INFO 2025-06-26 10:31:48,387 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:31:48,387 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Elkhorn Slough plume racetrack Monterey triangle - ctdToUse = ctd1 INFO 2025-06-26 10:31:48,387 process.py process_mission():449 [1] Processing OCCO mission 2005.021.03 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:31:48,387 process.py download_process():165 [1] Download and processing steps for 2005.021.03 INFO 2025-06-26 10:31:48,387 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005021/2005.021.03 INFO 2025-06-26 10:31:48,387 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005021/2005.021.03 to /data/auv_data/dorado/missionlogs/2005.021.03 INFO 2025-06-26 10:31:48,710 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.021.03 INFO 2025-06-26 10:31:48,711 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.03/ctdDriver.log (2913811 bytes) INFO 2025-06-26 10:31:48,938 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.03/ctdDriver2.log (2917325 bytes) INFO 2025-06-26 10:31:49,154 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.03/gps.log (36068 bytes) INFO 2025-06-26 10:31:49,166 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.03/hydroscatlog.log (1989494 bytes) INFO 2025-06-26 10:31:49,405 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.03/navigation.log (9763918 bytes) INFO 2025-06-26 10:31:50,135 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.03/isuslog.log (34261 bytes) INFO 2025-06-26 10:31:50,143 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.03/parosci.log (1956038 bytes) INFO 2025-06-26 10:31:50,310 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.03/tailCone.log (1990747 bytes) INFO 2025-06-26 10:31:50,572 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.03/biolume.log (2259100 bytes) INFO 2025-06-26 10:31:50,794 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:31:50,914 logs2netcdfs.py download_process_logs():807 [1] Time to process: 2.20 seconds WARNING 2025-06-26 10:31:50,915 process.py download_process():196 [1] No lopc.bin file for 2005.021.03 INFO 2025-06-26 10:31:50,915 process.py calibrate():227 [1] Calibration steps for 2005.021.03 INFO 2025-06-26 10:31:51,026 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:31:51,028 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:31:51,719 calibrate.py _nudge_pos():1806 [1] 91: 0.040 -0.0005525 0.0003747 4875 16.25 -5.046 4.274 2005-01-21T20:10:49.061143424 INFO 2025-06-26 10:31:52,188 calibrate.py _nudge_pos():1806 [1] 141: 0.040 -0.0044208 0.0003578 7881 26.28 -24.955 2.523 2005-01-21T20:37:55.059754880 INFO 2025-06-26 10:31:52,688 calibrate.py _nudge_pos():1806 [1] 194: 0.050 -0.0009997 -0.0008771 6580 21.93 -6.764 -7.411 2005-01-21T21:00:43.056040576 INFO 2025-06-26 10:31:53,318 calibrate.py _nudge_pos():1806 [1] 260: 0.060 -0.0006357 0.0004193 4980 16.60 -5.684 4.681 2005-01-21T21:18:25.053288704 INFO 2025-06-26 10:31:53,795 calibrate.py _nudge_pos():1806 [1] 311: 0.040 -0.0043595 0.0004478 7970 26.56 -24.346 3.124 2005-01-21T21:45:49.060666624 INFO 2025-06-26 10:31:54,384 calibrate.py _nudge_pos():1806 [1] 373: 0.060 -0.0000959 -0.0000481 230 0.76 -18.647 -11.682 2005-01-21T21:47:36.053337088 INFO 2025-06-26 10:31:54,561 calibrate.py _nudge_pos():1806 [1] 392: 0.040 -0.0010426 -0.0009464 6545 21.81 -7.092 -8.039 2005-01-21T22:09:43.062430592 INFO 2025-06-26 10:31:55,489 calibrate.py _nudge_pos():1862 [1] 467: - - - 4 0.01 - - INFO 2025-06-26 10:31:55,489 calibrate.py _nudge_pos():1868 [1] Points in final series = 41364 WARNING 2025-06-26 10:31:55,524 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 10:31:55,841 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:31:56,153 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:31:56,396 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:31:56,398 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.021.03/ctd1.nc INFO 2025-06-26 10:31:56,399 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:31:56,399 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:31:56,399 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:31:56,696 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 8 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:31:56,944 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 8 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:31:56,946 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.021.03/ctd2.nc INFO 2025-06-26 10:31:56,947 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:31:56,947 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:31:56,947 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:31:56,961 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:31:57,311 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 3600 5760 496020] INFO 2025-06-26 10:31:57,383 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: 0 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:31:57,388 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:31:57,389 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.021.03 ERROR 2025-06-26 10:31:57,389 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.021.03 INFO 2025-06-26 10:31:57,423 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.021.03/dorado_2005.021.03_cal.nc INFO 2025-06-26 10:31:57,484 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:31:57,489 process.py align():251 [1] Alignment steps for 2005.021.03 INFO 2025-06-26 10:31:57,517 align.py process_cal():139 [1] Processing dorado_2005.021.03_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.021.03 INFO 2025-06-26 10:31:57,532 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:31:57,535 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:31:57,570 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:31:57,573 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:31:57,609 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:31:57,611 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:31:57,632 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:31:57,632 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:31:57,646 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:31:57,648 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:31:57,683 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.021.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:31:57,686 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:57,717 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.021.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:31:57,720 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:57,751 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.021.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:31:57,754 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:57,786 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:57,790 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:57,821 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:57,824 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:57,856 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:57,859 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:57,890 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:57,893 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:57,924 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:57,927 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:57,959 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:57,961 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:57,993 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:57,996 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:58,029 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:58,032 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:58,064 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:58,066 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:58,098 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:58,101 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:58,133 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.021.