INFO 2025-11-06 15:27:13,406 logs2netcdfs.py download_process_logs():762 [12052] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004272/2004.272.00 INFO 2025-11-06 15:27:13,407 logs2netcdfs.py download_process_logs():791 [12052] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004272/2004.272.00 to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.272.00 INFO 2025-11-06 15:27:21,525 logs2netcdfs.py download_process_logs():802 [12052] Processing mission: dorado 2004.272.00 INFO 2025-11-06 15:27:21,525 logs2netcdfs.py download_process_logs():811 [12052] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.272.00/ctdDriver.log (2223451 bytes) INFO 2025-11-06 15:27:21,623 logs2netcdfs.py download_process_logs():811 [12052] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.272.00/ctdDriver2.log (2223269 bytes) INFO 2025-11-06 15:27:21,720 logs2netcdfs.py download_process_logs():811 [12052] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.272.00/gps.log (175100 bytes) INFO 2025-11-06 15:27:21,739 logs2netcdfs.py download_process_logs():811 [12052] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.272.00/hydroscatlog.log (1519094 bytes) INFO 2025-11-06 15:27:21,844 logs2netcdfs.py download_process_logs():811 [12052] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.272.00/navigation.log (4924927 bytes) INFO 2025-11-06 15:27:22,044 logs2netcdfs.py download_process_logs():811 [12052] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.272.00/isuslog.log (122613 bytes) INFO 2025-11-06 15:27:22,062 logs2netcdfs.py _process_log_file():710 [12052] Non-monotonic increasing time indices in /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.272.00/isuslog.log: [1 2 3 4 5 6] INFO 2025-11-06 15:27:22,063 logs2netcdfs.py download_process_logs():811 [12052] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.272.00/parosci.log (1520198 bytes) INFO 2025-11-06 15:27:22,138 logs2netcdfs.py download_process_logs():811 [12052] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.272.00/tailCone.log (1520491 bytes) INFO 2025-11-06 15:27:22,248 logs2netcdfs.py download_process_logs():811 [12052] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.272.00/biolume.log (1725980 bytes) INFO 2025-11-06 15:27:22,344 logs2netcdfs.py write_variables():577 [12052] Expanding original timeTag to time60Hz variable for raw data INFO 2025-11-06 15:27:22,395 logs2netcdfs.py download_process_logs():830 [12052] Time to process: 0.87 seconds WARNING 2025-11-06 15:27:22,398 process.py download_process():249 [12052] No lopc.bin file for 2004.272.00 INFO 2025-11-06 15:27:22,484 AUV.py nudge_positions():80 [12052] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-11-06 15:27:22,486 AUV.py nudge_positions():114 [12052] - - - 0 0.00 - - - INFO 2025-11-06 15:27:23,504 AUV.py nudge_positions():203 [12052] 180: 0.120 0.0054228 -0.0017876 11375 37.91 21.243 -8.737 2004-09-28T16:55:05.091107840 INFO 2025-11-06 15:27:23,956 AUV.py nudge_positions():203 [12052] 250: 0.120 0.0017125 -0.0007369 8205 27.35 9.300 -4.994 2004-09-28T17:23:35.093964544 INFO 2025-11-06 15:27:46,339 AUV.py nudge_positions():261 [12052] 2399: - - - 3 0.01 - - INFO 2025-11-06 15:27:46,339 AUV.py nudge_positions():267 [12052] Points in final series = 31562 WARNING 2025-11-06 15:27:48,597 AUV.py _create_nudge_plots():376 [12052] No map plot, could not import cartopy WARNING 2025-11-06 15:27:48,617 calibrate.py _depth_process():1925 [12052] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-11-06 15:27:48,766 calibrate.py _geometric_depth_correction():3155 [12052] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-11-06 15:27:48,910 calibrate.py _geometric_depth_correction():3155 [12052] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:49,016 calibrate.py _geometric_depth_correction():3155 [12052] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:49,018 calibrate.py _ctd_process():2651 [12052] Performing range checking of ['ctd1_salinity'] in 2004.272.00/ctd1.nc INFO 2025-11-06 15:27:49,020 calibrate.py _range_qc_combined_nc():890 [12052] Setting 0 ctd1_salinity values to NaN INFO 2025-11-06 15:27:49,020 calibrate.py _range_qc_combined_nc():902 [12052] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-11-06 15:27:49,020 calibrate.py _range_qc_combined_nc():928 [12052] Done range checking ctd1 INFO 2025-11-06 15:27:49,159 calibrate.py _geometric_depth_correction():3155 [12052] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-11-06 15:27:49,274 calibrate.py _geometric_depth_correction():3155 [12052] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-11-06 15:27:49,276 calibrate.py _ctd_process():2651 [12052] Performing range checking of ['ctd2_salinity'] in 2004.272.00/ctd2.nc INFO 2025-11-06 15:27:49,277 calibrate.py _range_qc_combined_nc():890 [12052] Setting 0 ctd2_salinity values to NaN INFO 2025-11-06 15:27:49,278 calibrate.py _range_qc_combined_nc():902 [12052] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-11-06 15:27:49,278 calibrate.py _range_qc_combined_nc():928 [12052] Done range checking ctd2 INFO 2025-11-06 15:27:49,401 calibrate.py _biolume_process():2860 [12052] Checking for non-monotonic increasing time60hz INFO 2025-11-06 15:27:49,600 calibrate.py _biolume_process():2863 [12052] Removing non-monotonic increasing time60hz at indices: [24060 24061 24062 24063 24064 24065 24066 24067 24068 24069 24070 24071 24072 24073 24074 24075 24076 24077 24078 24079 24080 24081 