INFO 2025-06-26 10:43:11,741 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:43:11,741 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled 7/26/05 - ctdToUse = ctd1 INFO 2025-06-26 10:43:11,741 process.py process_mission():449 [1] Processing AUVCTD mission 2005.194.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:43:11,741 process.py download_process():165 [1] Download and processing steps for 2005.194.00 INFO 2025-06-26 10:43:11,741 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005194/2005.194.00 INFO 2025-06-26 10:43:11,741 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005194/2005.194.00 to /data/auv_data/dorado/missionlogs/2005.194.00 INFO 2025-06-26 10:43:12,333 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.194.00 INFO 2025-06-26 10:43:12,333 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.194.00/ctdDriver.log (6299875 bytes) INFO 2025-06-26 10:43:12,800 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.194.00/ctdDriver2.log (6299781 bytes) INFO 2025-06-26 10:43:13,266 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.194.00/gps.log (47948 bytes) INFO 2025-06-26 10:43:13,280 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.194.00/hydroscatlog.log (4299194 bytes) INFO 2025-06-26 10:43:13,791 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.194.00/navigation.log (21124486 bytes) INFO 2025-06-26 10:43:15,330 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.194.00/isuslog.log (386133 bytes) INFO 2025-06-26 10:43:15,371 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.194.00/isuslog.log: [1 3 4 5 6 8] INFO 2025-06-26 10:43:15,372 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.194.00/parosci.log (9217670 bytes) INFO 2025-06-26 10:43:16,156 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.194.00/tailCone.log (4301707 bytes) INFO 2025-06-26 10:43:16,689 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.194.00/biolume.log (4878188 bytes) INFO 2025-06-26 10:43:17,157 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:43:17,412 logs2netcdfs.py download_process_logs():807 [1] Time to process: 5.08 seconds WARNING 2025-06-26 10:43:17,412 process.py download_process():196 [1] No lopc.bin file for 2005.194.00 INFO 2025-06-26 10:43:17,412 process.py calibrate():227 [1] Calibration steps for 2005.194.00 INFO 2025-06-26 10:43:17,573 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:43:17,575 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:43:19,022 calibrate.py _nudge_pos():1806 [1] 170: 0.070 0.0032158 -0.0017844 12010 40.03 11.931 -8.260 2005-07-13T17:09:55.112697600 INFO 2025-06-26 10:43:19,717 calibrate.py _nudge_pos():1806 [1] 242: 0.070 0.0028257 -0.0019303 12065 40.21 10.435 -8.895 2005-07-13T17:51:19.112531840 INFO 2025-06-26 10:43:20,299 calibrate.py _nudge_pos():1806 [1] 303: 0.060 0.0026694 -0.0020216 12000 40.00 9.910 -9.366 2005-07-13T18:32:19.114010368 INFO 2025-06-26 10:43:20,923 calibrate.py _nudge_pos():1806 [1] 369: 0.060 0.0040395 -0.0016123 12005 40.01 14.989 -7.467 2005-07-13T19:13:25.115077760 INFO 2025-06-26 10:43:21,641 calibrate.py _nudge_pos():1806 [1] 442: 0.080 0.0039540 -0.0007816 12120 40.40 14.531 -3.585 2005-07-13T19:55:01.114089984 INFO 2025-06-26 10:43:22,265 calibrate.py _nudge_pos():1806 [1] 507: 0.070 0.0034826 -0.0000626 11920 39.73 13.012 -0.292 2005-07-13T20:35:49.116390528 INFO 2025-06-26 10:43:22,804 calibrate.py _nudge_pos():1806 [1] 563: 0.070 0.0000121 -0.0000286 20 0.06 28.362 -83.791 2005-07-13T20:36:48.112348800 INFO 2025-06-26 10:43:22,891 calibrate.py _nudge_pos():1806 [1] 572: 0.070 0.0026184 -0.0002677 11485 38.28 10.153 -1.296 2005-07-13T21:15:13.114445440 INFO 2025-06-26 10:43:23,417 calibrate.py _nudge_pos():1806 [1] 626: 0.090 -0.0002292 -0.0001516 2765 9.21 -3.692 -3.049 2005-07-13T21:25:19.112931712 INFO 2025-06-26 10:43:23,682 calibrate.py _nudge_pos():1862 [1] 632: - - - 2 0.00 - - INFO 2025-06-26 10:43:23,682 calibrate.py _nudge_pos():1868 [1] Points in final series = 89502 WARNING 2025-06-26 10:43:23,900 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:43:24,566 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:43:25,248 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:43:25,781 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:43:25,783 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.194.00/ctd1.nc INFO 2025-06-26 10:43:25,785 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:43:25,785 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:43:25,785 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:43:26,435 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:43:26,980 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:43:26,982 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.194.00/ctd2.nc INFO 2025-06-26 10:43:26,984 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:43:26,984 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:43:26,984 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:43:27,585 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:43:28,604 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:43:28,609 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:43:28,610 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.194.00 ERROR 2025-06-26 10:43:28,610 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.194.00 INFO 2025-06-26 10:43:28,680 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.194.00/dorado_2005.194.00_cal.nc INFO 2025-06-26 10:43:28,768 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:43:28,772 process.py align():251 [1] Alignment steps for 2005.194.00 INFO 2025-06-26 10:43:28,800 align.py process_cal():139 [1] Processing dorado_2005.194.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.194.00 INFO 2025-06-26 10:43:28,827 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:43:28,830 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:43:28,895 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:43:28,899 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:43:28,964 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:43:28,968 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:43:29,009 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:43:29,010 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:43:29,037 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:43:29,041 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:43:29,105 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.194.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:43:29,109 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:29,167 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.194.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:43:29,171 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:29,229 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.194.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:43:29,232 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:29,290 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.194.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:29,294 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:29,352 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.194.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:29,356 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:29,413 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.194.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:29,417 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:29,474 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.194.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:29,478 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:29,537 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.194.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:29,541 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:29,598 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.194.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:29,602 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:29,659 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.194.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:29,663 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:29,720 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.194.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:29,724 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:29,780 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.194.