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:58,136 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:58,168 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.021.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:58,171 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:58,203 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.021.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:58,206 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:58,239 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.021.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:58,242 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:58,274 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.021.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:58,277 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:58,309 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.021.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:58,312 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:58,344 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.021.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:58,346 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:58,382 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:31:58,405 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:31:58,428 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:31:58,453 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:31:58,481 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:31:58,508 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.021.03/dorado_2005.021.03_align.nc INFO 2025-06-26 10:31:58,567 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:31:58,570 process.py resample():273 [1] Resampling steps for 2005.021.03 INFO 2025-06-26 10:31:58,570 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:31:58,595 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.021.03/dorado_2005.021.03_align.nc mission netCDF file INFO 2025-06-26 10:31:58,600 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.021.03/dorado_2005.021.03_align.nc mission netCDF file INFO 2025-06-26 10:31:58,601 resample.py get_mission_start_end():1145 [1] navigation: 2005-01-21T19:53:26.472565376 to 2005-01-21T22:11:19.855799936 (0 days 00:00:00.039997312 before mission_end) INFO 2025-06-26 10:31:58,603 resample.py get_mission_start_end():1145 [1] hs2 : 2005-01-21T19:53:10.533657344 to 2005-01-21T22:11:19.895797248 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:31:58,604 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-01-21T19:53:24.212720384 to 2005-01-21T22:11:19.795804032 (0 days 00:00:00.099993216 before mission_end) INFO 2025-06-26 10:31:58,606 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-01-21T19:53:14.203406080 to 2005-01-21T22:11:19.795804032 (0 days 00:00:00.099993216 before mission_end) INFO 2025-06-26 10:31:58,607 resample.py get_mission_start_end():1145 [1] isus : 2005-01-21T19:54:29.518246656 to 2005-01-21T22:11:17.505960960 (0 days 00:00:02.389836288 before mission_end) INFO 2025-06-26 10:31:58,609 resample.py get_mission_start_end():1145 [1] biolume : 2005-01-21T19:53:05.463970432 to 2005-01-21T22:11:18.745841792 (0 days 00:00:01.149955456 before mission_end) INFO 2025-06-26 10:31:58,610 resample.py get_mission_start_end():1145 [1] tailcone : 2005-01-21T19:53:06.433938304 to 2005-01-21T22:11:19.855799936 (0 days 00:00:00.039997312 before mission_end) INFO 2025-06-26 10:31:58,611 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.021.03/dorado_2005.021.03_align.nc mission netCDF file INFO 2025-06-26 10:31:58,611 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:58,719 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:58,760 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:58,781 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:58,801 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:58,820 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:58,839 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:58,858 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:58,876 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:58,893 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:58,910 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:58,926 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:58,944 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:58,960 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:58,977 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:58,993 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:59,011 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:59,031 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:59,049 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:59,067 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:59,084 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:59,102 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:59,120 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:59,130 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:59,139 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:59,148 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:59,159 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:59,179 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:59,319 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.021.03/dorado_2005.021.03_1S.nc INFO 2025-06-26 10:32:00,093 create_products.py gulper_odv():401 [1] No gulper times found for 2005.021.03 INFO 2025-06-26 10:32:00,094 process.py archive():337 [1] Archiving steps for 2005.021.03 INFO 2025-06-26 10:32:00,094 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.021.03/dorado_2005.021.03, BASE_PATH = /data/auv_data INFO 2025-06-26 10:32:00,094 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.021.03/dorado_2005.021.03 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:32:00,095 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.021.03_1S.nc INFO 2025-06-26 10:32:00,108 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.03/dorado_2005.021.03_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:32:00,109 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.021.03_cal.nc INFO 2025-06-26 10:32:00,145 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.03/dorado_2005.021.03_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:32:00,146 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.021.03_align.nc INFO 2025-06-26 10:32:00,184 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.03/dorado_2005.021.03_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:32:00,197 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.03/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.03 done. INFO 2025-06-26 10:32:00,209 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.03/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.03 done. INFO 2025-06-26 10:32:00,213 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.03 done. INFO 2025-06-26 10:32:00,223 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.03/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.03 done. INFO 2025-06-26 10:32:00,252 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.03 done. INFO 2025-06-26 10:32:00,256 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.03/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.03 done. INFO 2025-06-26 10:32:00,266 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.03 done. INFO 2025-06-26 10:32:00,278 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.03/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.03 done. INFO 2025-06-26 10:32:00,305 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.03/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.03 done. INFO 2025-06-26 10:32:00,305 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:32:00,306 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.03/dorado_2005.021.03_processing.log /Volumes/AUVCTD/surveys/2005/netcdf