Execution of AUVprocess_main version 1.85 at 2014-03-17T13:12:33Z on elvis
Matlab command executed: 
   AUVprocess_main('AUVCTD', 2005, ['096.07';'096.08'], 'ssds.shore.mbari.org', 0, 'ssdsLoads-new-ssds.jar', 0, '/mbari/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/', [], 'ctd1')
 
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Processing data from SSDS via DODS server
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Processing AUV mission: 2005.096.07
Data path is http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/
Calibration path is http://ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/
Processing results path (data and metadata) is /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
Processing DVL navigation data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/navigation.nc')
Creating vector time with 8912 elements.
Creating vector mPos_x with 8912 elements.
Creating vector time with 8912 elements.
Creating vector mPos_y with 8912 elements.
Creating vector time with 8912 elements.
Creating vector mDepth with 8912 elements.
Creating vector time with 8912 elements.
Creating vector mGpsNorth with 8912 elements.
Creating vector time with 8912 elements.
Creating vector mGpsEast with 8912 elements.
Creating vector time with 8912 elements.
Creating vector mGpsValid with 8912 elements.
Creating vector time with 8912 elements.
Creating vector mPhi with 8912 elements.
Creating vector time with 8912 elements.
Creating vector mTheta with 8912 elements.
Creating vector time with 8912 elements.
Creating vector mPsi with 8912 elements.
Creating vector time with 8912 elements.
Creating vector mOmega_x with 8912 elements.
Creating vector time with 8912 elements.
Creating vector mOmega_y with 8912 elements.
Creating vector time with 8912 elements.
Creating vector mOmega_z with 8912 elements.
Creating vector time with 8912 elements.
Creating vector mPsaRange with 8912 elements.
Creating vector time with 8912 elements.
Creating vector mAltitude with 8912 elements.
Creating vector time with 8912 elements.
Creating vector mDvlAltitude with 8912 elements.
Creating vector time with 8912 elements.
Creating vector mWaterSpeed with 8912 elements.
Creating vector time with 8912 elements.
Creating vector mDvlValid with 8912 elements.
Creating vector time with 8912 elements.
Creating vector mDvlNewData with 8912 elements.
Creating vector time with 8912 elements.
Creating vector mDeltaT with 8912 elements.
Creating vector time with 8912 elements.
Creating vector nfix with 8912 elements.
Creating vector time with 8912 elements.
Creating vector efix with 8912 elements.
Creating vector time with 8912 elements.
Creating vector filter_north with 8912 elements.
Creating vector time with 8912 elements.
Creating vector filter_east with 8912 elements.
Creating vector time with 8912 elements.
Creating vector filter_depth with 8912 elements.
Creating vector time with 8912 elements.
Creating vector north_current with 8912 elements.
Creating vector time with 8912 elements.
Creating vector east_current with 8912 elements.
Creating vector time with 8912 elements.
Creating vector speed_bias with 8912 elements.
Creating vector time with 8912 elements.
Creating vector heading_bias with 8912 elements.
Creating vector time with 8912 elements.
Creating vector latitude with 8912 elements.
Creating vector time with 8912 elements.
Creating vector longitude with 8912 elements.
Creating vector time with 8912 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/navigation.nc');
processNav(): median of positive valued depths = 101.9352
processNav(): Finding depths less than 509.676 and times > 0
processNav(): length(Nav.depth) = 8912
processNav(): length(gindx)     = 8912
 
Processing GPS navigation data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/gps.nc')
Creating vector time with 211 elements.
Creating vector hours with 211 elements.
Creating vector time with 211 elements.
Creating vector minutes with 211 elements.
Creating vector time with 211 elements.
Creating vector seconds with 211 elements.
Creating vector time with 211 elements.
Creating vector centiSeconds with 211 elements.
Creating vector time with 211 elements.
Creating vector latitude with 211 elements.
Creating vector time with 211 elements.
Creating vector longitude with 211 elements.
Creating vector time with 211 elements.
Creating vector quality with 211 elements.
Creating vector time with 211 elements.
Creating vector numberOfSatellites with 211 elements.
Creating vector time with 211 elements.
Creating vector hdop with 211 elements.
Creating vector time with 211 elements.
Creating vector antennaHeight with 211 elements.
Creating vector time with 211 elements.
Creating vector geoHeight with 211 elements.
Creating vector time with 211 elements.
Creating vector dgpsDataAge with 211 elements.
Creating vector time with 211 elements.
Creating vector dgpsRSID with 211 elements.
Creating vector time with 211 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/gps.nc');
 
