INFO 2025-06-26 10:32:54,386 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber
INFO 2025-06-26 10:32:54,386 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Depth abort problems - lots of missions for this biolume survey - ctdToUse = ctd1 
INFO 2025-06-26 10:32:54,386 process.py process_mission():449 [1] Processing BIOLUME mission 2005.027.13 by user docker_user on host eae60d30a712
INFO 2025-06-26 10:32:54,386 process.py download_process():165 [1] Download and processing steps for 2005.027.13
INFO 2025-06-26 10:32:54,386 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005027/2005.027.13
INFO 2025-06-26 10:32:54,386 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005027/2005.027.13 to /data/auv_data/dorado/missionlogs/2005.027.13
INFO 2025-06-26 10:32:54,474 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.027.13
INFO 2025-06-26 10:32:54,474 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.13/ctdDriver.log (156419 bytes)
INFO 2025-06-26 10:32:54,494 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.13/ctdDriver2.log (160021 bytes)
INFO 2025-06-26 10:32:54,512 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.13/gps.log (13172 bytes)
INFO 2025-06-26 10:32:54,521 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.13/hydroscatlog.log (110654 bytes)
INFO 2025-06-26 10:32:54,541 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.13/navigation.log (521922 bytes)
INFO 2025-06-26 10:32:54,591 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.13/isuslog.log (1813 bytes)
INFO 2025-06-26 10:32:54,595 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.13/parosci.log (109814 bytes)
INFO 2025-06-26 10:32:54,608 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.13/tailCone.log (111211 bytes)
INFO 2025-06-26 10:32:54,628 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.13/biolume.log (128524 bytes)
INFO 2025-06-26 10:32:54,643 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data
INFO 2025-06-26 10:32:54,652 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.18 seconds
WARNING 2025-06-26 10:32:54,653 process.py download_process():196 [1] No lopc.bin file for 2005.027.13
INFO 2025-06-26 10:32:54,653 process.py calibrate():227 [1] Calibration steps for 2005.027.13
INFO 2025-06-26 10:32:54,710 calibrate.py _nudge_pos():1680 [1] seg#   end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2025-06-26 10:32:54,712 calibrate.py _nudge_pos():1711 [1]                   -            -            -         0      0.00              -              -                             -
INFO 2025-06-26 10:32:55,093 calibrate.py _nudge_pos():1806 [1]    58:        0.100   -0.0000552    0.0000086        40      0.13        -62.996         12.299 2005-01-27T06:47:29.374486400
INFO 2025-06-26 10:32:55,308 calibrate.py _nudge_pos():1806 [1]    80:        0.100   -0.0001581   -0.0003520      1430      4.76         -4.926        -13.695 2005-01-27T06:52:36.373455488
INFO 2025-06-26 10:32:56,153 calibrate.py _nudge_pos():1862 [1]  149:            -            -            -         2      0.00              -              -
INFO 2025-06-26 10:32:56,153 calibrate.py _nudge_pos():1868 [1] Points in final series = 2202
WARNING 2025-06-26 10:32:56,159 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz
INFO 2025-06-26 10:32:56,192 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds
INFO 2025-06-26 10:32:56,228 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds
INFO 2025-06-26 10:32:56,244 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds
INFO 2025-06-26 10:32:56,245 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.027.13/ctd1.nc
INFO 2025-06-26 10:32:56,246 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN
INFO 2025-06-26 10:32:56,246 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))]
INFO 2025-06-26 10:32:56,246 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1
INFO 2025-06-26 10:32:56,276 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 8 seconds, d_end_time_diff: -1 seconds
INFO 2025-06-26 10:32:56,292 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 8 seconds, d_end_time_diff: -1 seconds
INFO 2025-06-26 10:32:56,294 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.027.13/ctd2.nc
INFO 2025-06-26 10:32:56,295 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN
INFO 2025-06-26 10:32:56,295 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))]
INFO 2025-06-26 10:32:56,295 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2
INFO 2025-06-26 10:32:56,302 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz
INFO 2025-06-26 10:32:56,328 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds
ERROR 2025-06-26 10:32:56,333 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']"
ERROR 2025-06-26 10:32:56,333 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.027.13
ERROR 2025-06-26 10:32:56,333 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.027.13
INFO 2025-06-26 10:32:56,338 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.027.13/dorado_2005.027.13_cal.nc
INFO 2025-06-26 10:32:56,377 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time
INFO 2025-06-26 10:32:56,381 process.py align():251 [1] Alignment steps for 2005.027.13
INFO 2025-06-26 10:32:56,401 align.py process_cal():139 [1] Processing dorado_2005.027.13_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.027.13
INFO 2025-06-26 10:32:56,406 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-06-26 10:32:56,407 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 10:32:56,418 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-06-26 10:32:56,419 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 10:32:56,428 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-06-26 10:32:56,429 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 10:32:56,434 align.py process_cal():161 [1] Skipping navigation_posx
INFO 2025-06-26 10:32:56,435 align.py process_cal():161 [1] Skipping navigation_posy
INFO 2025-06-26 10:32:56,438 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-06-26 10:32:56,440 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 10:32:56,449 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.027.13_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794)
INFO 2025-06-26 10:32:56,450 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:32:56,460 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.027.13_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794)
INFO 2025-06-26 10:32:56,461 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:32:56,471 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.027.13_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794)
INFO 2025-06-26 10:32:56,473 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:32:56,482 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.13_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:32:56,484 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:32:56,493 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.13_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:32:56,495 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:32:56,504 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.13_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:32:56,505 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:32:56,514 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.13_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:32:56,516 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:32:56,525 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.13_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:32:56,527 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:32:56,536 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.13_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:32:56,538 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:32:56,547 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.13_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:32:56,549 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:32:56,558 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.13_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:32:56,560 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:32:56,570 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.13_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:32:56,571 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:32:56,581 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.13_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:32:56,582 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:32:56,592 