24082 24083 24084 24085 24086 24087 24088 24089] INFO 2025-11-06 15:27:49,635 calibrate.py _geometric_depth_correction():3155 [12052] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-11-06 15:27:49,641 calibrate.py process_logs():3280 [12052] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-11-06 15:27:49,642 calibrate.py process_logs():3274 [12052] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.272.00 ERROR 2025-11-06 15:27:49,642 calibrate.py process_logs():3274 [12052] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.272.00 INFO 2025-11-06 15:27:49,661 calibrate.py write_netcdf():3240 [12052] Writing calibrated instrument data to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.272.00/dorado_2004.272.00_cal.nc INFO 2025-11-06 15:27:49,698 calibrate.py write_netcdf():3244 [12052] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-11-06 15:27:49,724 align.py process_cal():144 [12052] Processing /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.272.00/dorado_2004.272.00_cal.nc INFO 2025-11-06 15:27:49,735 align.py process_cal():211 [12052] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:49,736 align.py process_cal():254 [12052] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:49,757 align.py process_cal():211 [12052] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:49,759 align.py process_cal():254 [12052] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:49,778 align.py process_cal():211 [12052] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:49,779 align.py process_cal():254 [12052] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:49,790 align.py process_cal():166 [12052] Skipping navigation_posx INFO 2025-11-06 15:27:49,790 align.py process_cal():166 [12052] Skipping navigation_posy INFO 2025-11-06 15:27:49,798 align.py process_cal():211 [12052] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:49,800 align.py process_cal():254 [12052] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:49,818 align.py process_cal():211 [12052] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.272.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-11-06 15:27:49,819 align.py process_cal():254 [12052] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:49,836 align.py process_cal():211 [12052] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.272.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-11-06 15:27:49,838 align.py process_cal():254 [12052] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:49,855 align.py process_cal():211 [12052] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.272.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-11-06 15:27:49,857 align.py process_cal():254 [12052] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:49,874 align.py process_cal():211 [12052] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.272.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:49,876 align.py process_cal():254 [12052] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:49,893 align.py process_cal():211 [12052] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.272.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:49,895 align.py process_cal():254 [12052] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:49,913 align.py process_cal():211 [12052] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.272.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:49,915 align.py process_cal():254 [12052] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:49,932 align.py process_cal():211 [12052] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.272.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:49,934 align.py process_cal():254 [12052] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:49,951 align.py process_cal():211 [12052] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.272.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:49,953 align.py process_cal():254 [12052] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:49,972 align.py process_cal():211 [12052] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.272.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:49,974 align.py process_cal():254 [12052] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:49,992 align.py process_cal():211 [12052] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.272.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:49,994 align.py process_cal():254 [12052] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:50,012 align.py process_cal():211 [12052] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.272.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:50,014 align.py process_cal():254 [12052] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:50,031 align.py process_cal():211 [12052] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.272.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:50,033 align.py process_cal():254 [12052] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:50,051 align.py process_cal():211 [12052] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.272.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:50,052 align.py process_cal():254 [12052] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:50,070 align.py process_cal():211 [12052] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.272.