Processing depth data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/parosci.nc')
Creating vector time with 8652 elements.
Creating vector depth with 8652 elements.
Creating vector time with 8652 elements.
Creating vector temp with 8652 elements.
Creating vector time with 8652 elements.
Creating vector pressure with 8652 elements.
Creating vector time with 8652 elements.
Creating vector temp_period with 8652 elements.
Creating vector time with 8652 elements.
Creating vector pres_period with 8652 elements.
Creating vector time with 8652 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/parosci.nc');
in processDepth.m
Before: min(Depth.data) = -0.37301 max(Depth.data) = 250.3074
Found 857 bad (> 300 | < 0) depth values in Depth.data.  Replacing with NaNs
After: min(Depth.data) = 0.0007866 max(Depth.data) = 250.3074
 
Processing hs2 backscattering and chlorophyll fluorescence data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/hydroscatlog.nc')
Creating vector time with 7193 elements.
Creating vector Seconds with 7193 elements.
Creating vector time with 7193 elements.
Creating vector HundrethsOfSeconds with 7193 elements.
Creating vector time with 7193 elements.
Creating vector Snorm1 with 7193 elements.
Creating vector time with 7193 elements.
Creating vector Snorm2 with 7193 elements.
Creating vector time with 7193 elements.
Creating vector Snorm3 with 7193 elements.
Creating vector time with 7193 elements.
Creating vector Gain_Status_1 with 7193 elements.
Creating vector time with 7193 elements.
Creating vector Gain_Status_2 with 7193 elements.
Creating vector time with 7193 elements.
Creating vector Gain_Status_3 with 7193 elements.
Creating vector time with 7193 elements.
Creating vector RawDepthValue with 7193 elements.
Creating vector time with 7193 elements.
Creating vector RawTempValue with 7193 elements.
Creating vector time with 7193 elements.
Creating vector Temperature with 7193 elements.
Creating vector time with 7193 elements.
Creating vector ErrorValue with 7193 elements.
Creating vector time with 7193 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/hydroscatlog.nc');
 
Processing CTD #1 data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/ctdDriver.nc')
Creating vector time with 7136 elements.
Creating vector conductivity with 7136 elements.
Creating vector time with 7136 elements.
Creating vector temperature with 7136 elements.
Creating vector time with 7136 elements.
Creating vector cond_frequency with 7136 elements.
Creating vector time with 7136 elements.
Creating vector temp_frequency with 7136 elements.
Creating vector time with 7136 elements.
Creating vector spare with 7136 elements.
Creating vector time with 7136 elements.
Creating vector humidity with 7136 elements.
Creating vector time with 7136 elements.
Creating vector flow1 with 7136 elements.
Creating vector time with 7136 elements.
Creating vector OBS with 7136 elements.
Creating vector time with 7136 elements.
Creating vector dissolvedO2 with 7136 elements.
Creating vector time with 7136 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/ctdDriver.nc');
Obtaining calibration from http://ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/ctdDriver.cfg
Oxygen calibration loaded from CTD config file (current method)
Using constant flow rate offset for oxygen...
 
Processing CTD #2 data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/ctdDriver2.nc')
Creating vector time with 7178 elements.
Creating vector conductivity with 7178 elements.
Creating vector time with 7178 elements.
Creating vector temperature with 7178 elements.
Creating vector time with 7178 elements.
Creating vector cond_frequency with 7178 elements.
Creating vector time with 7178 elements.
Creating vector temp_frequency with 7178 elements.
Creating vector time with 7178 elements.
Creating vector flow2 with 7178 elements.
Creating vector time with 7178 elements.
Creating vector spare with 7178 elements.
Creating vector time with 7178 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/ctdDriver2.nc');
Obtaining calibration from http://ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/ctdDriver2.cfg
 
