INFO 2025-06-26 10:56:20,020 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:56:20,020 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Conducted from the Sproul on John Ryan's LOCO project - ctdToUse = ctd1 INFO 2025-06-26 10:56:20,020 process.py process_mission():449 [1] Processing LOCO mission 2005.243.03 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:56:20,020 process.py download_process():165 [1] Download and processing steps for 2005.243.03 INFO 2025-06-26 10:56:20,020 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005243/2005.243.03 INFO 2025-06-26 10:56:20,020 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005243/2005.243.03 to /data/auv_data/dorado/missionlogs/2005.243.03 INFO 2025-06-26 10:56:23,206 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.243.03 INFO 2025-06-26 10:56:23,206 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.03/ctdDriver.log (8133971 bytes) INFO 2025-06-26 10:56:23,793 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.03/ctdDriver2.log (8133965 bytes) INFO 2025-06-26 10:56:24,403 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.03/gps.log (113468 bytes) INFO 2025-06-26 10:56:24,423 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.03/hydroscatlog.log (5548994 bytes) INFO 2025-06-26 10:56:25,062 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.243.03/hydroscatlog.log: [41700] INFO 2025-06-26 10:56:25,075 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.03/navigation.log (27274410 bytes) INFO 2025-06-26 10:56:26,982 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.03/isuslog.log (495477 bytes) INFO 2025-06-26 10:56:27,034 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.03/parosci.log (11872214 bytes) INFO 2025-06-26 10:56:28,048 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.03/tailCone.log (5552203 bytes) INFO 2025-06-26 10:56:28,728 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.03/biolume.log (6296124 bytes) INFO 2025-06-26 10:56:29,323 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:56:29,646 logs2netcdfs.py download_process_logs():807 [1] Time to process: 6.44 seconds WARNING 2025-06-26 10:56:29,647 process.py download_process():196 [1] No lopc.bin file for 2005.243.03 INFO 2025-06-26 10:56:29,647 process.py calibrate():227 [1] Calibration steps for 2005.243.03 INFO 2025-06-26 10:56:29,841 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:56:29,843 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:56:30,539 calibrate.py _nudge_pos():1806 [1] 90: 0.180 -0.0002776 0.0000710 7955 26.51 -1.551 0.496 2005-08-31T10:09:05.430071552 INFO 2025-06-26 10:56:31,525 calibrate.py _nudge_pos():1806 [1] 192: 0.200 -0.0002959 -0.0000230 8135 27.11 -1.617 -0.157 2005-08-31T10:37:53.431695232 INFO 2025-06-26 10:56:32,551 calibrate.py _nudge_pos():1806 [1] 299: 0.200 -0.0002848 0.0000454 8199 27.33 -1.545 0.308 2005-08-31T11:06:59.432086016 INFO 2025-06-26 10:56:33,310 calibrate.py _nudge_pos():1806 [1] 378: 0.010 -0.0003131 -0.0000062 8250 27.50 -1.689 -0.042 2005-08-31T11:35:47.623696768 INFO 2025-06-26 10:56:34,147 calibrate.py _nudge_pos():1806 [1] 464: 0.190 -0.0002288 -0.0000605 7704 25.68 -1.322 -0.437 2005-08-31T12:02:53.432321280 INFO 2025-06-26 10:56:35,196 calibrate.py _nudge_pos():1806 [1] 569: 0.010 0.0006112 -0.0011641 8930 29.76 3.047 -7.248 2005-08-31T12:34:23.632833664 INFO 2025-06-26 10:56:36,006 calibrate.py _nudge_pos():1806 [1] 652: 0.010 -0.0006862 0.0004006 9100 30.33 -3.356 2.447 2005-08-31T13:06:05.632537856 INFO 2025-06-26 10:56:36,960 calibrate.py _nudge_pos():1806 [1] 751: 0.200 -0.0017534 0.0004241 8064 26.88 -9.674 2.924 2005-08-31T13:34:36.425340416 INFO 2025-06-26 10:56:36,971 calibrate.py _nudge_pos():1806 [1] 752: 0.010 -0.0000047 0.0000269 20 0.06 -11.103 78.827 2005-08-31T13:34:40.625052672 INFO 2025-06-26 10:56:37,833 calibrate.py _nudge_pos():1806 [1] 840: 0.200 -0.0013500 0.0005221 7969 26.56 -7.535 3.643 2005-08-31T14:02:41.429909760 INFO 2025-06-26 10:56:38,810 calibrate.py _nudge_pos():1806 [1] 940: 0.010 -0.0011345 0.0002880 5720 19.06 -8.821 2.799 2005-08-31T14:23:24.624745088 INFO 2025-06-26 10:56:39,696 calibrate.py _nudge_pos():1806 [1] 1031: 0.010 -0.0020049 -0.0018746 7195 23.98 -12.390 -14.486 2005-08-31T14:48:53.630001024 INFO 2025-06-26 10:56:40,608 calibrate.py _nudge_pos():1806 [1] 1120: 0.020 -0.0024750 -0.0020002 7960 26.53 -13.822 -13.971 2005-08-31T15:16:53.624913408 INFO 2025-06-26 10:56:41,637 calibrate.py _nudge_pos():1806 [1] 1222: 0.020 -0.0025185 -0.0020496 8105 27.01 -13.810 -14.059 2005-08-31T15:45:35.626948352 INFO 2025-06-26 10:56:42,679 calibrate.py _nudge_pos():1806 [1] 1325: 0.010 -0.0014694 -0.0010500 4620 15.40 -14.134 -12.636 2005-08-31T16:02:41.626662528 INFO 2025-06-26 10:56:45,066 calibrate.py _nudge_pos():1862 [1] 1542: - - - 0 0.00 - - INFO 2025-06-26 10:56:45,066 calibrate.py _nudge_pos():1868 [1] Points in final series = 115021 WARNING 2025-06-26 10:56:45,255 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:56:57,514 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:56:58,400 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:56:59,104 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:56:59,106 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.243.03/ctd1.nc INFO 2025-06-26 10:56:59,107 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:56:59,108 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:56:59,108 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:56:59,932 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:57:00,629 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:57:00,631 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.243.03/ctd2.nc INFO 2025-06-26 10:57:00,632 