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:50,072 align.py process_cal():254 [12052] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:50,089 align.py process_cal():211 [12052] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.272.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:50,091 align.py process_cal():254 [12052] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:50,109 align.py process_cal():211 [12052] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.272.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:50,111 align.py process_cal():254 [12052] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:50,129 align.py process_cal():211 [12052] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.272.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:50,131 align.py process_cal():254 [12052] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:50,149 align.py process_cal():211 [12052] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.272.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:50,151 align.py process_cal():254 [12052] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:50,169 align.py process_cal():211 [12052] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.272.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:50,171 align.py process_cal():254 [12052] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:50,189 align.py process_cal():211 [12052] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.272.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:50,191 align.py process_cal():254 [12052] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:50,212 align.py process_cal():254 [12052] isus_nitrate: instrument_sample_rate_hz = 0.61 INFO 2025-11-06 15:27:50,227 align.py process_cal():254 [12052] isus_temp: instrument_sample_rate_hz = 0.61 INFO 2025-11-06 15:27:50,244 align.py process_cal():254 [12052] isus_quality: instrument_sample_rate_hz = 0.61 INFO 2025-11-06 15:27:50,260 align.py process_cal():254 [12052] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-11-06 15:27:50,278 align.py process_cal():254 [12052] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:50,336 align.py write_netcdf():342 [12052] Writing aligned data to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.272.00/dorado_2004.272.00_align.nc INFO 2025-11-06 15:27:50,370 align.py write_netcdf():347 [12052] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-11-06 15:27:50,371 resample.py resample_mission():1185 [12052] Using depth_threshold = 10.00 m INFO 2025-11-06 15:27:50,392 resample.py instruments_variables():235 [12052] Reading variables from /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.272.00/dorado_2004.272.00_align.nc mission netCDF file INFO 2025-11-06 15:27:50,396 resample.py instruments_variables():235 [12052] Reading variables from /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.272.00/dorado_2004.272.00_align.nc mission netCDF file INFO 2025-11-06 15:27:50,397 resample.py get_mission_start_end():1145 [12052] navigation: 2004-09-28T16:14:32.497751936 to 2004-09-28T17:59:44.715335424 (0 days 00:00:00.119991680 before mission_end) INFO 2025-11-06 15:27:50,398 resample.py get_mission_start_end():1145 [12052] hs2 : 2004-09-28T16:14:15.768897792 to 2004-09-28T17:59:44.605342848 (0 days 00:00:00.229984256 before mission_end) INFO 2025-11-06 15:27:50,399 resample.py get_mission_start_end():1145 [12052] ctd1 : 2004-09-28T16:14:30.447892224 to 2004-09-28T17:59:44.795329792 (0 days 00:00:00.039997312 before mission_end) INFO 2025-11-06 15:27:50,400 resample.py get_mission_start_end():1145 [12052] ctd2 : 2004-09-28T16:14:30.837865600 to 2004-09-28T17:59:44.715335424 (0 days 00:00:00.119991680 before mission_end) INFO 2025-11-06 15:27:50,401 resample.py get_mission_start_end():1145 [12052] isus : 2004-09-28T16:15:13.174965376 to 2004-09-28T17:59:44.295364096 (0 days 00:00:00.539963008 before mission_end) INFO 2025-11-06 15:27:50,402 resample.py get_mission_start_end():1145 [12052] biolume : 2004-09-28T16:14:10.619216384 to 2004-09-28T17:59:44.065345536 (0 days 00:00:00.769981568 before mission_end) INFO 2025-11-06 15:27:50,404 resample.py get_mission_start_end():1145 [12052] tailcone : 2004-09-28T16:14:10.799238144 to 2004-09-28T17:59:44.835327104 (0 days 00:00:00 before mission_end) INFO 2025-11-06 15:27:50,405 resample.py instruments_variables():235 [12052] Reading variables from /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.272.00/dorado_2004.272.00_align.nc mission netCDF file INFO 2025-11-06 15:27:50,406 resample.py resample_coordinates():249 [12052] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,464 resample.py resample_variable():1031 [12052] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,475 resample.py resample_variable():1031 [12052] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,485 resample.py resample_variable():1031 [12052] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,495 resample.py resample_variable():1031 [12052] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,504 resample.py resample_variable():1031 [12052] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,514 resample.py resample_variable():1031 [12052] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,523 resample.py resample_variable():1031 [12052] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,534 resample.py resample_variable():1031 [12052] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,542 resample.py resample_variable():1031 [12052] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,551 