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.13_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:32:56,594 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:32:56,604 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.13_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:32:56,606 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:32:56,615 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.13_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:32:56,617 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:32:56,627 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.13_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:32:56,629 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:32:56,638 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.13_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:32:56,640 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:32:56,650 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.13_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:32:56,652 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:32:56,662 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.13_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 10:32:56,663 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 10:32:56,676 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.13
INFO 2025-06-26 10:32:56,687 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.13
INFO 2025-06-26 10:32:56,699 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.13
INFO 2025-06-26 10:32:56,712 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00
INFO 2025-06-26 10:32:56,725 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 10:32:56,735 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.027.13/dorado_2005.027.13_align.nc
INFO 2025-06-26 10:32:56,776 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time
INFO 2025-06-26 10:32:56,778 process.py resample():273 [1] Resampling steps for 2005.027.13
INFO 2025-06-26 10:32:56,779 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m
INFO 2025-06-26 10:32:56,798 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.027.13/dorado_2005.027.13_align.nc mission netCDF file
INFO 2025-06-26 10:32:56,803 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.027.13/dorado_2005.027.13_align.nc mission netCDF file
INFO 2025-06-26 10:32:56,804 resample.py get_mission_start_end():1145 [1] navigation: 2005-01-27T06:46:46.387431424 to 2005-01-27T06:54:06.777262464 (0 days 00:00:00.079994624 before mission_end)
INFO 2025-06-26 10:32:56,805 resample.py get_mission_start_end():1145 [1] hs2       : 2005-01-27T06:46:29.708573824 to 2005-01-27T06:54:06.707267328 (0 days 00:00:00.149989760 before mission_end)
INFO 2025-06-26 10:32:56,806 resample.py get_mission_start_end():1145 [1] ctd1      : 2005-01-27T06:46:44.467562880 to 2005-01-27T06:54:06.677269504 (0 days 00:00:00.179987584 before mission_end)
INFO 2025-06-26 10:32:56,808 resample.py get_mission_start_end():1145 [1] ctd2      : 2005-01-27T06:46:34.278260992 to 2005-01-27T06:54:06.757263872 (0 days 00:00:00.099993216 before mission_end)
INFO 2025-06-26 10:32:56,809 resample.py get_mission_start_end():1145 [1] isus      : 2005-01-27T06:47:50.003073408 to 2005-01-27T06:54:03.387494784 (0 days 00:00:03.469762304 before mission_end)
INFO 2025-06-26 10:32:56,810 resample.py get_mission_start_end():1145 [1] biolume   : 2005-01-27T06:46:24.878870528 to 2005-01-27T06:54:05.827293440 (0 days 00:00:01.029963648 before mission_end)
INFO 2025-06-26 10:32:56,811 resample.py get_mission_start_end():1145 [1] tailcone  : 2005-01-27T06:46:25.868836864 to 2005-01-27T06:54:06.857257088 (0 days 00:00:00 before mission_end)
INFO 2025-06-26 10:32:56,812 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.027.13/dorado_2005.027.13_align.nc mission netCDF file
INFO 2025-06-26 10:32:56,812 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter 
INFO 2025-06-26 10:32:56,843 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:56,853 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:56,862 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:56,870 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:56,879 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:56,887 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:56,895 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:56,903 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:56,910 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:56,917 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:56,924 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:56,931 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:56,938 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:56,945 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:56,952 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:56,959 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:56,967 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:56,976 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:56,984 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:56,992 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:57,000 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:57,009 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:57,017 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:57,025 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:57,033 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:57,042 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:57,051 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter
INFO 2025-06-26 10:32:57,143 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.027.13/dorado_2005.027.13_1S.nc
INFO 2025-06-26 10:32:57,593 create_products.py gulper_odv():401 [1] No gulper times found for 2005.027.13
INFO 2025-06-26 10:32:57,593 process.py archive():337 [1] Archiving steps for 2005.027.13
INFO 2025-06-26 10:32:57,593 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.027.13/dorado_2005.027.13, BASE_PATH = /data/auv_data
INFO 2025-06-26 10:32:57,593 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.027.13/dorado_2005.027.13 files to /Volumes/AUVCTD/surveys/2005/netcdf
INFO 2025-06-26 10:32:57,594 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.027.13_1S.nc
INFO 2025-06-26 10:32:57,601 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.13/dorado_2005.027.13_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done.
INFO 2025-06-26 10:32:57,602 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.027.13_cal.nc
INFO 2025-06-26 10:32:57,611 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.13/dorado_2005.027.13_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done.
INFO 2025-06-26 10:32:57,611 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.027.13_align.nc
INFO 2025-06-26 10:32:57,620 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.13/dorado_2005.027.13_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done.
INFO 2025-06-26 10:32:57,626 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.13/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.13 done.
INFO 2025-06-26 10:32:57,632 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.13/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.13 done.
INFO 2025-06-26 10:32:57,636 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.13/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.13 done.
INFO 2025-06-26 10:32:57,641 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.13/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.13 done.
INFO 2025-06-26 10:32:57,648 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.13/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.13 done.
INFO 2025-06-26 10:32:57,652 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.13/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.13 done.
INFO 2025-06-26 10:32:57,657 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.13/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.13 done.
INFO 2025-06-26 10:32:57,661 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.13/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.13 done.
INFO 2025-06-26 10:32:57,667 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.13/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.13 done.
INFO 2025-06-26 10:32:57,668 archive.py copy_to_AUVTCD():116 [1] Archiving product files
INFO 2025-06-26 10:32:57,668 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.13/dorado_2005.027.13_processing.log /Volumes/AUVCTD/surveys/2005/netcdf