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:57:00,633 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:57:00,633 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:57:00,670 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:57:01,743 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 1140 106020 313080 514140 1227780 1227781 1227782] INFO 2025-06-26 10:57:01,963 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: 0 seconds ERROR 2025-06-26 10:57:01,969 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:57:01,969 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.243.03 ERROR 2025-06-26 10:57:01,969 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.243.03 INFO 2025-06-26 10:57:02,060 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.243.03/dorado_2005.243.03_cal.nc INFO 2025-06-26 10:57:02,164 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:57:02,168 process.py align():251 [1] Alignment steps for 2005.243.03 INFO 2025-06-26 10:57:02,198 align.py process_cal():139 [1] Processing dorado_2005.243.03_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.243.03 INFO 2025-06-26 10:57:02,233 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:57:02,237 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:57:02,322 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:57:02,327 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:57:02,408 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:57:02,413 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:57:02,462 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:57:02,462 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:57:02,495 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:57:02,500 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:57:02,592 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.243.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:57:02,597 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:02,667 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.243.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:57:02,672 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:02,742 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.243.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:57:02,746 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:02,821 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:02,826 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:02,898 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:02,902 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:02,972 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:02,976 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:03,047 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:03,052 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:03,122 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:03,127 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:03,198 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:03,203 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:03,274 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:03,279 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:03,350 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:03,354 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:03,424 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:03,429 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:03,499 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:03,503 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:03,574 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.243.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:03,578 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:03,650 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.243.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:03,654 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:03,724 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.243.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:03,729 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:03,800 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.243.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:03,805 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:03,876 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.243.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:03,880 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:03,952 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.243.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:03,956 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:04,028 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.243.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:04,032 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:04,122 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:57:04,184 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:57:04,246 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:57:04,309 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:57:04,376 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:57:04,431 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.243.03/dorado_2005.243.03_align.nc INFO 2025-06-26 10:57:04,516 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:57:04,518 process.py resample():273 [1] Resampling steps for 2005.243.03 INFO 2025-06-26 10:57:04,519 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:57:04,545 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.243.03/dorado_2005.243.03_align.nc mission netCDF file INFO 2025-06-26 10:57:04,551 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.243.03/dorado_2005.243.03_align.nc mission netCDF file INFO 2025-06-26 10:57:04,553 resample.py