INFO 2025-06-26 06:11:03,160 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 06:11:03,160 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Re-portaled 8/22/05 - ctdToUse = ctd1 INFO 2025-06-26 06:11:03,160 process.py process_mission():449 [1] Processing BIOLUME mission 2004.348.00 by user docker_user on host 671049448ece INFO 2025-06-26 06:11:03,160 process.py download_process():165 [1] Download and processing steps for 2004.348.00 INFO 2025-06-26 06:11:03,160 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004348/2004.348.00 INFO 2025-06-26 06:11:03,160 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004348/2004.348.00 to /data/auv_data/dorado/missionlogs/2004.348.00 INFO 2025-06-26 06:11:07,789 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.348.00 INFO 2025-06-26 06:11:07,790 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.348.00/ctdDriver.log (5951747 bytes) INFO 2025-06-26 06:11:08,231 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.348.00/ctdDriver2.log (5928773 bytes) INFO 2025-06-26 06:11:08,697 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.348.00/gps.log (49244 bytes) INFO 2025-06-26 06:11:08,710 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.348.00/hydroscatlog.log (4061954 bytes) INFO 2025-06-26 06:11:09,185 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.348.00/navigation.log (13191835 bytes) INFO 2025-06-26 06:11:10,179 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.348.00/isuslog.log (349717 bytes) INFO 2025-06-26 06:11:10,220 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.348.00/parosci.log (4063766 bytes) INFO 2025-06-26 06:11:10,579 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.348.00/tailCone.log (4063867 bytes) INFO 2025-06-26 06:11:11,085 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.30 seconds WARNING 2025-06-26 06:11:11,086 process.py download_process():196 [1] No lopc.bin file for 2004.348.00 INFO 2025-06-26 06:11:11,086 process.py calibrate():227 [1] Calibration steps for 2004.348.00 INFO 2025-06-26 06:11:11,224 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 06:11:11,226 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 06:11:12,826 calibrate.py _nudge_pos():1806 [1] 184: 0.180 0.0028919 0.0057451 11290 37.63 11.413 28.290 2004-12-13T17:24:56.583315584 INFO 2025-06-26 06:11:13,431 calibrate.py _nudge_pos():1806 [1] 249: 0.180 0.0028542 0.0054508 11380 37.93 11.173 26.629 2004-12-13T18:03:56.583014784 INFO 2025-06-26 06:11:13,860 calibrate.py _nudge_pos():1806 [1] 295: 0.180 0.0036550 0.0038027 11382 37.95 14.301 18.569 2004-12-13T18:42:38.583946752 INFO 2025-06-26 06:11:14,546 calibrate.py _nudge_pos():1806 [1] 366: 0.180 0.0028681 0.0037962 11470 38.23 11.138 18.400 2004-12-13T19:22:02.582001664 INFO 2025-06-26 06:11:15,230 calibrate.py _nudge_pos():1806 [1] 437: 0.190 0.0028830 0.0032799 11320 37.73 11.343 16.108 2004-12-13T20:00:56.582111872 INFO 2025-06-26 06:11:15,922 calibrate.py _nudge_pos():1806 [1] 510: 0.190 0.0026880 0.0026690 11429 38.10 10.473 12.982 2004-12-13T20:40:14.580577792 INFO 2025-06-26 06:11:16,394 calibrate.py _nudge_pos():1806 [1] 560: 0.180 0.0033188 0.0001432 11125 37.08 13.285 0.716 2004-12-13T21:18:08.584797824 INFO 2025-06-26 06:11:17,107 calibrate.py _nudge_pos():1806 [1] 633: 0.190 0.0007197 -0.0002839 1950 6.50 16.444 -8.098 2004-12-13T21:25:50.583148672 INFO 2025-06-26 06:11:17,474 calibrate.py _nudge_pos():1862 [1] 651: - - - 2 0.00 - - INFO 2025-06-26 06:11:17,474 calibrate.py _nudge_pos():1868 [1] Points in final series = 84555 WARNING 2025-06-26 06:11:17,542 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 06:11:18,149 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:11:18,788 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:11:19,291 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:11:19,293 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.348.00/ctd1.nc INFO 2025-06-26 06:11:19,294 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 06:11:19,294 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:11:19,294 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 06:11:19,883 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:11:20,406 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 06:11:20,408 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.348.00/ctd2.nc WARNING 2025-06-26 06:11:20,410 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (652) ctd2_salinity values found outside of range. This may indicate a problem with the ctd2 data. INFO 2025-06-26 06:11:20,410 calibrate.py _range_qc_combined_nc():898 [1] Setting 652 ctd2_salinity values to NaN INFO 2025-06-26 06:11:20,410 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 06:11:20,410 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 06:11:20,424 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.348.00 ERROR 2025-06-26 06:11:20,425 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.348.00 ERROR 2025-06-26 06:11:20,425 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.348.00 INFO 2025-06-26 06:11:20,492 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.348.00/dorado_2004.348.00_cal.nc INFO 2025-06-26 06:11:20,573 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 06:11:20,577 process.py align():251 [1] Alignment steps for 2004.348.00 INFO 2025-06-26 06:11:20,604 align.py process_cal():139 [1] Processing dorado_2004.348.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.348.00 INFO 2025-06-26 06:11:20,629 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:11:20,633 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:11:20,698 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:11:20,703 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:11:20,763 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:11:20,768 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:11:20,804 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 06:11:20,804 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 06:11:20,828 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 06:11:20,832 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:11:20,893 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.348.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:11:20,897 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:20,951 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.348.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:11:20,955 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:21,009 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.348.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 06:11:21,014 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:21,068 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.348.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:21,072 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:21,126 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.348.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:21,130 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:21,183 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.348.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:21,187 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:21,241 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.348.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:21,245 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:21,299 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.348.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:21,302 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:21,357 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.348.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:21,361 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:21,414 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.348.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:21,418 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:21,472 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.348.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:21,476 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:21,529 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.348.