INFO 2025-11-06 15:27:13,167 logs2netcdfs.py download_process_logs():762 [12049] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004261/2004.261.00 INFO 2025-11-06 15:27:13,168 logs2netcdfs.py download_process_logs():791 [12049] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004261/2004.261.00 to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.261.00 INFO 2025-11-06 15:27:25,486 logs2netcdfs.py download_process_logs():802 [12049] Processing mission: dorado 2004.261.00 INFO 2025-11-06 15:27:25,487 logs2netcdfs.py download_process_logs():811 [12049] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.261.00/ctdDriver.log (7580099 bytes) INFO 2025-11-06 15:27:25,883 logs2netcdfs.py download_process_logs():811 [12049] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.261.00/ctdDriver2.log (7580269 bytes) INFO 2025-11-06 15:27:26,291 logs2netcdfs.py download_process_logs():811 [12049] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.261.00/gps.log (78044 bytes) INFO 2025-11-06 15:27:26,328 logs2netcdfs.py download_process_logs():811 [12049] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.261.00/hydroscatlog.log (5169734 bytes) INFO 2025-11-06 15:27:26,811 logs2netcdfs.py download_process_logs():811 [12049] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.261.00/navigation.log (16793095 bytes) INFO 2025-11-06 15:27:27,722 logs2netcdfs.py download_process_logs():811 [12049] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.261.00/isuslog.log (421276 bytes) INFO 2025-11-06 15:27:27,802 logs2netcdfs.py download_process_logs():811 [12049] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.261.00/parosci.log (5172278 bytes) INFO 2025-11-06 15:27:28,127 logs2netcdfs.py download_process_logs():811 [12049] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.261.00/tailCone.log (5172235 bytes) INFO 2025-11-06 15:27:28,584 logs2netcdfs.py download_process_logs():811 [12049] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.261.00/biolume.log (5865548 bytes) INFO 2025-11-06 15:27:28,991 logs2netcdfs.py write_variables():577 [12049] Expanding original timeTag to time60Hz variable for raw data INFO 2025-11-06 15:27:29,205 logs2netcdfs.py download_process_logs():830 [12049] Time to process: 3.72 seconds WARNING 2025-11-06 15:27:29,221 process.py download_process():249 [12049] No lopc.bin file for 2004.261.00 INFO 2025-11-06 15:27:29,402 AUV.py nudge_positions():80 [12049] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-11-06 15:27:29,406 AUV.py nudge_positions():114 [12049] - - - 0 0.00 - - - INFO 2025-11-06 15:27:31,018 AUV.py nudge_positions():203 [12049] 180: 0.170 0.0007707 0.0008883 7790 25.96 4.397 6.340 2004-09-17T16:09:37.195451264 INFO 2025-11-06 15:27:31,920 AUV.py nudge_positions():203 [12049] 266: 0.170 0.0004264 0.0005050 4524 15.08 4.188 6.205 2004-09-17T16:26:07.197631616 INFO 2025-11-06 15:27:32,822 AUV.py nudge_positions():203 [12049] 347: 0.170 -0.0000587 0.0004603 7850 26.16 -0.333 3.260 2004-09-17T16:53:37.194598912 INFO 2025-11-06 15:27:34,044 AUV.py nudge_positions():203 [12049] 441: 0.170 -0.0000424 0.0002796 4815 16.05 -0.392 3.229 2004-09-17T17:11:13.202257408 INFO 2025-11-06 15:27:34,773 AUV.py nudge_positions():203 [12049] 515: 0.170 0.0009944 0.0012376 10343 34.48 4.272 6.651 2004-09-17T17:46:55.195520896 INFO 2025-11-06 15:27:35,631 AUV.py nudge_positions():203 [12049] 592: 0.170 0.0000027 0.0000022 55 0.18 2.201 2.273 2004-09-17T17:48:22.199560704 INFO 2025-11-06 15:27:35,702 AUV.py nudge_positions():203 [12049] 599: 0.180 0.0005054 0.0005038 5385 17.95 4.173 5.201 2004-09-17T18:06:25.195370496 INFO 2025-11-06 15:27:36,437 AUV.py nudge_positions():203 [12049] 683: 0.180 -0.0004062 0.0011694 13295 44.31 -1.358 4.890 2004-09-17T18:52:07.197530240 INFO 2025-11-06 15:27:37,324 AUV.py nudge_positions():203 [12049] 773: 0.170 0.0008016 0.0012255 10114 33.71 3.524 6.736 2004-09-17T19:27:19.202848256 INFO 2025-11-06 15:27:38,656 AUV.py nudge_positions():203 [12049] 874: 0.180 0.0004568 0.0005568 6160 20.53 3.298 5.026 2004-09-17T19:49:31.201599872 INFO 2025-11-06 15:27:39,658 AUV.py nudge_positions():203 [12049] 954: 0.180 -0.0008798 0.0015539 15175 50.58 -2.579 5.693 2004-09-17T20:41:25.198276480 INFO 2025-11-06 15:27:40,723 AUV.py nudge_positions():203 [12049] 1034: 0.180 0.0010317 0.0019020 16941 56.48 2.709 6.240 2004-09-17T21:39:13.200702208 INFO 2025-11-06 15:27:41,358 AUV.py nudge_positions():261 [12049] 1051: - - - 4 0.01 - - INFO 2025-11-06 15:27:41,358 AUV.py nudge_positions():267 [12049] Points in final series = 107640 WARNING 2025-11-06 15:27:42,272 AUV.py _create_nudge_plots():376 [12049] No map plot, could not import cartopy WARNING 2025-11-06 15:27:42,320 calibrate.py _depth_process():1925 [12049] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-11-06 15:27:42,771 calibrate.py _geometric_depth_correction():3155 [12049] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:43,281 calibrate.py _geometric_depth_correction():3155 [12049] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-11-06 15:27:43,675 calibrate.py _geometric_depth_correction():3155 [12049] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-11-06 15:27:43,676 calibrate.py _ctd_process():2651 [12049] Performing range checking