INFO 2025-06-26 10:52:48,298 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:52:48,298 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Conducted from the Sproul on John Ryan's LOCO project - ctdToUse = ctd1 INFO 2025-06-26 10:52:48,298 process.py process_mission():449 [1] Processing LOCO mission 2005.241.02 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:52:48,298 process.py download_process():165 [1] Download and processing steps for 2005.241.02 INFO 2025-06-26 10:52:48,298 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005241/2005.241.02 INFO 2025-06-26 10:52:48,298 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005241/2005.241.02 to /data/auv_data/dorado/missionlogs/2005.241.02 INFO 2025-06-26 10:52:51,405 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.241.02 INFO 2025-06-26 10:52:51,405 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.241.02/ctdDriver.log (8239483 bytes) INFO 2025-06-26 10:52:52,024 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.241.02/ctdDriver2.log (8239477 bytes) INFO 2025-06-26 10:52:52,686 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.241.02/gps.log (102668 bytes) INFO 2025-06-26 10:52:52,706 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.241.02/hydroscatlog.log (5621234 bytes) INFO 2025-06-26 10:52:53,429 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.241.02/navigation.log (27626994 bytes) INFO 2025-06-26 10:52:55,461 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.241.02/isuslog.log (504469 bytes) INFO 2025-06-26 10:52:55,513 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.241.02/parosci.log (12025526 bytes) INFO 2025-06-26 10:52:56,543 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.241.02/tailCone.log (5624011 bytes) INFO 2025-06-26 10:52:57,231 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.241.02/biolume.log (6377452 bytes) INFO 2025-06-26 10:52:57,857 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:52:58,188 logs2netcdfs.py download_process_logs():807 [1] Time to process: 6.78 seconds WARNING 2025-06-26 10:52:58,189 process.py download_process():196 [1] No lopc.bin file for 2005.241.02 INFO 2025-06-26 10:52:58,189 process.py calibrate():227 [1] Calibration steps for 2005.241.02 INFO 2025-06-26 10:52:58,387 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:52:58,389 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:52:59,440 calibrate.py _nudge_pos():1806 [1] 127: 0.120 0.0008816 0.0004038 2555 8.51 15.337 8.789 2005-08-29T03:15:42.185444096 INFO 2025-06-26 10:53:00,133 calibrate.py _nudge_pos():1806 [1] 198: 0.120 -0.0001877 -0.0001629 8290 27.63 -1.007 -1.092 2005-08-29T03:44:30.187067776 INFO 2025-06-26 10:53:00,988 calibrate.py _nudge_pos():1806 [1] 286: 0.140 -0.0001137 0.0000594 7815 26.05 -0.647 0.423 2005-08-29T04:12:00.184035328 INFO 2025-06-26 10:53:01,926 calibrate.py _nudge_pos():1806 [1] 381: 0.120 -0.0001914 0.0000742 8320 27.73 -1.023 0.496 2005-08-29T04:41:18.183603968 INFO 2025-06-26 10:53:02,652 calibrate.py _nudge_pos():1806 [1] 455: 0.120 -0.0002692 0.0000304 8185 27.28 -1.463 0.207 2005-08-29T05:09:48.186460928 INFO 2025-06-26 10:53:03,620 calibrate.py _nudge_pos():1806 [1] 555: 0.120 -0.0003027 0.0000515 8205 27.35 -1.642 0.349 2005-08-29T05:38:48.187262720 INFO 2025-06-26 10:53:04,510 calibrate.py _nudge_pos():1806 [1] 646: 0.140 -0.0000749 -0.0006256 9805 32.68 -0.340 -3.547 2005-08-29T06:13:00.186691072 INFO 2025-06-26 10:53:05,423 calibrate.py _nudge_pos():1806 [1] 739: 0.130 -0.0011450 0.0006824 8270 27.56 -6.162 4.588 2005-08-29T06:42:06.187081856 INFO 2025-06-26 10:53:06,299 calibrate.py _nudge_pos():1806 [1] 828: 0.150 -0.0015732 0.0003820 8170 27.23 -8.567 2.600 2005-08-29T07:10:48.179117184 INFO 2025-06-26 10:53:07,133 calibrate.py _nudge_pos():1806 [1] 911: 0.140 -0.0014382 0.0004011 7690 25.63 -8.319 2.900 2005-08-29T07:37:48.178139648 INFO 2025-06-26 10:53:08,073 calibrate.py _nudge_pos():1806 [1] 1006: 0.140 -0.0011104 0.0002243 5770 19.23 -8.559 2.162 2005-08-29T07:58:36.182645504 INFO 2025-06-26 10:53:09,009 calibrate.py _nudge_pos():1806 [1] 1101: 0.140 -0.0017144 -0.0017032 6850 22.83 -11.128 -13.824 2005-08-29T08:23:00.182354688 INFO 2025-06-26 10:53:09,908 calibrate.py _nudge_pos():1806 [1] 1189: 0.150 -0.0022285 -0.0019069 7755 25.85 -12.774 -13.671 2005-08-29T08:50:18.180144256 INFO 2025-06-26 10:53:10,842 calibrate.py _nudge_pos():1806 [1] 1281: 0.150 -0.0023041 -0.0019444 7915 26.38 -12.937 -13.658 2005-08-29T09:18:12.185467008 INFO 2025-06-26 10:53:11,742 calibrate.py _nudge_pos():1806 [1] 1370: 0.150 -0.0014123 -0.0010195 4570 15.23 -13.733 -12.404 2005-08-29T09:34:54.186825216 INFO 2025-06-26 10:53:12,177 calibrate.py _nudge_pos():1862 [1] 1392: - - - 4 0.01 - - INFO 2025-06-26 10:53:12,178 calibrate.py _nudge_pos():1868 [1] Points in final series = 117054 WARNING 2025-06-26 10:53:12,370 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:53:13,317 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:53:14,229 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:53:14,941 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:53:14,943 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.241.02/ctd1.nc INFO 2025-06-26 10:53:14,945 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:53:14,945 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:53:14,945 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:53:15,799 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:53:16,562 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:53:16,564 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.241.02/ctd2.nc INFO 2025-06-26 10:53:16,566 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd2_salinity values to NaN INFO 2025-06-26 10:53:16,566 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:53:16,566 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:53:16,606 