:48:48,167 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.149.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 12:48:48,177 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:48:48,359 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.149.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 12:48:48,369 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:48:48,554 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.149.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 12:48:48,564 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:48:48,748 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.149.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 12:48:48,758 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:48:48,944 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.149.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 12:48:48,956 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:48:49,143 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.149.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 12:48:49,153 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:48:49,337 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.149.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 12:48:49,347 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:48:49,532 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.149.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 12:48:49,542 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:48:49,729 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.149.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 12:48:49,739 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:48:49,925 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.149.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 12:48:49,935 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:48:50,121 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.149.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 12:48:50,134 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:48:50,324 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.149.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 12:48:50,334 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:48:50,521 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.149.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 12:48:50,532 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:48:50,716 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.149.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 12:48:50,726 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:48:50,909 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.149.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 12:48:50,919 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:48:51,140 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.70 INFO 2025-06-26 12:48:51,277 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.70 INFO 2025-06-26 12:48:51,415 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.70 INFO 2025-06-26 12:48:51,559 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 12:48:51,706 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 1.01 INFO 2025-06-26 12:48:51,746 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2007.149.02/dorado_2007.149.02_align.nc INFO 2025-06-26 12:48:51,890 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 12:48:51,892 process.py resample():273 [1] Resampling steps for 2007.149.02 INFO 2025-06-26 12:48:51,893 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 12:48:51,925 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.149.02/dorado_2007.149.02_align.nc mission netCDF file INFO 2025-06-26 12:48:51,934 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.149.02/dorado_2007.149.02_align.nc mission netCDF file INFO 2025-06-26 12:48:51,936 resample.py get_mission_start_end():1145 [1] navigation: 2007-05-29T22:44:03.908699392 to 2007-05-30T18:04:03.030832640 (0 days 00:00:00.009999360 before mission_end) INFO 2025-06-26 12:48:51,939 resample.py get_mission_start_end():1145 [1] hs2 : 2007-05-29T22:43:39.950340608 to 2007-05-30T18:04:03.040832000 (0 days 00:00:00 before mission_end) INFO 2025-06-26 12:48:51,941 resample.py get_mission_start_end():1145 [1] ctd1 : 2007-05-29T22:44:00.058962944 to 2007-05-30T18:04:03.040832000 (0 days 00:00:00 before mission_end) INFO 2025-06-26 12:48:51,944 resample.py get_mission_start_end():1145 [1] ctd2 : 2007-05-29T22:44:00.378941184 to 2007-05-30T18:04:03.040832000 (0 days 00:00:00 before mission_end) INFO 2025-06-26 12:48:51,946 resample.py get_mission_start_end():1145 [1] isus : 2007-05-29T22:44:45.145874176 to 2007-05-30T18:04:02.000903424 (0 days 00:00:01.039928576 before mission_end) INFO 2025-06-26 12:48:51,948 resample.py get_mission_start_end():1145 [1] biolume : 2007-05-29T22:43:31.010918656 to 2007-05-30T18:04:01.740887040 (0 days 00:00:01.299944960 before mission_end) INFO 2025-06-26 12:48:51,949 resample.py get_mission_start_end():1145 [1] tailcone : 2007-05-29T22:43:35.210665216 to 2007-05-30T18:04:02.710854656 (0 days 00:00:00.329977344 before mission_end) INFO 2025-06-26 12:48:51,950 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.149.02/dorado_2007.149.02_align.nc mission netCDF file INFO 2025-06-26 12:48:51,951 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:52,652 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:52,766 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:52,878 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:52,988 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:53,083 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:53,176 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:53,268 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:53,359 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:53,445 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:53,532 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:53,618 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:53,705 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:53,793 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:53,880 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:53,967 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:54,054 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:54,144 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:54,234 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:54,329 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:54,416 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:54,504 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:54,593 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:54,625 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:54,654 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:54,680 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:54,713 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:54,748 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 12:48:55,244 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2007.149.02/dorado_2007.149.02_1S.nc INFO 2025-06-26 12:48:57,910 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 12:49:07,460 create_products.py gulper_odv():522 [1] Wrote 9 Gulper data lines to /data/auv_data/dorado/missionodvs/2007.149.02/dorado_2007.149.02_1S_Gulper.txt INFO 2025-06-26 12:49:07,460 process.py archive():337 [1] Archiving steps for 2007.149.02 INFO 2025-06-26 12:49:07,460 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2007.149.02/dorado_2007.149.02, BASE_PATH = /data/auv_data INFO 2025-06-26 12:49:07,462 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2007.149.02/dorado_2007.149.02 files to /Volumes/AUVCTD/surveys/2007/netcdf INFO 2025-06-26 12:49:07,463 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.149.02_1S.nc INFO 2025-06-26 12:49:07,511 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.149.02/dorado_2007.149.02_1S.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 12:49:07,512 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.149.02_cal.nc INFO 2025-06-26 12:49:07,749 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.149.02/dorado_2007.149.02_cal.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 12:49:07,750 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.149.02_align.nc INFO 2025-06-26 12:49:07,967 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.149.02/dorado_2007.149.02_align.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 12:49:08,036 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.149.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007149/2007.149.02 done. INFO 2025-06-26 12:49:08,100 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.149.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007149/2007.149.02 done. INFO 2025-06-26 12:49:08,105 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.149.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007149/2007.149.02 done. INFO 2025-06-26 12:49:08,148 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.149.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007149/2007.149.02 done. INFO 2025-06-26 12:49:08,339 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.149.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007149/2007.149.02 done. INFO 2025-06-26 12:49:08,348 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.149.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007149/2007.149.02 done. INFO 2025-06-26 12:49:08,433 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.149.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007149/2007.149.02 done. INFO 2025-06-26 12:49:08,449 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.149.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007149/2007.149.02 done. INFO 2025-06-26 12:49:08,624 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.149.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007149/2007.149.02 done. INFO 2025-06-26 12:49:08,624 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 12:49:08,625 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2007/odv/dorado_2007.149.02_1S_Gulper.txt INFO 2025-06-26 12:49:08,630 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2007.149.02/dorado_2007.149.02_1S_Gulper.txt /Volumes/AUVCTD/surveys/2007/odv done. INFO 2025-06-26 12:49:08,630 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.149.02/dorado_2007.149.02_processing.log /Volumes/AUVCTD/surveys/2007/netcdf