of ['ctd1_salinity'] in 2004.261.00/ctd1.nc INFO 2025-11-06 15:27:43,677 calibrate.py _range_qc_combined_nc():890 [12049] Setting 0 ctd1_salinity values to NaN INFO 2025-11-06 15:27:43,678 calibrate.py _range_qc_combined_nc():902 [12049] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-11-06 15:27:43,678 calibrate.py _range_qc_combined_nc():928 [12049] Done range checking ctd1 INFO 2025-11-06 15:27:44,184 calibrate.py _geometric_depth_correction():3155 [12049] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:44,678 calibrate.py _geometric_depth_correction():3155 [12049] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:44,682 calibrate.py _ctd_process():2651 [12049] Performing range checking of ['ctd2_salinity'] in 2004.261.00/ctd2.nc INFO 2025-11-06 15:27:44,684 calibrate.py _range_qc_combined_nc():890 [12049] Setting 1 ctd2_salinity values to NaN INFO 2025-11-06 15:27:44,684 calibrate.py _range_qc_combined_nc():902 [12049] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-11-06 15:27:44,684 calibrate.py _range_qc_combined_nc():928 [12049] Done range checking ctd2 INFO 2025-11-06 15:27:44,713 calibrate.py _biolume_process():2860 [12049] Checking for non-monotonic increasing time60hz INFO 2025-11-06 15:27:45,558 calibrate.py _geometric_depth_correction():3155 [12049] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-11-06 15:27:45,563 calibrate.py process_logs():3280 [12049] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-11-06 15:27:45,564 calibrate.py process_logs():3274 [12049] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.261.00 ERROR 2025-11-06 15:27:45,564 calibrate.py process_logs():3274 [12049] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.261.00 INFO 2025-11-06 15:27:45,652 calibrate.py write_netcdf():3240 [12049] Writing calibrated instrument data to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00_cal.nc INFO 2025-11-06 15:27:45,727 calibrate.py write_netcdf():3244 [12049] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-11-06 15:27:45,758 align.py process_cal():144 [12049] Processing /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00_cal.nc INFO 2025-11-06 15:27:45,788 align.py process_cal():211 [12049] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:45,810 align.py process_cal():254 [12049] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:45,889 align.py process_cal():211 [12049] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:45,898 align.py process_cal():254 [12049] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:45,956 align.py process_cal():211 [12049] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:45,960 align.py process_cal():254 [12049] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:45,991 align.py process_cal():166 [12049] Skipping navigation_posx INFO 2025-11-06 15:27:45,992 align.py process_cal():166 [12049] Skipping navigation_posy INFO 2025-11-06 15:27:46,014 align.py process_cal():211 [12049] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:46,017 align.py process_cal():254 [12049] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:46,074 align.py process_cal():211 [12049] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-11-06 15:27:46,077 align.py process_cal():254 [12049] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,130 align.py process_cal():211 [12049] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-11-06 15:27:46,133 align.py process_cal():254 [12049] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,182 align.py process_cal():211 [12049] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-11-06 15:27:46,186 align.py process_cal():254 [12049] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,234 align.py process_cal():211 [12049] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,237 align.py process_cal():254 [12049] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,287 align.py process_cal():211 [12049] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,291 align.py process_cal():254 [12049] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,338 align.py process_cal():211 [12049] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,341 align.py process_cal():254 [12049] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,390 align.py process_cal():211 [12049] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,393 align.py process_cal():254 [12049] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,442 align.py process_cal():211 [12049] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,446 align.py process_cal():254 [12049] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,503 align.py process_cal():211 [12049] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,506 align.py process_cal():254 [12049] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,555 align.py process_cal():211 [12049] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,559 align.py process_cal():254 [12049] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,609 align.py process_cal():211 [12049] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,614 align.py process_cal():254 [12049] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,668 align.py process_cal():211 [12049] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,672 