INFO 2025-06-26 12:32:22,594 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 12:32:22,594 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Short survey at M1 - ctdToUse = ctd1 INFO 2025-06-26 12:32:22,595 process.py process_mission():449 [1] Processing AUVCTD mission 2007.085.01 by user docker_user on host eae60d30a712 INFO 2025-06-26 12:32:22,595 process.py download_process():165 [1] Download and processing steps for 2007.085.01 INFO 2025-06-26 12:32:22,595 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2007/2007085/2007.085.01 INFO 2025-06-26 12:32:22,595 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2007/2007085/2007.085.01 to /data/auv_data/dorado/missionlogs/2007.085.01 INFO 2025-06-26 12:32:23,993 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2007.085.01 INFO 2025-06-26 12:32:23,993 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.085.01/ctdDriver.log (2328435 bytes) INFO 2025-06-26 12:32:24,160 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.085.01/ctdDriver.log: [ 3 18 2247 2367 4780 5047 12260 12419 15418] INFO 2025-06-26 12:32:24,168 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.085.01/ctdDriver2.log (2327901 bytes) INFO 2025-06-26 12:32:24,339 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.085.01/ctdDriver2.log: [ 750 4776 15406 22819] INFO 2025-06-26 12:32:24,347 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.085.01/gps.log (30596 bytes) INFO 2025-06-26 12:32:24,358 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.085.01/hydroscatlog.log (1599794 bytes) INFO 2025-06-26 12:32:24,559 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.085.01/hydroscatlog.log: [ 5 37 89 304 325 625 717 743 849 1024 1135 1539 1541 1874 1945 2188 2248 2368 2490 2491 2760 3161 3280 3471 3479 3497 3645 3740 4576 4919 5187 5444 5608 6058 7325 7376 7605 7815 9018 10371 11063 11196 11423 11711 11869 12588 12623 13459 15593 17852 18797 19277 20580 24575 25068 25526 26097 26334] INFO 2025-06-26 12:32:24,563 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.085.01/navigation.log (7806062 bytes) INFO 2025-06-26 12:32:25,158 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.085.01/isuslog.log (150453 bytes) INFO 2025-06-26 12:32:25,178 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.085.01/isuslog.log: [1 2 3 4 5 7 8] INFO 2025-06-26 12:32:25,179 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.085.01/parosci.log (3399782 bytes) INFO 2025-06-26 12:32:25,485 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2007.085.01/parosci.log: [ 16 17 19 69 74 75 78 79 152 288 289 293 295 298 299 332 333 334 372 882 883 884 909 911 1310 1311 1382 1383 1384 1448 1449 1450 1701 1702 1703 1945 2011 2047 2048 2049 2284 2285 2286 2294 2295 2296 2401 2432 2434 2435 2747 2748 2853 2854 2913 3040 3042 3043 3441 4112 4265 4270 4339 4441 4442 4977 4978 4979 4998 5179 5183 5184 5827 5985 5987 5988 6267 6268 6624 8396 8710 8835 8836 8922 8923 8924 8925 9232 9234 9235 12138 12139 12939 12940 13051 13308 13764 13765 13840 13841 13842 14131 14132 14885 14886 16083 16084 16085 16086 18311 18313 19893 19894 19896 19897 20048 20197 20198 20356 20479 20480 20752 20753 20755 27557 27558 27559 27729 29008 29009 29011 29399 29750 29752 29753 30357 31120 31121 31123 31541 31542 32045 33026 33531 33532 33533 33540 33541 36851 36852 36854 43320 43799 43800 44089 44090 44509 44510 44512 47438 47439 47440 47986 47987 49955 51230 51231 51232 51233 51267 51269 61184 61185 62242 62243 62244 65311 65312 65313 65396 66624 66625 67844 67845 67846 69363 69364 69989 69990] INFO 2025-06-26 12:32:25,496 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.085.01/tailCone.log (1588459 bytes) INFO 2025-06-26 12:32:25,704 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2007.085.01/biolume.log (1818188 bytes) INFO 2025-06-26 12:32:25,876 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 12:32:25,983 logs2netcdfs.py download_process_logs():807 [1] Time to process: 1.99 seconds WARNING 2025-06-26 12:32:25,983 process.py download_process():196 [1] No lopc.bin file for 2007.085.01 INFO 2025-06-26 12:32:25,983 process.py calibrate():227 [1] Calibration steps for 2007.085.01 INFO 2025-06-26 12:32:26,088 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 12:32:26,090 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 12:32:27,843 calibrate.py _nudge_pos():1806 [1] 215: 0.190 -0.0005684 0.0007273 3398 11.45 -7.372 11.774 2007-03-26T20:25:23.516653056 INFO 2025-06-26 12:32:28,386 calibrate.py _nudge_pos():1806 [1] 272: 0.190 0.0001709 0.0024704 10870 36.36 0.698 12.589 2007-03-26T21:02:41.523339264 INFO 2025-06-26 12:32:28,958 calibrate.py _nudge_pos():1806 [1] 334: 0.190 0.0000038 0.0017141 12676 42.31 0.013 7.506 2007-03-26T21:46:01.525226752 INFO 2025-06-26 12:32:29,583 calibrate.py _nudge_pos():1806 [1] 401: 0.190 0.0002806 0.0001173 4273 14.26 2.920 1.524 2007-03-26T22:01:23.522065664 INFO 2025-06-26 12:32:29,693 calibrate.py _nudge_pos():1862 [1] 379: - - - 4 0.01 - - INFO 2025-06-26 12:32:29,693 calibrate.py _nudge_pos():1868 [1] Points in final series = 33046 WARNING 2025-06-26 12:32:30,844 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 12:32:34,282 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 1 of 26590 INFO 2025-06-26 12:32:34,485 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 6 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 12:32:36,381 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 12:32:36,580 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 12:32:36,582 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2007.085.01/ctd1.nc INFO 2025-06-26 12:32:36,583 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd1_salinity values to NaN INFO 2025-06-26 12:32:36,584 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 12:32:36,584 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 12:32:38,045 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 12:32:38,250 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 12:32:38,252 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2007.085.01/ctd2.nc WARNING 2025-06-26 12:32:38,254 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (26442) ctd2_salinity values found outside of range. This may indicate a problem with the ctd2 data. INFO 2025-06-26 12:32:38,254 calibrate.py _range_qc_combined_nc():898 [1] Setting 26442 ctd2_salinity values to NaN INFO 2025-06-26 12:32:38,255 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 12:32:38,255 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 12:32:38,487 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 12:32:38,770 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 ... 