Processing ISUS data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/isuslog.nc')
Creating vector time with 1081 elements.
Creating vector isusNitrate with 1081 elements.
Creating vector time with 1081 elements.
Creating vector isusTemp with 1081 elements.
Creating vector time with 1081 elements.
Creating vector isusQuality with 1081 elements.
Creating vector time with 1081 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/isuslog.nc');
Total lag applied to nitrate = 6 seconds
 
Processing Biolume data...
{Warning: "/mbari/matlab/toolbox/matlab/demos" not found in path.} 
{> In rmpath at 58
  In processBiolume at 21
  In processAUVmission at 220
  In AUVprocess_main at 220} 
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/biolume.nc')
Error: Error while reading the URL: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/biolume.nc.dods?.
The OPeNDAP server returned the following message:
Not Found: The data source or server could not be found.
        Often this means that the OPeNDAP server is missing or needs attention;
        Please contact the server administrator.


att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/biolume.nc');
Error: Error while reading the URL: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/biolume.nc.das.
The OPeNDAP server returned the following message:
Not Found: The data source or server could not be found.
        Often this means that the OPeNDAP server is missing or needs attention;
        Please contact the server administrator.


Could not read from biolume.nc returning NaNs for fields.
 
Processing LOPC plankton data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/lopc.nc')
Error: Error while reading the URL: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/lopc.nc.dods?.
The OPeNDAP server returned the following message:
Not Found: The data source or server could not be found.
        Often this means that the OPeNDAP server is missing or needs attention;
        Please contact the server administrator.


att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/lopc.nc');
Error: Error while reading the URL: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/lopc.nc.das.
The OPeNDAP server returned the following message:
Not Found: The data source or server could not be found.
        Often this means that the OPeNDAP server is missing or needs attention;
        Please contact the server administrator.


*** Setting lopc structure to NaNs. *** 
 
save /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005.096.07.mat BL CTD1 CTD2 hs2 ISUS Nav gps lopc
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Processing AUV mission: 2005.096.08
Data path is http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/
Calibration path is http://ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/
Processing results path (data and metadata) is /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
Processing DVL navigation data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/navigation.nc')
Creating vector time with 80114 elements.
Creating vector mPos_x with 80114 elements.
Creating vector time with 80114 elements.
Creating vector mPos_y with 80114 elements.
Creating vector time with 80114 elements.
Creating vector mDepth with 80114 elements.
Creating vector time with 80114 elements.
Creating vector mGpsNorth with 80114 elements.
Creating vector time with 80114 elements.
Creating vector mGpsEast with 80114 elements.
Creating vector time with 80114 elements.
Creating vector mGpsValid with 80114 elements.
Creating vector time with 80114 elements.
Creating vector mPhi with 80114 elements.
Creating vector time with 80114 elements.
Creating vector mTheta with 80114 elements.
Creating vector time with 80114 elements.
Creating vector mPsi with 80114 elements.
Creating vector time with 80114 elements.
Creating vector mOmega_x with 80114 elements.
Creating vector time with 80114 elements.
Creating vector mOmega_y with 80114 elements.
Creating vector time with 80114 elements.
Creating vector mOmega_z with 80114 elements.
Creating vector time with 80114 elements.
Creating vector mPsaRange with 80114 elements.
Creating vector time with 80114 elements.
Creating vector mAltitude with 80114 elements.
Creating vector time with 80114 elements.
Creating vector mDvlAltitude with 80114 elements.
Creating vector time with 80114 elements.
Creating vector mWaterSpeed with 80114 elements.
Creating vector time with 80114 elements.
Creating vector mDvlValid with 80114 elements.
Creating vector time with 80114 elements.
Creating vector mDvlNewData with 80114 elements.
Creating vector time with 80114 elements.
Creating vector mDeltaT with 80114 elements.
Creating vector time with 80114 elements.
Creating vector nfix with 80114 elements.
Creating vector time with 80114 elements.
Creating vector efix with 80114 elements.
Creating vector time with 80114 elements.
Creating vector filter_north with 80114 elements.
Creating vector time with 80114 elements.
Creating vector filter_east with 80114 elements.
Creating vector time with 80114 elements.
Creating vector filter_depth with 80114 elements.
Creating vector time with 80114 elements.
Creating vector north_current with 80114 elements.
Creating vector time with 80114 elements.
Creating vector east_current with 80114 elements.
Creating vector time with 80114 elements.
Creating vector speed_bias with 80114 elements.
Creating vector time with 80114 elements.
Creating vector heading_bias with 80114 elements.
Creating vector time with 80114 elements.
Creating vector latitude with 80114 elements.
Creating vector time with 80114 elements.
Creating vector longitude with 80114 elements.
Creating vector time with 80114 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/navigation.nc');
processNav(): median of positive valued depths = 93.6199
processNav(): Finding depths less than 468.0993 and times > 0
processNav(): length(Nav.depth) = 80114
processNav(): length(gindx)     = 80114
 
