INFO 2025-11-06 15:27:12,553 logs2netcdfs.py download_process_logs():762 [12045] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004238/2004.238.00 INFO 2025-11-06 15:27:12,556 logs2netcdfs.py download_process_logs():791 [12045] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004238/2004.238.00 to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.238.00 INFO 2025-11-06 15:27:25,425 logs2netcdfs.py download_process_logs():802 [12045] Processing mission: dorado 2004.238.00 INFO 2025-11-06 15:27:25,426 logs2netcdfs.py download_process_logs():811 [12045] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.238.00/ctdDriver.log (6824355 bytes) INFO 2025-11-06 15:27:25,739 logs2netcdfs.py download_process_logs():811 [12045] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.238.00/ctdDriver2.log (6823997 bytes) INFO 2025-11-06 15:27:26,107 logs2netcdfs.py download_process_logs():811 [12045] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.238.00/gps.log (38948 bytes) INFO 2025-11-06 15:27:26,132 logs2netcdfs.py download_process_logs():811 [12045] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.238.00/hydroscatlog.log (4658474 bytes) INFO 2025-11-06 15:27:26,545 logs2netcdfs.py _process_log_file():710 [12045] Non-monotonic increasing time indices in /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.238.00/hydroscatlog.log: [ 1 2 4 5 6 7 8 9 10 11 12 13 14 15 16 18 19 21 23] INFO 2025-11-06 15:27:26,547 logs2netcdfs.py download_process_logs():811 [12045] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.238.00/navigation.log (15126703 bytes) INFO 2025-11-06 15:27:27,419 logs2netcdfs.py download_process_logs():811 [12045] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.238.00/isuslog.log (458812 bytes) INFO 2025-11-06 15:27:27,498 logs2netcdfs.py download_process_logs():811 [12045] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.238.00/parosci.log (4659062 bytes) INFO 2025-11-06 15:27:27,792 logs2netcdfs.py download_process_logs():811 [12045] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.238.00/tailCone.log (4659403 bytes) INFO 2025-11-06 15:27:28,234 logs2netcdfs.py download_process_logs():811 [12045] Processing file /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionlogs/2004.238.00/biolume.log (5283740 bytes) INFO 2025-11-06 15:27:28,602 logs2netcdfs.py write_variables():577 [12045] Expanding original timeTag to time60Hz variable for raw data INFO 2025-11-06 15:27:28,771 logs2netcdfs.py download_process_logs():830 [12045] Time to process: 3.35 seconds WARNING 2025-11-06 15:27:28,784 process.py download_process():249 [12045] No lopc.bin file for 2004.238.00 INFO 2025-11-06 15:27:28,965 AUV.py nudge_positions():80 [12045] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-11-06 15:27:28,970 AUV.py nudge_positions():114 [12045] - - - 0 0.00 - - - INFO 2025-11-06 15:27:30,597 AUV.py nudge_positions():203 [12045] 180: 0.120 -0.0011531 0.0003648 8510 28.36 -6.022 2.383 2004-08-25T16:37:18.591736576 INFO 2025-11-06 15:27:31,104 AUV.py nudge_positions():203 [12045] 230: 0.110 -0.0012145 0.0003984 11095 36.98 -4.866 1.996 2004-08-25T17:15:06.596367616 INFO 2025-11-06 15:27:31,597 AUV.py nudge_positions():203 [12045] 283: 0.110 -0.0014541 0.0005873 12219 40.73 -5.292 2.672 2004-08-25T17:56:42.595380096 INFO 2025-11-06 15:27:31,934 AUV.py nudge_positions():203 [12045] 328: 0.120 -0.0014447 0.0004610 11538 38.46 -5.570 2.221 2004-08-25T18:35:54.594257152 INFO 2025-11-06 15:27:32,372 AUV.py nudge_positions():203 [12045] 378: 0.120 -0.0011186 0.0003799 13045 43.48 -3.817 1.619 2004-08-25T19:20:12.592171648 INFO 2025-11-06 15:27:32,809 AUV.py nudge_positions():203 [12045] 436: 0.130 -0.0008771 -0.0018683 12795 42.65 -3.052 -8.118 2004-08-25T20:03:48.592963456 INFO 2025-11-06 15:27:33,148 AUV.py nudge_positions():203 [12045] 485: 0.130 -0.0005400 -0.0022208 13140 43.80 -1.831 -9.396 2004-08-25T20:48:24.589645184 INFO 2025-11-06 15:27:33,599 AUV.py nudge_positions():203 [12045] 528: 0.130 0.0043646 0.0005619 12120 40.40 16.043 2.577 2004-08-25T21:29:30.590712576 INFO 2025-11-06 15:27:33,605 AUV.py