395764 395765 395766] INFO 2025-06-26 12:32:38,831 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -2 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 12:32:38,836 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 12:32:38,836 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2007.085.01 ERROR 2025-06-26 12:32:38,836 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2007.085.01 INFO 2025-06-26 12:32:38,864 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2007.085.01/dorado_2007.085.01_cal.nc INFO 2025-06-26 12:32:40,950 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 12:32:40,954 process.py align():251 [1] Alignment steps for 2007.085.01 INFO 2025-06-26 12:32:40,980 align.py process_cal():139 [1] Processing dorado_2007.085.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2007.085.01 INFO 2025-06-26 12:32:40,992 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 12:32:40,995 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 12:32:41,024 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 12:32:41,027 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 12:32:41,055 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 12:32:41,058 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 12:32:41,074 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 12:32:41,074 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 12:32:41,085 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 12:32:41,088 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 12:32:41,115 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.085.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 12:32:41,117 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:32:41,143 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.085.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 12:32:41,146 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:32:41,172 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2007.085.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 12:32:41,175 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 12:32:41,202 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.085.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:32:41,205 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 12:32:41,231 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.085.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:32:41,234 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 12:32:41,259 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.085.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:32:41,262 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 12:32:41,287 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.085.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:32:41,290 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 12:32:41,315 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.085.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:32:41,317 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 12:32:41,343 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.085.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:32:41,346 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 12:32:41,371 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.085.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:32:41,374 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 12:32:41,399 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.085.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:32:41,402 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 12:32:41,428 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.085.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:32:41,431 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 12:32:41,457 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2007.085.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:32:41,459 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 12:32:41,485 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.085.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:32:41,488 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 12:32:41,513 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.085.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:32:41,515 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 12:32:41,541 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.085.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:32:41,544 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 12:32:41,570 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.085.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:32:41,572 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 12:32:41,598 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.085.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:32:41,601 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 12:32:41,627 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.085.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:32:41,629 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 12:32:41,655 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2007.085.