Processing GPS navigation data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/gps.nc')
Creating vector time with 596 elements.
Creating vector hours with 596 elements.
Creating vector time with 596 elements.
Creating vector minutes with 596 elements.
Creating vector time with 596 elements.
Creating vector seconds with 596 elements.
Creating vector time with 596 elements.
Creating vector centiSeconds with 596 elements.
Creating vector time with 596 elements.
Creating vector latitude with 596 elements.
Creating vector time with 596 elements.
Creating vector longitude with 596 elements.
Creating vector time with 596 elements.
Creating vector quality with 596 elements.
Creating vector time with 596 elements.
Creating vector numberOfSatellites with 596 elements.
Creating vector time with 596 elements.
Creating vector hdop with 596 elements.
Creating vector time with 596 elements.
Creating vector antennaHeight with 596 elements.
Creating vector time with 596 elements.
Creating vector geoHeight with 596 elements.
Creating vector time with 596 elements.
Creating vector dgpsDataAge with 596 elements.
Creating vector time with 596 elements.
Creating vector dgpsRSID with 596 elements.
Creating vector time with 596 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/gps.nc');
 
Processing depth data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/parosci.nc')
Creating vector time with 78269 elements.
Creating vector depth with 78269 elements.
Creating vector time with 78269 elements.
Creating vector temp with 78269 elements.
Creating vector time with 78269 elements.
Creating vector pressure with 78269 elements.
Creating vector time with 78269 elements.
Creating vector temp_period with 78269 elements.
Creating vector time with 78269 elements.
Creating vector pres_period with 78269 elements.
Creating vector time with 78269 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/parosci.nc');
in processDepth.m
Before: min(Depth.data) = -0.4815 max(Depth.data) = 250.7042
Found 2875 bad (> 300 | < 0) depth values in Depth.data.  Replacing with NaNs
After: min(Depth.data) = 0.00080529 max(Depth.data) = 250.7042
 
Processing hs2 backscattering and chlorophyll fluorescence data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/hydroscatlog.nc')
Creating vector time with 64130 elements.
Creating vector Seconds with 64130 elements.
Creating vector time with 64130 elements.
Creating vector HundrethsOfSeconds with 64130 elements.
Creating vector time with 64130 elements.
Creating vector Snorm1 with 64130 elements.
Creating vector time with 64130 elements.
Creating vector Snorm2 with 64130 elements.
Creating vector time with 64130 elements.
Creating vector Snorm3 with 64130 elements.
Creating vector time with 64130 elements.
Creating vector Gain_Status_1 with 64130 elements.
Creating vector time with 64130 elements.
Creating vector Gain_Status_2 with 64130 elements.
Creating vector time with 64130 elements.
Creating vector Gain_Status_3 with 64130 elements.
Creating vector time with 64130 elements.
Creating vector RawDepthValue with 64130 elements.
Creating vector time with 64130 elements.
Creating vector RawTempValue with 64130 elements.
Creating vector time with 64130 elements.
Creating vector Temperature with 64130 elements.
Creating vector time with 64130 elements.
Creating vector ErrorValue with 64130 elements.
Creating vector time with 64130 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/hydroscatlog.nc');
 