resample.py resample_variable():1031 [12052] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,559 resample.py resample_variable():1031 [12052] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,567 resample.py resample_variable():1031 [12052] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,578 resample.py resample_variable():1031 [12052] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,590 resample.py resample_variable():1031 [12052] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,598 resample.py resample_variable():1031 [12052] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,606 resample.py resample_variable():1031 [12052] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,617 resample.py resample_variable():1031 [12052] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,626 resample.py resample_variable():1031 [12052] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,636 resample.py resample_variable():1031 [12052] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,646 resample.py resample_variable():1031 [12052] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,660 resample.py resample_variable():1031 [12052] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,669 resample.py resample_variable():1031 [12052] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,678 resample.py resample_variable():1031 [12052] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,686 resample.py resample_variable():1031 [12052] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,693 resample.py resample_variable():1031 [12052] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,700 resample.py resample_variable():1031 [12052] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,710 resample.py resample_variable():1031 [12052] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:50,864 resample.py resample_mission():1297 [12052] Saved resampled mission to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.272.00/dorado_2004.272.00_1S.nc INFO 2025-11-06 15:27:52,208 create_products.py gulper_odv():401 [12052] No gulper times found for 2004.272.00 INFO 2025-11-06 15:27:52,213 archive.py copy_to_AUVTCD():62 [12052] Archiving /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.272.00/dorado_2004.272.00 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-11-06 15:27:52,247 archive.py copy_to_AUVTCD():80 [12052] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.272.00_1S.nc INFO 2025-11-06 15:27:52,406 archive.py copy_to_AUVTCD():84 [12052] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.272.00/dorado_2004.272.00_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-11-06 15:27:52,409 archive.py copy_to_AUVTCD():80 [12052] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.272.00_cal.nc INFO 2025-11-06 15:27:52,520 archive.py copy_to_AUVTCD():84 [12052] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.272.00/dorado_2004.272.00_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-11-06 15:27:52,541 archive.py copy_to_AUVTCD():80 [12052] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.272.00_align.nc INFO 2025-11-06 15:27:52,720 archive.py copy_to_AUVTCD():84 [12052] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.272.00/dorado_2004.272.00_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-11-06 15:27:52,946 archive.py copy_to_AUVTCD():110 [12052] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.272.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004272/2004.272.00 done. INFO 2025-11-06 15:27:53,149 archive.py copy_to_AUVTCD():110 [12052] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.272.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004272/2004.272.00 done. INFO 2025-11-06 15:27:53,203 archive.py copy_to_AUVTCD():110 [12052] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.272.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004272/2004.272.00 done. INFO 2025-11-06 15:27:53,269 archive.py copy_to_AUVTCD():110 [12052] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.272.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004272/2004.272.00 done. INFO 2025-11-06 15:27:53,363 archive.py copy_to_AUVTCD():110 [12052] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.272.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004272/2004.272.00 done. INFO 2025-11-06 15:27:53,557 archive.py copy_to_AUVTCD():110 [12052] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.272.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004272/2004.272.00 done. INFO 2025-11-06 15:27:53,593 archive.py copy_to_AUVTCD():110 [12052] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.272.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004272/2004.272.00 done. INFO 2025-11-06 15:27:53,627 archive.py copy_to_AUVTCD():110 [12052] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.272.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004272/2004.272.00 done. INFO 2025-11-06 15:27:53,701 archive.py copy_to_AUVTCD():110 [12052] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.272.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004272/2004.272.00 done. INFO 2025-11-06 15:27:53,701 archive.py copy_to_AUVTCD():118 [12052] Archiving product files INFO 2025-11-06 15:27:53,702 archive.py copy_to_AUVTCD():163 [12052] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.272.00/dorado_2004.272.00_processing.log /Volumes/AUVCTD/surveys/2004/netcdf