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:29,784 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:29,841 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.194.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:29,845 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:29,901 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.194.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:29,905 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:29,963 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.194.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:29,967 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:30,027 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.194.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:30,032 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:30,091 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.194.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:30,095 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:30,153 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.194.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:30,158 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:30,215 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.194.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:30,219 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:30,279 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.194.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:30,282 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:30,356 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:43:30,407 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:43:30,458 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:43:30,511 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:43:30,567 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:43:30,612 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.194.00/dorado_2005.194.00_align.nc INFO 2025-06-26 10:43:30,689 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:43:30,691 process.py resample():273 [1] Resampling steps for 2005.194.00 INFO 2025-06-26 10:43:30,692 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:43:30,717 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.194.00/dorado_2005.194.00_align.nc mission netCDF file INFO 2025-06-26 10:43:30,723 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.194.00/dorado_2005.194.00_align.nc mission netCDF file INFO 2025-06-26 10:43:30,724 resample.py get_mission_start_end():1145 [1] navigation: 2005-07-13T16:27:26.327301504 to 2005-07-13T21:25:46.511054720 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:43:30,726 resample.py get_mission_start_end():1145 [1] hs2 : 2005-07-13T16:27:08.938492544 to 2005-07-13T21:25:46.441059584 (0 days 00:00:00.069995136 before mission_end) INFO 2025-06-26 10:43:30,727 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-07-13T16:27:31.636937600 to 2005-07-13T21:25:46.451058816 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 10:43:30,729 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-07-13T16:27:31.866921856 to 2005-07-13T21:25:46.421060992 (0 days 00:00:00.089993728 before mission_end) INFO 2025-06-26 10:43:30,731 resample.py get_mission_start_end():1145 [1] isus : 2005-07-13T16:28:07.524479104 to 2005-07-13T21:25:46.021088384 (0 days 00:00:00.489966336 before mission_end) INFO 2025-06-26 10:43:30,732 resample.py get_mission_start_end():1145 [1] biolume : 2005-07-13T16:27:04.138787328 to 2005-07-13T21:25:45.221108864 (0 days 00:00:01.289945856 before mission_end) INFO 2025-06-26 10:43:30,734 resample.py get_mission_start_end():1145 [1] tailcone : 2005-07-13T16:27:04.708782464 to 2005-07-13T21:25:46.501055488 (0 days 00:00:00.009999232 before mission_end) INFO 2025-06-26 10:43:30,734 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.194.00/dorado_2005.194.00_align.nc mission netCDF file INFO 2025-06-26 10:43:30,735 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:30,935 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:30,971 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,006 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,042 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,074 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,105 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,136 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,166 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,193 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,221 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,249 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,277 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,306 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,334 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,363 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,390 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,420 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,449 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,478 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,507 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,536 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,565 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,579 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,593 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,606 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,620 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,653 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:31,853 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.194.00/dorado_2005.194.00_1S.nc INFO 2025-06-26 10:43:32,795 create_products.py gulper_odv():401 [1] No gulper times found for 2005.194.00 INFO 2025-06-26 10:43:32,795 process.py archive():337 [1] Archiving steps for 2005.194.00 INFO 2025-06-26 10:43:32,795 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.194.00/dorado_2005.194.00, BASE_PATH = /data/auv_data INFO 2025-06-26 10:43:32,796 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.194.00/dorado_2005.194.00 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:43:32,797 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.194.00_1S.nc INFO 2025-06-26 10:43:32,813 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.194.00/dorado_2005.194.00_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:43:32,814 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.194.00_cal.nc INFO 2025-06-26 10:43:32,894 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.194.00/dorado_2005.194.00_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:43:32,895 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.194.00_align.nc INFO 2025-06-26 10:43:32,971 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.194.00/dorado_2005.194.00_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:43:32,993 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.194.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005194/2005.194.00 done. INFO 2025-06-26 10:43:33,014 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.194.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005194/2005.194.00 done. INFO 2025-06-26 10:43:33,019 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.194.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005194/2005.194.00 done. INFO 2025-06-26 10:43:33,033 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.194.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005194/2005.194.00 done. INFO 2025-06-26 10:43:33,094 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.194.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005194/2005.194.00 done. INFO 2025-06-26 10:43:33,101 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.194.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005194/2005.194.00 done. INFO 2025-06-26 10:43:33,129 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.194.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005194/2005.194.00 done. INFO 2025-06-26 10:43:33,149 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.194.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005194/2005.194.00 done. INFO 2025-06-26 10:43:33,200 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.194.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005194/2005.194.00 done. INFO 2025-06-26 10:43:33,201 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:43:33,201 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.194.00/dorado_2005.194.00_processing.log /Volumes/AUVCTD/surveys/2005/netcdf