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:53:17,740 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 64320 345360 488520 488700 767040 783780 887820 917640 1248360 1284540 1356960] INFO 2025-06-26 10:53:17,970 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:53:17,976 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:53:17,977 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.241.02 ERROR 2025-06-26 10:53:17,977 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.241.02 INFO 2025-06-26 10:53:18,074 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.241.02/dorado_2005.241.02_cal.nc INFO 2025-06-26 10:53:18,181 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:53:18,186 process.py align():251 [1] Alignment steps for 2005.241.02 INFO 2025-06-26 10:53:18,220 align.py process_cal():139 [1] Processing dorado_2005.241.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.241.02 INFO 2025-06-26 10:53:18,256 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:53:18,261 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:53:18,348 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:53:18,354 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:53:18,439 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:53:18,444 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:53:18,495 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:53:18,496 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:53:18,529 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:53:18,534 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:53:18,617 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.241.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:53:18,622 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:18,694 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.241.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:53:18,698 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:18,774 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.241.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:53:18,779 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:18,852 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.241.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:18,856 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:18,929 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.241.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:18,934 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:19,007 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.241.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:19,012 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:19,084 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.241.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:19,089 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:19,161 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.241.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:19,166 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:19,242 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.241.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:19,247 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:19,320 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.241.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:19,325 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:19,400 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.241.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:19,405 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:19,478 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.241.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:19,483 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:19,556 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.241.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:19,560 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:19,636 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.241.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:19,641 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:19,717 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.241.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:19,722 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:19,798 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.241.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:19,803 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:19,878 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.241.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:19,883 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:19,955 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.241.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:19,960 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:20,038 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.241.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:20,043 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:20,118 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.241.