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:32:41,657 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 12:32:41,690 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.71 INFO 2025-06-26 12:32:41,715 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.71 INFO 2025-06-26 12:32:41,740 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.71 INFO 2025-06-26 12:32:41,767 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 12:32:41,795 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.96 INFO 2025-06-26 12:32:41,818 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2007.085.01/dorado_2007.085.01_align.nc INFO 2025-06-26 12:32:41,873 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 12:32:41,875 process.py resample():273 [1] Resampling steps for 2007.085.01 INFO 2025-06-26 12:32:41,876 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 12:32:41,969 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.085.01/dorado_2007.085.01_align.nc mission netCDF file INFO 2025-06-26 12:32:41,974 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.085.01/dorado_2007.085.01_align.nc mission netCDF file INFO 2025-06-26 12:32:41,976 resample.py get_mission_start_end():1145 [1] navigation: 2007-03-26T20:10:57.056009728 to 2007-03-26T22:01:35.521243904 (0 days 00:00:00.179987456 before mission_end) INFO 2025-06-26 12:32:41,978 resample.py get_mission_start_end():1145 [1] hs2 : 2007-03-26T20:10:31.037792256 to 2007-03-26T22:01:35.491245824 (0 days 00:00:00.209985536 before mission_end) INFO 2025-06-26 12:32:41,979 resample.py get_mission_start_end():1145 [1] ctd1 : 2007-03-26T20:10:52.336333056 to 2007-03-26T22:01:35.691232000 (0 days 00:00:00.009999360 before mission_end) INFO 2025-06-26 12:32:41,981 resample.py get_mission_start_end():1145 [1] ctd2 : 2007-03-26T20:10:52.286336512 to 2007-03-26T22:01:35.621236736 (0 days 00:00:00.079994624 before mission_end) INFO 2025-06-26 12:32:41,983 resample.py get_mission_start_end():1145 [1] isus : 2007-03-26T20:11:23.994164480 to 2007-03-26T22:01:34.021346560 (0 days 00:00:01.679884800 before mission_end) INFO 2025-06-26 12:32:41,984 resample.py get_mission_start_end():1145 [1] biolume : 2007-03-26T20:10:23.088302336 to 2007-03-26T22:01:34.781260288 (0 days 00:00:00.919971072 before mission_end) INFO 2025-06-26 12:32:41,985 resample.py get_mission_start_end():1145 [1] tailcone : 2007-03-26T20:10:24.998205952 to 2007-03-26T22:01:35.701231360 (0 days 00:00:00 before mission_end) INFO 2025-06-26 12:32:41,986 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2007.085.01/dorado_2007.085.01_align.nc mission netCDF file INFO 2025-06-26 12:32:41,986 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,080 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,097 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,114 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,131 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,148 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,165 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,181 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,196 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,210 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,224 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,238 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,252 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,266 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,280 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,294 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,308 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,324 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,339 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,403 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,419 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,434 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,449 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,459 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,469 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,479 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,489 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,508 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 12:32:42,639 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2007.085.01/dorado_2007.085.01_1S.nc INFO 2025-06-26 12:32:43,483 create_products.py gulper_odv():401 [1] No gulper times found for 2007.085.01 INFO 2025-06-26 12:32:43,484 process.py archive():337 [1] Archiving steps for 2007.085.01 INFO 2025-06-26 12:32:43,484 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2007.085.01/dorado_2007.085.01, BASE_PATH = /data/auv_data INFO 2025-06-26 12:32:43,484 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2007.085.01/dorado_2007.085.01 files to /Volumes/AUVCTD/surveys/2007/netcdf INFO 2025-06-26 12:32:43,486 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.085.01_1S.nc INFO 2025-06-26 12:32:43,498 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.085.01/dorado_2007.085.01_1S.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 12:32:43,499 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.085.01_cal.nc INFO 2025-06-26 12:32:43,533 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.085.01/dorado_2007.085.01_cal.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 12:32:43,534 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2007/netcdf/dorado_2007.085.01_align.nc INFO 2025-06-26 12:32:43,567 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.085.01/dorado_2007.085.01_align.nc /Volumes/AUVCTD/surveys/2007/netcdf done. INFO 2025-06-26 12:32:43,580 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.085.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007085/2007.085.01 done. INFO 2025-06-26 12:32:43,592 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.085.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007085/2007.085.01 done. INFO 2025-06-26 12:32:43,597 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.085.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007085/2007.085.01 done. INFO 2025-06-26 12:32:43,607 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.085.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007085/2007.085.01 done. INFO 2025-06-26 12:32:43,631 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.085.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007085/2007.085.01 done. INFO 2025-06-26 12:32:43,637 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.085.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007085/2007.085.01 done. INFO 2025-06-26 12:32:43,651 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.085.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007085/2007.085.01 done. INFO 2025-06-26 12:32:43,662 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.085.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007085/2007.085.01 done. INFO 2025-06-26 12:32:43,684 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.085.01/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2007/2007085/2007.085.01 done. INFO 2025-06-26 12:32:43,684 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 12:32:43,684 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2007.085.01/dorado_2007.085.01_processing.log /Volumes/AUVCTD/surveys/2007/netcdf