Processing CTD #1 data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/ctdDriver.nc')
Creating vector time with 64067 elements.
Creating vector conductivity with 64067 elements.
Creating vector time with 64067 elements.
Creating vector temperature with 64067 elements.
Creating vector time with 64067 elements.
Creating vector cond_frequency with 64067 elements.
Creating vector time with 64067 elements.
Creating vector temp_frequency with 64067 elements.
Creating vector time with 64067 elements.
Creating vector spare with 64067 elements.
Creating vector time with 64067 elements.
Creating vector humidity with 64067 elements.
Creating vector time with 64067 elements.
Creating vector flow1 with 64067 elements.
Creating vector time with 64067 elements.
Creating vector OBS with 64067 elements.
Creating vector time with 64067 elements.
Creating vector dissolvedO2 with 64067 elements.
Creating vector time with 64067 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/ctdDriver.nc');
Obtaining calibration from http://ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/ctdDriver.cfg
Oxygen calibration loaded from CTD config file (current method)
Using constant flow rate offset for oxygen...
 
Processing CTD #2 data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/ctdDriver2.nc')
Creating vector time with 64108 elements.
Creating vector conductivity with 64108 elements.
Creating vector time with 64108 elements.
Creating vector temperature with 64108 elements.
Creating vector time with 64108 elements.
Creating vector cond_frequency with 64108 elements.
Creating vector time with 64108 elements.
Creating vector temp_frequency with 64108 elements.
Creating vector time with 64108 elements.
Creating vector flow2 with 64108 elements.
Creating vector time with 64108 elements.
Creating vector spare with 64108 elements.
Creating vector time with 64108 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/ctdDriver2.nc');
Obtaining calibration from http://ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/ctdDriver2.cfg
 
Processing ISUS data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/isuslog.nc')
Creating vector time with 9988 elements.
Creating vector isusNitrate with 9988 elements.
Creating vector time with 9988 elements.
Creating vector isusTemp with 9988 elements.
Creating vector time with 9988 elements.
Creating vector isusQuality with 9988 elements.
Creating vector time with 9988 elements.
att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/isuslog.nc');
Total lag applied to nitrate = 6 seconds
 
Processing Biolume data...
{Warning: "/mbari/matlab/toolbox/matlab/demos" not found in path.} 
{> In rmpath at 58
  In processBiolume at 21
  In processAUVmission at 220
  In AUVprocess_main at 220} 
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/biolume.nc')
Error: Error while reading the URL: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/biolume.nc.dods?.
The OPeNDAP server returned the following message:
Not Found: The data source or server could not be found.
        Often this means that the OPeNDAP server is missing or needs attention;
        Please contact the server administrator.


att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/biolume.nc');
Error: Error while reading the URL: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/biolume.nc.das.
The OPeNDAP server returned the following message:
Not Found: The data source or server could not be found.
        Often this means that the OPeNDAP server is missing or needs attention;
        Please contact the server administrator.


Could not read from biolume.nc returning NaNs for fields.
 
Processing LOPC plankton data...
loaddap('http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/lopc.nc')
Error: Error while reading the URL: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/lopc.nc.dods?.
The OPeNDAP server returned the following message:
Not Found: The data source or server could not be found.
        Often this means that the OPeNDAP server is missing or needs attention;
        Please contact the server administrator.


att = loaddap('-A', 'http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/lopc.nc');
Error: Error while reading the URL: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/lopc.nc.das.
The OPeNDAP server returned the following message:
Not Found: The data source or server could not be found.
        Often this means that the OPeNDAP server is missing or needs attention;
        Please contact the server administrator.


*** Setting lopc structure to NaNs. *** 
 
save /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005.096.08.mat BL CTD1 CTD2 hs2 ISUS Nav gps lopc
*************************************************************************
 
 
*************************************************************************
Calling build_auv_survey.m to construct survey file...

SecondaryDissolvedO2 =

     []

Reading: /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005.096.07.mat
Reading: /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005.096.08.mat
Calling matchDVLtoGPS to adjust dvl data in the underwater segments...
setting up UTM transformation using M_Map calls...
Looping over 10 segments.
Current plot held
Printing navigation adjust plot to /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08_nav_adjust.png
Saving survey data to /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08.mat
Done saving to /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08.mat
 