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:21,533 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:21,586 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.348.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:21,590 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 06:11:21,644 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.348.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:21,648 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 06:11:21,701 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.348.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:21,705 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 06:11:21,760 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.348.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:21,764 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 06:11:21,820 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.348.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:21,824 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 06:11:21,878 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.348.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:21,882 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 06:11:21,937 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.348.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:21,940 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 06:11:21,995 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.348.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 06:11:21,998 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 06:11:22,058 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 06:11:22,096 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 06:11:22,135 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.65 INFO 2025-06-26 06:11:22,176 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 06:11:22,217 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.348.00/dorado_2004.348.00_align.nc INFO 2025-06-26 06:11:22,292 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 06:11:22,295 process.py resample():273 [1] Resampling steps for 2004.348.00 INFO 2025-06-26 06:11:22,296 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 06:11:22,323 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.348.00/dorado_2004.348.00_align.nc mission netCDF file INFO 2025-06-26 06:11:22,328 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.348.00/dorado_2004.348.00_align.nc mission netCDF file INFO 2025-06-26 06:11:22,329 resample.py get_mission_start_end():1145 [1] navigation: 2004-12-13T16:44:37.389041664 to 2004-12-13T21:26:28.980518400 (0 days 00:00:00 before mission_end) INFO 2025-06-26 06:11:22,330 resample.py get_mission_start_end():1145 [1] hs2 : 2004-12-13T16:44:20.900171264 to 2004-12-13T21:26:28.880525312 (0 days 00:00:00.099993088 before mission_end) INFO 2025-06-26 06:11:22,332 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-12-13T16:44:43.098650752 to 2004-12-13T21:26:28.940521216 (0 days 00:00:00.039997184 before mission_end) INFO 2025-06-26 06:11:22,333 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-12-13T16:44:36.099130112 to 2004-12-13T21:26:28.980518400 (0 days 00:00:00 before mission_end) INFO 2025-06-26 06:11:22,335 resample.py get_mission_start_end():1145 [1] isus : 2004-12-13T16:45:32.555262592 to 2004-12-13T21:26:28.090579328 (0 days 00:00:00.889939072 before mission_end) INFO 2025-06-26 06:11:22,336 resample.py get_mission_start_end():1145 [1] tailcone : 2004-12-13T16:44:16.460475392 to 2004-12-13T21:26:28.860526592 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 06:11:22,337 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.348.00/dorado_2004.348.00_align.nc mission netCDF file INFO 2025-06-26 06:11:22,337 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:22,531 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:22,567 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:22,600 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:22,635 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:22,666 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:22,698 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:22,729 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:22,758 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:22,785 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:22,812 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:22,840 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:22,867 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:22,894 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:22,920 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:22,947 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:22,974 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:23,004 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:23,035 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:23,064 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:23,093 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:23,122 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:23,151 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:23,167 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:23,180 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:23,193 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:23,225 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 06:11:23,418 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.348.00/dorado_2004.348.00_1S.nc INFO 2025-06-26 06:11:25,564 create_products.py gulper_odv():401 [1] No gulper times found for 2004.348.00 INFO 2025-06-26 06:11:25,564 process.py archive():337 [1] Archiving steps for 2004.348.00 INFO 2025-06-26 06:11:25,564 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.348.00/dorado_2004.348.00, BASE_PATH = /data/auv_data INFO 2025-06-26 06:11:25,565 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.348.00/dorado_2004.348.00 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 06:11:25,566 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.348.00_1S.nc INFO 2025-06-26 06:11:25,585 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.348.00/dorado_2004.348.00_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:11:25,586 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.348.00_cal.nc INFO 2025-06-26 06:11:25,665 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.348.00/dorado_2004.348.00_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:11:25,666 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.348.00_align.nc INFO 2025-06-26 06:11:25,739 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.348.00/dorado_2004.348.00_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 06:11:25,764 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.348.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004348/2004.348.00 done. INFO 2025-06-26 06:11:25,785 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.348.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004348/2004.348.00 done. INFO 2025-06-26 06:11:25,790 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.348.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004348/2004.348.00 done. INFO 2025-06-26 06:11:25,807 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.348.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004348/2004.348.00 done. INFO 2025-06-26 06:11:25,848 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.348.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004348/2004.348.00 done. INFO 2025-06-26 06:11:25,857 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.348.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004348/2004.348.00 done. INFO 2025-06-26 06:11:25,875 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.348.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004348/2004.348.00 done. INFO 2025-06-26 06:11:25,897 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.348.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004348/2004.348.00 done. INFO 2025-06-26 06:11:25,897 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 06:11:25,897 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.348.00/dorado_2004.348.00_processing.log /Volumes/AUVCTD/surveys/2004/netcdf