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:20,123 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:20,218 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:53:20,282 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:53:20,347 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:53:20,412 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:53:20,482 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:53:20,541 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.241.02/dorado_2005.241.02_align.nc INFO 2025-06-26 10:53:20,631 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:53:20,634 process.py resample():273 [1] Resampling steps for 2005.241.02 INFO 2025-06-26 10:53:20,635 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:53:20,661 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.241.02/dorado_2005.241.02_align.nc mission netCDF file INFO 2025-06-26 10:53:20,668 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.241.02/dorado_2005.241.02_align.nc mission netCDF file INFO 2025-06-26 10:53:20,669 resample.py get_mission_start_end():1145 [1] navigation: 2005-08-29T03:05:27.187574400 to 2005-08-29T09:35:37.983825024 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 10:53:20,671 resample.py get_mission_start_end():1145 [1] hs2 : 2005-08-29T03:05:09.378794240 to 2005-08-29T09:35:37.953826944 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 10:53:20,673 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-08-29T03:05:32.937180544 to 2005-08-29T09:35:37.893831040 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 10:53:20,675 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-08-29T03:05:32.947179776 to 2005-08-29T09:35:37.893831040 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 10:53:20,676 resample.py get_mission_start_end():1145 [1] isus : 2005-08-29T03:06:34.022995712 to 2005-08-29T09:35:37.943827584 (0 days 00:00:00.069995264 before mission_end) INFO 2025-06-26 10:53:20,677 resample.py get_mission_start_end():1145 [1] biolume : 2005-08-29T03:05:04.599087488 to 2005-08-29T09:35:37.103850880 (0 days 00:00:00.909971968 before mission_end) INFO 2025-06-26 10:53:20,679 resample.py get_mission_start_end():1145 [1] tailcone : 2005-08-29T03:05:05.029092352 to 2005-08-29T09:35:38.013822848 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:53:20,680 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.241.02/dorado_2005.241.02_align.nc mission netCDF file INFO 2025-06-26 10:53:20,680 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:20,947 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:20,992 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,037 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,081 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,120 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,159 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,197 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,235 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,271 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,306 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,344 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,379 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,414 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,449 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,503 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,539 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,576 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,613 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,650 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,687 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,723 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,760 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,778 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,794 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,808 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,825 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:21,868 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:22,104 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.241.02/dorado_2005.241.02_1S.nc INFO 2025-06-26 10:53:23,454 create_products.py gulper_odv():401 [1] No gulper times found for 2005.241.02 INFO 2025-06-26 10:53:23,455 process.py archive():337 [1] Archiving steps for 2005.241.02 INFO 2025-06-26 10:53:23,455 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.241.02/dorado_2005.241.02, BASE_PATH = /data/auv_data INFO 2025-06-26 10:53:23,456 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.241.02/dorado_2005.241.02 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:53:23,457 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.241.02_1S.nc INFO 2025-06-26 10:53:23,479 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.02/dorado_2005.241.02_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:53:23,480 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.241.02_cal.nc INFO 2025-06-26 10:53:23,588 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.02/dorado_2005.241.02_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:53:23,589 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.241.02_align.nc INFO 2025-06-26 10:53:23,688 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.02/dorado_2005.241.02_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:53:23,718 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005241/2005.241.02 done. INFO 2025-06-26 10:53:23,745 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005241/2005.241.02 done. INFO 2025-06-26 10:53:23,751 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005241/2005.241.02 done. INFO 2025-06-26 10:53:23,771 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005241/2005.241.02 done. INFO 2025-06-26 10:53:23,849 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005241/2005.241.02 done. INFO 2025-06-26 10:53:23,856 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005241/2005.241.02 done. INFO 2025-06-26 10:53:23,895 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005241/2005.241.02 done. INFO 2025-06-26 10:53:23,919 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005241/2005.241.02 done. INFO 2025-06-26 10:53:23,985 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005241/2005.241.02 done. INFO 2025-06-26 10:53:23,985 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:53:23,985 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.02/dorado_2005.241.02_processing.log /Volumes/AUVCTD/surveys/2005/netcdf