 
*************************************************************************
Calling plot_sections from ../viz to produce section plots ...
Using median boxcar filter of vector...
Using mean boxcar filter of vector...
Number of profiles found = 44 Gridding with nix = 132, iZ = 498
Using mean boxcar filter of vector...
Using mean boxcar filter of vector...
Using max boxcar filter of vector...
Using max boxcar filter of vector...
Using max boxcar filter of vector...
Gridding...
   T
   S
   O
Using median boxcar filter of vector...
Using median boxcar filter of vector...
Using median boxcar filter of vector...
   bbp470
   bbp676
   fl676_uncorr
   N
   BL
Only one good point or fewer - NaNing the gBL array.
   BLflow
Only one good point or fewer - NaNing the gBLflow array.
   LOPC
Only one good point or fewer - NaNing the gLOPCcount array.
                             - NaNing the gLOPCtransCount array.
                             - NaNing the gLOPCnonTransCount array.
                             - NaNing the gLOPCLCcount array.
 
Masking and filtering with median filter of size 5...
  cvarname = gT
  cvarname = gS
  cvarname = gO
  cvarname = gN
  cvarname = gF
  cvarname = gB470
  cvarname = gB676
  cvarname = gBL
No valid data for gBL
  cvarname = gBLflow
No valid data for gBLflow
  cvarname = gLOPCcount
No valid data for gLOPCcount
  cvarname = gLOPCtransCount
No valid data for gLOPCtransCount
  cvarname = gLOPCnonTransCount
No valid data for gLOPCnonTransCount
  cvarname = gLOPCLCcount
No valid data for gLOPCLCcount
Encountered 0 NaN values in array of lon that is 88910 elements long
! grdtrack -V ~/tmp/grdTrk.txt -GMonterey25.grd -bos >! ~/tmp/grdTrk.bath
GMT_grd_is_global: no!
GMT_grd_is_global: no!
GMT_boundcond_param_prep determined edgeinfo: gn = 0, gs = 0, nxp = 0, nyp = 0
grdtrack: Sampled 88910 points from grid Monterey25.grd (2876 x 2447)
Executing: /bin/rm -f ../results/2005096_GulperTimes.txt && touch ../results/2005096_GulperTimes.txt
Getting mission start epoch seconds from: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.07/navigation.nc.ascii?time[0:1:0]
Executing: perl parseGulper.pl -syslogFile /mbari/AUVCTD/missionlogs/2005/2005096/2005.096.07/syslog -startEsecs 1112808152.1899 -surveyName Dorado389_2005_096_07_096_08 >> ../results/2005096_GulperTimes.txt
Executing: perl removeGulpDups.pl ../results/2005096_GulperTimes.txt
Getting mission start epoch seconds from: http://dods.mbari.org/cgi-bin/nph-nc/data/ssdsdata/ssds/generated/netcdf/files/ssds.shore.mbari.org/auvctd/missionlogs/2005/2005096/2005.096.08/navigation.nc.ascii?time[0:1:0]
Executing: perl parseGulper.pl -syslogFile /mbari/AUVCTD/missionlogs/2005/2005096/2005.096.08/syslog -startEsecs 1112810780.7398 -surveyName Dorado389_2005_096_07_096_08 >> ../results/2005096_GulperTimes.txt
Executing: perl removeGulpDups.pl ../results/2005096_GulperTimes.txt
Saving gridded, filtered data to /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08_gridded.mat

outvarstr =

gF gT gN gS gD gO gB470 gB676 gBL gBLflow gLOPCcount gLOPCtransCount gLOPCnonTransCount gLOPCLCcount idist iZ auvnav distnav ilat ilon profDist profZ dists depths fixLonSubIntrp fixLatSubIntrp GulperLocations bmask bdist bdepth fbdist fbdepth 

2Column contouring gridded variable gD
2Column contouring gridded variable gT
2Column contouring gridded variable gS
2Column contouring gridded variable gN
2Column contouring gridded variable gO
2Column contouring gridded variable gB470
2Column contouring gridded variable gB676
2Column contouring gridded variable gF
2Column contouring gridded variable gBL
Printing two column section summary to /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08_2column.png
Elapsed time to save image: 2 seconds
Biolume contouring gridded variable gD
Biolume contouring gridded variable gT
Biolume contouring gridded variable gS
Biolume contouring gridded variable gN
Biolume contouring gridded variable gO
Biolume contouring gridded variable gB470
Biolume contouring gridded variable gB676
Biolume contouring gridded variable gF
Biolume contouring gridded variable gBL
Printing biolume section summary to /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08_biolume.png
Elapsed time to save image: 15 seconds
2Column contouring gridded variable gLOPCcount
2Column contouring gridded variable gLOPCtransCount
2Column contouring gridded variable gLOPCnonTransCount
2Column contouring gridded variable gLOPCLCcount
2Column contouring gridded variable gT
2Column contouring gridded variable gB470
2Column contouring gridded variable gB676
2Column contouring gridded variable gF
2Column contouring gridded variable gBL
Printing two column section summary to /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08_lopc.png
Elapsed time to save image: 1 seconds
 
