INFO 2025-11-06 15:27:13,285 logs2netcdfs.py download_process_logs():762 [12053] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004271/2004.271.00 INFO 2025-11-06 15:27:13,286 logs2netcdfs.py download_process_logs():791 [12053] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004271/2004.271.00 to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.271.00 INFO 2025-11-06 15:27:29,493 logs2netcdfs.py download_process_logs():802 [12053] Processing mission: dorado 2004.271.00 INFO 2025-11-06 15:27:29,493 logs2netcdfs.py download_process_logs():811 [12053] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.271.00/ctdDriver.log (7482155 bytes) INFO 2025-11-06 15:27:29,958 logs2netcdfs.py download_process_logs():811 [12053] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.271.00/ctdDriver2.log (7482325 bytes) INFO 2025-11-06 15:27:30,445 logs2netcdfs.py download_process_logs():811 [12053] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.271.00/gps.log (83156 bytes) INFO 2025-11-06 15:27:30,485 logs2netcdfs.py download_process_logs():811 [12053] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.271.00/hydroscatlog.log (5103314 bytes) INFO 2025-11-06 15:27:30,959 logs2netcdfs.py download_process_logs():811 [12053] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.271.00/navigation.log (16578127 bytes) INFO 2025-11-06 15:27:32,041 logs2netcdfs.py download_process_logs():811 [12053] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.271.00/isuslog.log (481468 bytes) INFO 2025-11-06 15:27:32,164 logs2netcdfs.py download_process_logs():811 [12053] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.271.00/parosci.log (5105510 bytes) INFO 2025-11-06 15:27:32,503 logs2netcdfs.py download_process_logs():811 [12053] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.271.00/tailCone.log (5105995 bytes) INFO 2025-11-06 15:27:33,020 logs2netcdfs.py download_process_logs():811 [12053] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.271.00/biolume.log (5789932 bytes) INFO 2025-11-06 15:27:33,657 logs2netcdfs.py write_variables():577 [12053] Expanding original timeTag to time60Hz variable for raw data INFO 2025-11-06 15:27:33,884 logs2netcdfs.py download_process_logs():830 [12053] Time to process: 4.39 seconds WARNING 2025-11-06 15:27:33,899 process.py download_process():249 [12053] No lopc.bin file for 2004.271.00 INFO 2025-11-06 15:27:34,089 AUV.py nudge_positions():80 [12053] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-11-06 15:27:34,092 AUV.py nudge_positions():114 [12053] - - - 0 0.00 - - - INFO 2025-11-06 15:27:35,173 AUV.py nudge_positions():203 [12053] 167: 0.190 0.0000043 -0.0000124 14 0.04 14.805 -52.636 2004-09-27T15:59:16.996538624 INFO 2025-11-06 15:27:35,264 AUV.py nudge_positions():203 [12053] 179: 0.200 0.0006553 0.0009119 7665 25.55 3.799 6.614 2004-09-27T16:25:00.990768000 INFO 2025-11-06 15:27:35,881 AUV.py nudge_positions():203 [12053] 254: 0.190 -0.0000241 -0.0000069 20 0.06 -56.459 -20.148 2004-09-27T16:26:18.995424256 INFO 2025-11-06 15:27:36,107 AUV.py nudge_positions():203 [12053] 277: 0.190 0.0003733 0.0005020 4479 14.93 3.704 6.232 2004-09-27T16:41:36.992536960 INFO 2025-11-06 15:27:36,897 AUV.py nudge_positions():203 [12053] 364: 0.010 -0.0000591 0.0003029 7820 26.06 -0.336 2.154 2004-09-27T17:09:07.189490816 INFO 2025-11-06 15:27:37,739 AUV.py nudge_positions():203 [12053] 443: 0.200 -0.0000076 -0.0000006 84 0.28 -4.093 -0.417 2004-09-27T17:10:41.992996480 INFO 2025-11-06 15:27:37,769 AUV.py nudge_positions():203 [12053] 445: 0.010 -0.0000933 0.0002018 4951 16.50 -0.837 2.267 2004-09-27T17:27:13.195094400 INFO 2025-11-06 15:27:38,900 AUV.py nudge_positions():203 [12053] 533: 0.010 0.0009170 0.0013144 10154 33.85 4.014 7.196 2004-09-27T18:02:31.190001664 INFO 2025-11-06 15:27:40,257 AUV.py nudge_positions():203 [12053] 631: 0.010 0.0005363 0.0005249 5305 17.68 4.494 5.501 2004-09-27T18:21:49.190673408 INFO 2025-11-06 15:27:41,510 AUV.py nudge_positions():203 [12053] 709: 0.200 -0.0003091 0.0009903 13144 43.81 -1.045 4.189 2004-09-27T19:06:54.995312896 INFO 2025-11-06 15:27:42,544 AUV.py nudge_positions():203 [12053] 790: 0.010 0.0008702 0.0011626 10160 33.86 3.808 6.362 2004-09-27T19:42:07.190617856 INFO 2025-11-06 15:27:43,881 AUV.py nudge_positions():203 [12053] 865: 0.010 -0.0000237 0.0000044 25 0.08 -43.979 10.160 2004-09-27T19:43:26.195205504 INFO 2025-11-06 15:27:44,218 AUV.py nudge_positions():203 [12053] 884: 0.020 0.0003552 0.0004810 5335 17.78 2.961 5.013 2004-09-27T20:01:31.190878208 INFO 2025-11-06 15:27:45,687 AUV.py nudge_positions():203 [12053] 962: 0.010 -0.0008714 0.0014576 15275 50.91 -2.538 5.305 2004-09-27T20:53:43.196321280 INFO 2025-11-06 15:27:47,110 AUV.py nudge_positions():203 [12053] 1039: 0.010 0.0009464 0.0016819 15819 52.73 2.662 5.910 2004-09-27T21:47:43.194365952 INFO 2025-11-06 15:27:48,283 AUV.py nudge_positions():203 [12053] 1111: 0.010 0.0000263 -0.0000099 485 1.61 2.419 -1.138 2004-09-27T21:50:31.192857472 INFO 2025-11-06 15:27:48,829 AUV.py nudge_positions():261 [12053] 1121: - - - 3 0.01 - - INFO 2025-11-06 15:27:48,829 AUV.py nudge_positions():267 [12053] Points in final series = 105961 WARNING 2025-11-06 15:28:00,484 AUV.py _create_nudge_plots():376 [12053] No map plot, could not import cartopy WARNING 2025-11-06 15:28:00,534 calibrate.py _depth_process():1925 [12053] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-11-06 15:28:00,985 calibrate.py _geometric_depth_correction():3155 [12053] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-11-06 15:28:01,432 calibrate.py _geometric_depth_correction():3155 [12053] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-11-06 15:28:01,784 calibrate.py _geometric_depth_correction():3155 [12053] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-11-06 15:28:01,786 calibrate.py _ctd_process():2651 [12053] Performing range checking of ['ctd1_salinity'] in 2004.271.00/ctd1.nc INFO 2025-11-06 15:28:01,787 calibrate.py _range_qc_combined_nc():890 [12053] Setting 0 ctd1_salinity values to NaN INFO 2025-11-06 15:28:01,787 calibrate.py _range_qc_combined_nc():902 [12053] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-11-06 15:28:01,787 calibrate.py _range_qc_combined_nc():928 [12053] Done range checking ctd1 INFO 2025-11-06 15:28:02,206 calibrate.py _geometric_depth_correction():3155 [12053] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-11-06 15:28:02,566 calibrate.py _geometric_depth_correction():3155 [12053] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-11-06 15:28:02,568 calibrate.py _ctd_process():2651 [12053] Performing range checking of ['ctd2_salinity'] in 2004.271.00/ctd2.nc INFO 2025-11-06 15:28:02,569 calibrate.py _range_qc_combined_nc():890 [12053] Setting 2 ctd2_salinity values to NaN INFO 2025-11-06 15:28:02,569 calibrate.py _range_qc_combined_nc():902 [12053] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-11-06 15:28:02,569 calibrate.py _range_qc_combined_nc():928 [12053] Done range checking ctd2 INFO 2025-11-06 15:28:02,591 calibrate.py _biolume_process():2860 [12053] Checking for non-monotonic increasing time60hz INFO 2025-11-06 15:28:03,238 calibrate.py _geometric_depth_correction():3155 [12053] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-11-06 15:28:03,243 calibrate.py process_logs():3280 [12053] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-11-06 15:28:03,244 calibrate.py process_logs():3274 [12053] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.271.00 ERROR 2025-11-06 15:28:03,244 calibrate.py process_logs():3274 [12053] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.271.00 INFO 2025-11-06 15:28:03,332 calibrate.py write_netcdf():3240 [12053] Writing calibrated instrument data to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00_cal.nc INFO 2025-11-06 15:28:03,379 calibrate.py write_netcdf():3244 [12053] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-11-06 15:28:03,405 align.py process_cal():144 [12053] Processing /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00_cal.nc INFO 2025-11-06 15:28:03,428 align.py process_cal():211 [12053] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:28:03,430 align.py process_cal():254 [12053] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:28:03,485 align.py process_cal():211 [12053] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:28:03,488 align.py process_cal():254 [12053] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:28:03,540 align.py process_cal():211 [12053] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:28:03,543 align.py process_cal():254 [12053] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:28:03,572 align.py process_cal():166 [12053] Skipping navigation_posx INFO 2025-11-06 15:28:03,572 align.py process_cal():166 [12053] Skipping navigation_posy INFO 2025-11-06 15:28:03,594 align.py process_cal():211 [12053] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:28:03,597 align.py process_cal():254 [12053] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:28:03,647 align.py process_cal():211 [12053] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-11-06 15:28:03,650 align.py process_cal():254 [12053] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:28:03,695 align.py process_cal():211 [12053] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-11-06 15:28:03,698 align.py process_cal():254 [12053] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:28:03,744 align.py process_cal():211 [12053] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-11-06 15:28:03,747 align.py process_cal():254 [12053] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:28:03,792 align.py process_cal():211 [12053] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:28:03,794 align.py process_cal():254 [12053] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:28:03,839 align.py process_cal():211 [12053] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:28:03,843 align.py process_cal():254 [12053] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:28:03,889 align.py process_cal():211 [12053] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:28:03,891 align.py process_cal():254 [12053] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:28:03,936 align.py process_cal():211 [12053] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:28:03,939 align.py process_cal():254 [12053] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:28:03,985 align.py process_cal():211 [12053] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:28:03,988 align.py process_cal():254 [12053] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:28:04,033 align.py process_cal():211 [12053] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:28:04,037 align.py process_cal():254 [12053] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:28:04,083 align.py process_cal():211 [12053] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:28:04,086 align.py process_cal():254 [12053] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:28:04,131 align.py process_cal():211 [12053] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:28:04,134 align.py process_cal():254 [12053] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:28:04,179 align.py process_cal():211 [12053] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:28:04,182 align.py process_cal():254 [12053] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:28:04,227 align.py process_cal():211 [12053] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:28:04,230 align.py process_cal():254 [12053] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:28:04,277 align.py process_cal():211 [12053] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:28:04,280 align.py process_cal():254 [12053] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:28:04,326 align.py process_cal():211 [12053] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:28:04,329 align.py process_cal():254 [12053] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:28:04,376 align.py process_cal():211 [12053] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:28:04,379 align.py process_cal():254 [12053] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:28:04,423 align.py process_cal():211 [12053] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:28:04,426 align.py process_cal():254 [12053] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:28:04,472 align.py process_cal():211 [12053] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:28:04,475 align.py process_cal():254 [12053] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:28:04,521 align.py process_cal():211 [12053] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:28:04,524 align.py process_cal():254 [12053] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:28:04,570 align.py process_cal():211 [12053] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.271.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:28:04,573 align.py process_cal():254 [12053] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:28:04,623 align.py process_cal():254 [12053] isus_nitrate: instrument_sample_rate_hz = 0.52 INFO 2025-11-06 15:28:04,658 align.py process_cal():254 [12053] isus_temp: instrument_sample_rate_hz = 0.52 INFO 2025-11-06 15:28:04,692 align.py process_cal():254 [12053] isus_quality: instrument_sample_rate_hz = 0.52 INFO 2025-11-06 15:28:04,728 align.py process_cal():254 [12053] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-11-06 15:28:04,764 align.py process_cal():254 [12053] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:28:04,850 align.py write_netcdf():342 [12053] Writing aligned data to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00_align.nc INFO 2025-11-06 15:28:04,893 align.py write_netcdf():347 [12053] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-11-06 15:28:04,893 resample.py resample_mission():1185 [12053] Using depth_threshold = 10.00 m INFO 2025-11-06 15:28:04,918 resample.py instruments_variables():235 [12053] Reading variables from /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00_align.nc mission netCDF file INFO 2025-11-06 15:28:04,924 resample.py instruments_variables():235 [12053] Reading variables from /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00_align.nc mission netCDF file INFO 2025-11-06 15:28:04,926 resample.py get_mission_start_end():1145 [12053] navigation: 2004-09-27T15:56:50.196595200 to 2004-09-27T21:51:02.790692864 (0 days 00:00:00 before mission_end) INFO 2025-11-06 15:28:04,928 resample.py get_mission_start_end():1145 [12053] hs2 : 2004-09-27T15:56:33.007772672 to 2004-09-27T21:51:02.550709248 (0 days 00:00:00.239983616 before mission_end) INFO 2025-11-06 15:28:04,929 resample.py get_mission_start_end():1145 [12053] ctd1 : 2004-09-27T15:56:48.176733440 to 2004-09-27T21:51:02.700699136 (0 days 00:00:00.089993728 before mission_end) INFO 2025-11-06 15:28:04,931 resample.py get_mission_start_end():1145 [12053] ctd2 : 2004-09-27T15:56:47.946749440 to 2004-09-27T21:51:02.690699520 (0 days 00:00:00.099993344 before mission_end) INFO 2025-11-06 15:28:04,933 resample.py get_mission_start_end():1145 [12053] isus : 2004-09-27T13:49:53.000000000 to 2004-09-27T21:50:58.000000000 (0 days 00:00:04.790692864 before mission_end) INFO 2025-11-06 15:28:04,934 resample.py get_mission_start_end():1145 [12053] biolume : 2004-09-27T15:56:28.248064512 to 2004-09-27T21:51:01.430751744 (0 days 00:00:01.359941120 before mission_end) INFO 2025-11-06 15:28:04,935 resample.py get_mission_start_end():1145 [12053] tailcone : 2004-09-27T15:56:28.378089856 to 2004-09-27T21:51:02.750695424 (0 days 00:00:00.039997440 before mission_end) INFO 2025-11-06 15:28:04,937 resample.py instruments_variables():235 [12053] Reading variables from /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00_align.nc mission netCDF file INFO 2025-11-06 15:28:04,938 resample.py resample_coordinates():249 [12053] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,075 resample.py resample_variable():1031 [12053] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,100 resample.py resample_variable():1031 [12053] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,123 resample.py resample_variable():1031 [12053] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,146 resample.py resample_variable():1031 [12053] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,168 resample.py resample_variable():1031 [12053] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,189 