align.py process_cal():254 [12049] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,723 align.py process_cal():211 [12049] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,728 align.py process_cal():254 [12049] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,784 align.py process_cal():211 [12049] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,787 align.py process_cal():254 [12049] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,839 align.py process_cal():211 [12049] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,842 align.py process_cal():254 [12049] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,891 align.py process_cal():211 [12049] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,894 align.py process_cal():254 [12049] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,944 align.py process_cal():211 [12049] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,948 align.py process_cal():254 [12049] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,998 align.py process_cal():211 [12049] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:47,001 align.py process_cal():254 [12049] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:47,050 align.py process_cal():211 [12049] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:47,053 align.py process_cal():254 [12049] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:47,102 align.py process_cal():211 [12049] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:47,106 align.py process_cal():254 [12049] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:47,160 align.py process_cal():254 [12049] isus_nitrate: instrument_sample_rate_hz = 0.46 INFO 2025-11-06 15:27:47,196 align.py process_cal():254 [12049] isus_temp: instrument_sample_rate_hz = 0.46 INFO 2025-11-06 15:27:47,232 align.py process_cal():254 [12049] isus_quality: instrument_sample_rate_hz = 0.46 INFO 2025-11-06 15:27:47,269 align.py process_cal():254 [12049] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-11-06 15:27:47,305 align.py process_cal():254 [12049] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:47,405 align.py write_netcdf():342 [12049] Writing aligned data to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00_align.nc INFO 2025-11-06 15:27:47,458 align.py write_netcdf():347 [12049] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-11-06 15:27:47,459 resample.py resample_mission():1185 [12049] Using depth_threshold = 10.00 m INFO 2025-11-06 15:27:47,493 resample.py instruments_variables():235 [12049] Reading variables from /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00_align.nc mission netCDF file INFO 2025-11-06 15:27:47,502 resample.py instruments_variables():235 [12049] Reading variables from /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00_align.nc mission netCDF file INFO 2025-11-06 15:27:47,504 resample.py get_mission_start_end():1145 [12049] navigation: 2004-09-17T15:41:01.602977536 to 2004-09-17T21:39:51.008112256 (0 days 00:00:00.119991680 before mission_end) INFO 2025-11-06 15:27:47,506 resample.py get_mission_start_end():1145 [12049] hs2 : 2004-09-17T15:40:44.304162560 to 2004-09-17T21:39:51.098105856 (0 days 00:00:00.029998080 before mission_end) INFO 2025-11-06 15:27:47,508 resample.py get_mission_start_end():1145 [12049] ctd1 : 2004-09-17T15:40:59.183143168 to 2004-09-17T21:39:51.008112256 (0 days 00:00:00.119991680 before mission_end) INFO 2025-11-06 15:27:47,511 resample.py get_mission_start_end():1145 [12049] ctd2 : 2004-09-17T15:40:58.893163008 to 2004-09-17T21:39:51.128103936 (0 days 00:00:00 before mission_end) INFO 2025-11-06 15:27:47,513 resample.py get_mission_start_end():1145 [12049] isus : 2004-09-17T13:43:59.000000000 to 2004-09-17T21:39:46.000000000 (0 days 00:00:05.128103936 before mission_end) INFO 2025-11-06 15:27:47,514 resample.py get_mission_start_end():1145 [12049] biolume : 2004-09-17T15:40:39.344467840 to 2004-09-17T21:39:50.508112256 (0 days 00:00:00.619991680 before mission_end) INFO 2025-11-06 15:27:47,516 resample.py get_mission_start_end():1145 [12049] tailcone : 2004-09-17T15:40:39.804470784 to 2004-09-17T21:39:51.088106624 (0 days 00:00:00.039997312 before mission_end) INFO 2025-11-06 15:27:47,518 resample.py instruments_variables():235 [12049] Reading variables from /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00_align.nc mission netCDF file INFO 2025-11-06 15:27:47,520 resample.py resample_coordinates():249 [12049] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,693 resample.py resample_variable():1031 [12049] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,722 resample.py resample_variable():1031 [12049] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,747 resample.py resample_variable():1031 [12049] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,774 resample.py resample_variable():1031 [12049] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,799 resample.py resample_variable():1031 [12049] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,825 resample.py resample_variable():1031 [12049] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,849 resample.py resample_variable():1031 [12049] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,872 resample.py