INFO 2025-06-26 10:40:23,034 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:40:23,034 process.py process_mission():434 [1] dorado_info[mission]["comment"] = First mission (161.00) failed to make netCDFs by SSDS (??) - ctdToUse = ctd1 INFO 2025-06-26 10:40:23,034 process.py process_mission():449 [1] Processing BIOLUME mission 2005.161.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:40:23,034 process.py download_process():165 [1] Download and processing steps for 2005.161.00 INFO 2025-06-26 10:40:23,034 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005161/2005.161.00 INFO 2025-06-26 10:40:23,035 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005161/2005.161.00 to /data/auv_data/dorado/missionlogs/2005.161.00 INFO 2025-06-26 10:40:23,305 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.161.00 INFO 2025-06-26 10:40:23,305 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.161.00/ctdDriver.log (2354131 bytes) INFO 2025-06-26 10:40:23,477 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.161.00/ctdDriver2.log (2353949 bytes) INFO 2025-06-26 10:40:23,654 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.161.00/gps.log (51476 bytes) INFO 2025-06-26 10:40:23,669 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.161.00/hydroscatlog.log (1609874 bytes) INFO 2025-06-26 10:40:23,862 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.161.00/navigation.log (7895270 bytes) INFO 2025-06-26 10:40:24,432 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.161.00/isuslog.log (144405 bytes) INFO 2025-06-26 10:40:24,450 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.161.00/isuslog.log: [1 2 3 4 6 7] INFO 2025-06-26 10:40:24,451 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.161.00/parosci.log (3444806 bytes) INFO 2025-06-26 10:40:24,745 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.161.00/parosci.log: [55334 55335] INFO 2025-06-26 10:40:24,755 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.161.00/tailCone.log (1611403 bytes) INFO 2025-06-26 10:40:24,959 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.161.00/biolume.log (1829068 bytes) INFO 2025-06-26 10:40:25,147 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:40:25,247 logs2netcdfs.py download_process_logs():807 [1] Time to process: 1.94 seconds WARNING 2025-06-26 10:40:25,247 process.py download_process():196 [1] No lopc.bin file for 2005.161.00 INFO 2025-06-26 10:40:25,247 process.py calibrate():227 [1] Calibration steps for 2005.161.00 INFO 2025-06-26 10:40:25,348 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:40:25,350 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:40:26,895 calibrate.py _nudge_pos():1806 [1] 179: 0.060 -0.0000335 -0.0000000 1875 6.25 -0.794 -0.000 2005-06-10T03:43:24.603836800 INFO 2025-06-26 10:40:27,951 calibrate.py _nudge_pos():1806 [1] 290: 0.050 -0.0006080 0.0002386 9646 32.16 -2.801 1.374 2005-06-10T04:17:24.604087168 INFO 2025-06-26 10:40:28,571 calibrate.py _nudge_pos():1806 [1] 355: 0.050 -0.0005876 0.0002291 10057 33.53 -2.598 1.266 2005-06-10T04:52:00.601871744 INFO 2025-06-26 10:40:29,209 calibrate.py _nudge_pos():1806 [1] 422: 0.060 -0.0006846 -0.0000817 8489 28.30 -3.587 -0.535 2005-06-10T05:21:24.601029376 INFO 2025-06-26 10:40:31,887 calibrate.py _nudge_pos():1862 [1] 681: - - - 3 0.01 - - INFO 2025-06-26 10:40:31,887 calibrate.py _nudge_pos():1868 [1] Points in final series = 33444 WARNING 2025-06-26 10:40:33,053 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:40:33,316 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:40:33,587 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:40:33,794 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:40:33,795 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.161.00/ctd1.nc INFO 2025-06-26 10:40:33,797 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:40:33,797 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:40:33,797 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:40:34,046 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:40:34,253 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:40:34,254 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.161.00/ctd2.nc INFO 2025-06-26 10:40:34,256 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:40:34,256 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:40:34,256 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:40:34,483 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:40:34,840 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [4680 4920] INFO 2025-06-26 10:40:34,902 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:40:34,908 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:40:34,908 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.161.00 ERROR 2025-06-26 10:40:34,908 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.161.00 INFO 2025-06-26 10:40:34,937 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.161.00/dorado_2005.161.00_cal.nc INFO 2025-06-26 10:40:34,998 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:40:35,003 process.py align():251 [1] Alignment steps for 2005.161.00 INFO 2025-06-26 10:40:35,030 align.py process_cal():139 [1] Processing dorado_2005.161.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.161.00 INFO 2025-06-26 10:40:35,043 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:40:35,045 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:40:35,075 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:40:35,078 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:40:35,107 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:40:35,109 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:40:35,127 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:40:35,127 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:40:35,139 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:40:35,142 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:40:35,170 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.161.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:40:35,172 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:40:35,199 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.161.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:40:35,202 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:40:35,228 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.161.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:40:35,230 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:40:35,257 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.161.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:40:35,260 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:40:35,287 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.161.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:40:35,290 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:40:35,316 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.161.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:40:35,318 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:40:35,345 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.161.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:40:35,348 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:40:35,374 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.161.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:40:35,377 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:40:35,403 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.161.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:40:35,406 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:40:35,432 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.161.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:40:35,435 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:40:35,461 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.161.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:40:35,464 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:40:35,491 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.161.