get_mission_start_end():1145 [1] navigation: 2005-08-31T09:41:27.633638400 to 2005-08-31T16:06:39.630358272 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 10:57:04,554 resample.py get_mission_start_end():1145 [1] hs2 : 2005-08-31T09:41:11.554739712 to 2005-08-31T16:06:39.630358272 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 10:57:04,556 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-08-31T09:41:34.353177984 to 2005-08-31T16:06:39.550363520 (0 days 00:00:00.109992576 before mission_end) INFO 2025-06-26 10:57:04,558 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-08-31T09:41:34.183189632 to 2005-08-31T16:06:39.640357504 (0 days 00:00:00.019998592 before mission_end) INFO 2025-06-26 10:57:04,559 resample.py get_mission_start_end():1145 [1] isus : 2005-08-31T09:42:37.608844800 to 2005-08-31T16:06:39.660356096 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:57:04,561 resample.py get_mission_start_end():1145 [1] biolume : 2005-08-31T09:41:05.635111040 to 2005-08-31T16:06:39.170355328 (0 days 00:00:00.490000768 before mission_end) INFO 2025-06-26 10:57:04,562 resample.py get_mission_start_end():1145 [1] tailcone : 2005-08-31T09:41:05.795134336 to 2005-08-31T16:06:39.550363520 (0 days 00:00:00.109992576 before mission_end) INFO 2025-06-26 10:57:04,563 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.243.03/dorado_2005.243.03_align.nc mission netCDF file INFO 2025-06-26 10:57:04,563 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:04,816 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:04,860 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:04,905 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:04,948 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:04,985 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,025 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,062 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,098 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,133 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,167 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,201 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,235 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,268 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,302 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,335 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,368 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,404 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,441 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,477 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,512 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,548 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,582 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,599 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,614 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,628 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,645 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,687 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:05,912 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.243.03/dorado_2005.243.03_1S.nc INFO 2025-06-26 10:57:07,142 create_products.py gulper_odv():401 [1] No gulper times found for 2005.243.03 INFO 2025-06-26 10:57:07,142 process.py archive():337 [1] Archiving steps for 2005.243.03 INFO 2025-06-26 10:57:07,142 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.243.03/dorado_2005.243.03, BASE_PATH = /data/auv_data INFO 2025-06-26 10:57:07,143 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.243.03/dorado_2005.243.03 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:57:07,144 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.243.03_1S.nc INFO 2025-06-26 10:57:07,166 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.03/dorado_2005.243.03_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:57:07,167 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.243.03_cal.nc INFO 2025-06-26 10:57:07,278 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.03/dorado_2005.243.03_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:57:07,279 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.243.03_align.nc INFO 2025-06-26 10:57:07,377 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.03/dorado_2005.243.03_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:57:07,404 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.03/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.03 done. INFO 2025-06-26 10:57:07,431 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.03/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.03 done. INFO 2025-06-26 10:57:07,437 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.03 done. INFO 2025-06-26 10:57:07,456 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.03/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.03 done. INFO 2025-06-26 10:57:07,533 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.03 done. INFO 2025-06-26 10:57:07,539 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.03/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.03 done. INFO 2025-06-26 10:57:07,573 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.03 done. INFO 2025-06-26 10:57:07,596 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.03/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.03 done. INFO 2025-06-26 10:57:07,659 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.03/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.03 done. INFO 2025-06-26 10:57:07,660 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:57:07,660 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.03/dorado_2005.243.03_processing.log /Volumes/AUVCTD/surveys/2005/netcdf