 
*************************************************************************
Calling plot_survey_stats to produce histogram and profile statistics plots...
{Warning: Imaginary parts of complex X and/or Y arguments ignored} 
{> In specgraph/private/barV6 at 45
  In bar at 47
  In hist at 118
  In plot_survey_stats at 48
  In create_data_products at 128
  In build_auv_survey at 497
  In AUVprocess_main at 250} 
Printing section summary to /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08_hist_stats.png
{Warning: Imaginary parts of complex X and/or Y arguments ignored} 
{> In plot_survey_stats at 124
  In create_data_products at 128
  In build_auv_survey at 497
  In AUVprocess_main at 250} 
Printing section summary to /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08_prof_stats.png
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08_2column.png...
Copied to /mbari/AUVCTD/surveys/2005/images/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08_biolume.png...
Copied to /mbari/AUVCTD/surveys/2005/images/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08_lopc.png...
Copied to /mbari/AUVCTD/surveys/2005/images/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08_nav_adjust.png...
Copied to /mbari/AUVCTD/surveys/2005/images/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08_hist_stats.png...
Copied to /mbari/AUVCTD/surveys/2005/images/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08_prof_stats.png...
Copied to /mbari/AUVCTD/surveys/2005/images/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
 
*************************************************************************
Writing KML files ...
KML = write_kml(survey_shrt_filename_base, 'Temperature', jetplus, varlimits(1,:), ctd1.T, time.ctd1, auvnav, depth.ctd1, resultspath);
  adding: u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2005_096_07_096_08_Temperature.kml (deflated 93%)
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2005_096_07_096_08_Temperature.kmz...
Copied to /mbari/AUVCTD/surveys/2005/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'Salinity', jetplus, varlimits(2,:), ctd1.S, time.ctd1, auvnav, depth.ctd1, resultspath);
  adding: u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2005_096_07_096_08_Salinity.kml (deflated 93%)
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2005_096_07_096_08_Salinity.kmz...
Copied to /mbari/AUVCTD/surveys/2005/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'Nitrate', jetplus, varlimits(3,:), isus.nitrate, time.isus, auvnav, depth.isus, resultspath);
  adding: u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2005_096_07_096_08_Nitrate.kml (deflated 93%)
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2005_096_07_096_08_Nitrate.kmz...
Copied to /mbari/AUVCTD/surveys/2005/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'Oxygen', jetplus, varlimits(4,:), ctd1.O2, time.ctd1, auvnav, depth.ctd1, resultspath);
  adding: u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2005_096_07_096_08_Oxygen.kml (deflated 93%)
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2005_096_07_096_08_Oxygen.kmz...
Copied to /mbari/AUVCTD/surveys/2005/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'Optical Backscatter @470 nm', jetplus, varlimits(5,:), hs2.bbp470, time.hs2, auvnav, depth.hs2, resultspath);
  adding: u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2005_096_07_096_08_Optical_Backscatter_470_nm.kml (deflated 93%)
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2005_096_07_096_08_Optical_Backscatter_470_nm.kmz...
Copied to /mbari/AUVCTD/surveys/2005/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'Optical Backscatter @676 nm', jetplus, varlimits(6,:), hs2.bbp676, time.hs2, auvnav, depth.hs2, resultspath);
  adding: u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2005_096_07_096_08_Optical_Backscatter_676_nm.kml (deflated 93%)
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2005_096_07_096_08_Optical_Backscatter_676_nm.kmz...
Copied to /mbari/AUVCTD/surveys/2005/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'Chlorophyll Fluorescence', jetplus, varlimits(7,:), hs2.fl676_uncorr, time.hs2, auvnav, depth.hs2, resultspath);
  adding: u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2005_096_07_096_08_Chlorophyll_Fluorescence.kml (deflated 93%)
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2005_096_07_096_08_Chlorophyll_Fluorescence.kmz...
Copied to /mbari/AUVCTD/surveys/2005/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'Bioluminescence', jetplus, varlimits(8,:), biolume.biolume, time.biolume, auvnav, depth.biolume, resultspath);
length(v_esecs(gindx)) =   which is less than 2.  Not processing.
  adding: u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2005_096_07_096_08_Bioluminescence.kml (deflated 94%)
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2005_096_07_096_08_Bioluminescence.kmz...
Copied to /mbari/AUVCTD/surveys/2005/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
KML = write_kml(survey_shrt_filename_base, 'LOPC Total Count', jetplus, varlimits(9,:), lopc.countSum, time.lopc, auvnav, depth.lopc, resultspath);
length(v_esecs(gindx)) =   which is less than 2.  Not processing.
  adding: u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2005_096_07_096_08_LOPC_Total_Count.kml (deflated 94%)
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2005_096_07_096_08_LOPC_Total_Count.kmz...
Copied to /mbari/AUVCTD/surveys/2005/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
Creating Dorado389_2005_096_07_096_08.kml file to hold all the variable .kmz files...
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08.kml...
Copied to /mbari/AUVCTD/surveys/2005/kml/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
{Warning: File
'/u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results//Dorado389_2005_096_07_096_08_LOPC_Total_Count.kml'
not found.} 
{> In create_data_products at 412
  In build_auv_survey at 497
  In AUVprocess_main at 250} 
 