resample.py resample_variable():1031 [12053] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,209 resample.py resample_variable():1031 [12053] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,230 resample.py resample_variable():1031 [12053] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,249 resample.py resample_variable():1031 [12053] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,268 resample.py resample_variable():1031 [12053] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,287 resample.py resample_variable():1031 [12053] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,306 resample.py resample_variable():1031 [12053] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,324 resample.py resample_variable():1031 [12053] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,342 resample.py resample_variable():1031 [12053] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,362 resample.py resample_variable():1031 [12053] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,381 resample.py resample_variable():1031 [12053] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,402 resample.py resample_variable():1031 [12053] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,421 resample.py resample_variable():1031 [12053] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,441 resample.py resample_variable():1031 [12053] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,460 resample.py resample_variable():1031 [12053] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,479 resample.py resample_variable():1031 [12053] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,499 resample.py resample_variable():1031 [12053] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,510 resample.py resample_variable():1031 [12053] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,519 resample.py resample_variable():1031 [12053] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,527 resample.py resample_variable():1031 [12053] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,537 resample.py resample_variable():1031 [12053] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,558 resample.py resample_variable():1031 [12053] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-11-06 15:28:05,726 resample.py resample_mission():1297 [12053] Saved resampled mission to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00_1S.nc INFO 2025-11-06 15:28:07,928 create_products.py gulper_odv():401 [12053] No gulper times found for 2004.271.00 INFO 2025-11-06 15:28:07,933 archive.py copy_to_AUVTCD():62 [12053] Archiving /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-11-06 15:28:07,935 archive.py copy_to_AUVTCD():80 [12053] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.271.00_1S.nc INFO 2025-11-06 15:28:08,003 archive.py copy_to_AUVTCD():84 [12053] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-11-06 15:28:08,005 archive.py copy_to_AUVTCD():80 [12053] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.271.00_cal.nc INFO 2025-11-06 15:28:08,307 archive.py copy_to_AUVTCD():84 [12053] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-11-06 15:28:08,309 archive.py copy_to_AUVTCD():80 [12053] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.271.00_align.nc INFO 2025-11-06 15:28:08,619 archive.py copy_to_AUVTCD():84 [12053] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-11-06 15:28:08,706 archive.py copy_to_AUVTCD():110 [12053] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.271.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004271/2004.271.00 done. INFO 2025-11-06 15:28:08,790 archive.py copy_to_AUVTCD():110 [12053] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.271.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004271/2004.271.00 done. INFO 2025-11-06 15:28:08,808 archive.py copy_to_AUVTCD():110 [12053] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.271.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004271/2004.271.00 done. INFO 2025-11-06 15:28:08,869 archive.py copy_to_AUVTCD():110 [12053] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.271.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004271/2004.271.00 done. INFO 2025-11-06 15:28:09,031 archive.py copy_to_AUVTCD():110 [12053] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.271.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004271/2004.271.00 done. INFO 2025-11-06 15:28:09,053 archive.py copy_to_AUVTCD():110 [12053] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.271.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004271/2004.271.00 done. INFO 2025-11-06 15:28:09,114 archive.py copy_to_AUVTCD():110 [12053] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.271.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004271/2004.271.00 done. INFO 2025-11-06 15:28:09,189 archive.py copy_to_AUVTCD():110 [12053] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.271.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004271/2004.271.00 done. INFO 2025-11-06 15:28:09,393 archive.py copy_to_AUVTCD():110 [12053] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.271.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004271/2004.271.00 done. INFO 2025-11-06 15:28:09,394 archive.py copy_to_AUVTCD():118 [12053] Archiving product files INFO 2025-11-06 15:28:09,394 archive.py copy_to_AUVTCD():163 [12053] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.271.00/dorado_2004.271.00_processing.log /Volumes/AUVCTD/surveys/2004/netcdf