resample_variable():1031 [12049] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,893 resample.py resample_variable():1031 [12049] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,916 resample.py resample_variable():1031 [12049] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,938 resample.py resample_variable():1031 [12049] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,963 resample.py resample_variable():1031 [12049] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,983 resample.py resample_variable():1031 [12049] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,002 resample.py resample_variable():1031 [12049] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,025 resample.py resample_variable():1031 [12049] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,050 resample.py resample_variable():1031 [12049] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,073 resample.py resample_variable():1031 [12049] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,101 resample.py resample_variable():1031 [12049] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,124 resample.py resample_variable():1031 [12049] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,144 resample.py resample_variable():1031 [12049] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,168 resample.py resample_variable():1031 [12049] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,192 resample.py resample_variable():1031 [12049] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,203 resample.py resample_variable():1031 [12049] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,211 resample.py resample_variable():1031 [12049] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,220 resample.py resample_variable():1031 [12049] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,232 resample.py resample_variable():1031 [12049] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,260 resample.py resample_variable():1031 [12049] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,490 resample.py resample_mission():1297 [12049] Saved resampled mission to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00_1S.nc INFO 2025-11-06 15:27:51,029 create_products.py gulper_odv():401 [12049] No gulper times found for 2004.261.00 INFO 2025-11-06 15:27:51,035 archive.py copy_to_AUVTCD():62 [12049] Archiving /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-11-06 15:27:51,180 archive.py copy_to_AUVTCD():80 [12049] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.261.00_1S.nc INFO 2025-11-06 15:27:51,318 archive.py copy_to_AUVTCD():84 [12049] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-11-06 15:27:51,320 archive.py copy_to_AUVTCD():80 [12049] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.261.00_cal.nc INFO 2025-11-06 15:27:51,699 archive.py copy_to_AUVTCD():84 [12049] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-11-06 15:27:51,735 archive.py copy_to_AUVTCD():80 [12049] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.261.00_align.nc INFO 2025-11-06 15:27:52,048 archive.py copy_to_AUVTCD():84 [12049] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-11-06 15:27:52,175 archive.py copy_to_AUVTCD():110 [12049] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.261.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004261/2004.261.00 done. INFO 2025-11-06 15:27:52,410 archive.py copy_to_AUVTCD():110 [12049] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.261.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004261/2004.261.00 done. INFO 2025-11-06 15:27:52,442 archive.py copy_to_AUVTCD():110 [12049] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.261.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004261/2004.261.00 done. INFO 2025-11-06 15:27:52,631 archive.py copy_to_AUVTCD():110 [12049] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.261.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004261/2004.261.00 done. INFO 2025-11-06 15:27:52,942 archive.py copy_to_AUVTCD():110 [12049] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.261.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004261/2004.261.00 done. INFO 2025-11-06 15:27:53,147 archive.py copy_to_AUVTCD():110 [12049] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.261.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004261/2004.261.00 done. INFO 2025-11-06 15:27:53,216 archive.py copy_to_AUVTCD():110 [12049] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.261.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004261/2004.261.00 done. INFO 2025-11-06 15:27:53,304 archive.py copy_to_AUVTCD():110 [12049] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.261.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004261/2004.261.00 done. INFO 2025-11-06 15:27:53,552 archive.py copy_to_AUVTCD():110 [12049] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.261.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004261/2004.261.00 done. INFO 2025-11-06 15:27:53,552 archive.py copy_to_AUVTCD():118 [12049] Archiving product files INFO 2025-11-06 15:27:53,553 archive.py copy_to_AUVTCD():163 [12049] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.261.00/dorado_2004.261.00_processing.log /Volumes/AUVCTD/surveys/2004/netcdf