 
*************************************************************************
Writing ODV file ...
Loading survey file /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08.mat ...
Iterpolating to isus time values...
Interpolating ctd1 temperature...
Interpolating ctd1 salinity...
11 NaNs found in bbpRed.  Interpolating anyway.
Encountered 15 NaN values in array of lon that is 11069 elements long
! grdtrack -V ~/tmp/grdTrk.txt -GMonterey25.grd -bos >! ~/tmp/grdTrk.bath
GMT_grd_is_global: no!
GMT_grd_is_global: no!
GMT_boundcond_param_prep determined edgeinfo: gn = 0, gs = 0, nxp = 0, nyp = 0
grdtrack: Sampled 11054 points from grid Monterey25.grd (2876 x 2447)
Number of depths returned from grdtrack = 11054 are not equal to number of Lat lon points = 11069
AUV track probably goes outside of the range of the .grd file being used.   Setting bottom depths to 1000 m
Writing to /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08.txt
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08.txt...
Copied to /mbari/AUVCTD/surveys/2005/odv/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08_Gulper.txt...
Tried, but failed to copy to /mbari/AUVCTD/surveys/2005/odv/
cp: cannot stat `/u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08_Gulper.txt': No such file or directory

 
 
*************************************************************************
Writing decimated netCDF file ...
Iterpolating to isus time values...
Interpolating ctd1 temperature...
Interpolating ctd1 salinity...
11 NaNs found in bbpRed.  Interpolating anyway.
Saving Global Attributes
Saving Variables and attributes
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08_decim.nc...
Copied to /mbari/AUVCTD/surveys/2005/netcdf/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
 
*************************************************************************
Writing netCDF file ...
Saving Global Attributes
Saving Variables and attributes
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08.nc...
Copied to /mbari/AUVCTD/surveys/2005/netcdf/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08_gridded.mat...
Copied to /mbari/AUVCTD/surveys/2005/mat/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
 
*************************************************************************
Copying /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005_096_07_096_08.mat...
Copied to /mbari/AUVCTD/surveys/2005/mat/.  Removing from /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/
 
 
*************************************************************************
Composing email to send to mccann@mbari.org ...
!mail -s "Survey Dorado389_2005_096_07_096_08 processed" mccann@mbari.org < mail_Dorado389_2005_096_07_096_08.txt
Removing mission .mat files:
   /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005.096.07.mat
   /u/ssdsadmin/dev/auv_ctd/src/matlab/doradosdp/results/Dorado389_2005.096.08.mat
Processing time: 143 seconds