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:40:35,494 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:40:35,522 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.161.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:40:35,525 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:40:35,552 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.161.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:40:35,555 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:40:35,582 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.161.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:40:35,585 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:40:35,612 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.161.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:40:35,615 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:40:35,642 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.161.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:40:35,644 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:40:35,671 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.161.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:40:35,674 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:40:35,701 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.161.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:40:35,704 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:40:35,731 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.161.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:40:35,733 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:40:35,767 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.68 INFO 2025-06-26 10:40:35,793 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.68 INFO 2025-06-26 10:40:35,821 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.68 INFO 2025-06-26 10:40:35,849 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:40:35,879 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:40:35,902 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.161.00/dorado_2005.161.00_align.nc INFO 2025-06-26 10:40:35,960 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:40:35,962 process.py resample():273 [1] Resampling steps for 2005.161.00 INFO 2025-06-26 10:40:35,962 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:40:35,986 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.161.00/dorado_2005.161.00_align.nc mission netCDF file INFO 2025-06-26 10:40:35,991 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.161.00/dorado_2005.161.00_align.nc mission netCDF file INFO 2025-06-26 10:40:35,992 resample.py get_mission_start_end():1145 [1] navigation: 2005-06-10T03:34:34.420156928 to 2005-06-10T05:26:05.201806976 (0 days 00:00:00.019998592 before mission_end) INFO 2025-06-26 10:40:35,994 resample.py get_mission_start_end():1145 [1] hs2 : 2005-06-10T03:34:17.841292672 to 2005-06-10T05:26:05.181808256 (0 days 00:00:00.039997312 before mission_end) INFO 2025-06-26 10:40:35,995 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-06-10T03:34:39.389816576 to 2005-06-10T05:26:05.211806336 (0 days 00:00:00.009999232 before mission_end) INFO 2025-06-26 10:40:35,997 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-06-10T03:34:39.649798656 to 2005-06-10T05:26:05.221805568 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:40:35,998 resample.py get_mission_start_end():1145 [1] isus : 2005-06-10T03:35:13.217499008 to 2005-06-10T05:26:04.951824000 (0 days 00:00:00.269981568 before mission_end) INFO 2025-06-26 10:40:35,999 resample.py get_mission_start_end():1145 [1] biolume : 2005-06-10T03:34:11.541689856 to 2005-06-10T05:26:03.821867264 (0 days 00:00:01.399938304 before mission_end) INFO 2025-06-26 10:40:36,001 resample.py get_mission_start_end():1145 [1] tailcone : 2005-06-10T03:34:12.401665152 to 2005-06-10T05:26:05.131811584 (0 days 00:00:00.089993984 before mission_end) INFO 2025-06-26 10:40:36,001 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.161.00/dorado_2005.161.00_align.nc mission netCDF file INFO 2025-06-26 10:40:36,002 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,096 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,114 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,131 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,150 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,166 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,182 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,198 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,214 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,229 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,243 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,258 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,272 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,287 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,301 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,316 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,330 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,346 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,362 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,378 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,394 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,410 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,427 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,439 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,449 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,459 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,470 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,488 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:40:36,619 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.161.00/dorado_2005.161.00_1S.nc INFO 2025-06-26 10:40:37,365 create_products.py gulper_odv():401 [1] No gulper times found for 2005.161.00 INFO 2025-06-26 10:40:37,365 process.py archive():337 [1] Archiving steps for 2005.161.00 INFO 2025-06-26 10:40:37,365 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.161.00/dorado_2005.161.00, BASE_PATH = /data/auv_data INFO 2025-06-26 10:40:37,365 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.161.00/dorado_2005.161.00 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:40:37,367 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.161.00_1S.nc INFO 2025-06-26 10:40:37,380 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.00/dorado_2005.161.00_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:40:37,381 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.161.00_cal.nc INFO 2025-06-26 10:40:37,416 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.00/dorado_2005.161.00_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:40:37,417 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.161.00_align.nc INFO 2025-06-26 10:40:37,450 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.00/dorado_2005.161.00_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:40:37,463 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005161/2005.161.00 done. INFO 2025-06-26 10:40:37,475 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005161/2005.161.00 done. INFO 2025-06-26 10:40:37,479 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005161/2005.161.00 done. INFO 2025-06-26 10:40:37,489 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005161/2005.161.00 done. INFO 2025-06-26 10:40:37,514 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005161/2005.161.00 done. INFO 2025-06-26 10:40:37,519 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005161/2005.161.00 done. INFO 2025-06-26 10:40:37,534 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005161/2005.161.00 done. INFO 2025-06-26 10:40:37,544 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005161/2005.161.00 done. INFO 2025-06-26 10:40:37,566 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005161/2005.161.00 done. INFO 2025-06-26 10:40:37,567 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:40:37,567 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.00/dorado_2005.161.00_processing.log /Volumes/AUVCTD/surveys/2005/netcdf