nudge_positions():261 [12045] 508: - - - 3 0.01 - - INFO 2025-11-06 15:27:33,605 AUV.py nudge_positions():267 [12045] Points in final series = 96958 WARNING 2025-11-06 15:27:36,622 AUV.py _create_nudge_plots():376 [12045] No map plot, could not import cartopy WARNING 2025-11-06 15:27:36,667 calibrate.py _depth_process():1925 [12045] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-11-06 15:27:42,679 calibrate.py _hs2_process():2132 [12045] Number of bad hs2 points: 4 of 77607 INFO 2025-11-06 15:27:43,078 calibrate.py _geometric_depth_correction():3155 [12045] hs2: d_beg_time_diff: 2 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:43,525 calibrate.py _geometric_depth_correction():3155 [12045] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:43,892 calibrate.py _geometric_depth_correction():3155 [12045] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:43,894 calibrate.py _ctd_process():2651 [12045] Performing range checking of ['ctd1_salinity'] in 2004.238.00/ctd1.nc INFO 2025-11-06 15:27:43,895 calibrate.py _range_qc_combined_nc():890 [12045] Setting 0 ctd1_salinity values to NaN INFO 2025-11-06 15:27:43,896 calibrate.py _range_qc_combined_nc():902 [12045] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-11-06 15:27:43,896 calibrate.py _range_qc_combined_nc():928 [12045] Done range checking ctd1 INFO 2025-11-06 15:27:44,398 calibrate.py _geometric_depth_correction():3155 [12045] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:44,838 calibrate.py _geometric_depth_correction():3155 [12045] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-11-06 15:27:44,840 calibrate.py _ctd_process():2651 [12045] Performing range checking of ['ctd2_salinity'] in 2004.238.00/ctd2.nc INFO 2025-11-06 15:27:44,841 calibrate.py _range_qc_combined_nc():890 [12045] Setting 0 ctd2_salinity values to NaN INFO 2025-11-06 15:27:44,841 calibrate.py _range_qc_combined_nc():902 [12045] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-11-06 15:27:44,841 calibrate.py _range_qc_combined_nc():928 [12045] Done range checking ctd2 INFO 2025-11-06 15:27:44,877 calibrate.py _biolume_process():2860 [12045] Checking for non-monotonic increasing time60hz INFO 2025-11-06 15:27:45,510 calibrate.py _biolume_process():2863 [12045] Removing non-monotonic increasing time60hz at indices: [60 61 62 63 64 65 66] INFO 2025-11-06 15:27:45,605 calibrate.py _geometric_depth_correction():3155 [12045] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-11-06 15:27:45,610 calibrate.py process_logs():3280 [12045] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-11-06 15:27:45,611 calibrate.py process_logs():3274 [12045] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.238.00 ERROR 2025-11-06 15:27:45,611 calibrate.py process_logs():3274 [12045] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.238.00 INFO 2025-11-06 15:27:45,655 calibrate.py write_netcdf():3240 [12045] Writing calibrated instrument data to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.238.00/dorado_2004.238.00_cal.nc INFO 2025-11-06 15:27:45,703 calibrate.py write_netcdf():3244 [12045] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-11-06 15:27:45,743 align.py process_cal():144 [12045] Processing /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.238.00/dorado_2004.238.00_cal.nc INFO 2025-11-06 15:27:45,772 align.py process_cal():211 [12045] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:45,774 align.py process_cal():254 [12045] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:45,847 align.py process_cal():211 [12045] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:45,852 align.py process_cal():254 [12045] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:45,921 align.py process_cal():211 [12045] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:45,927 align.py process_cal():254 [12045] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:45,961 align.py process_cal():166 [12045] Skipping navigation_posx INFO 2025-11-06 15:27:45,962 align.py process_cal():166 [12045] Skipping navigation_posy INFO 2025-11-06 15:27:45,984 align.py process_cal():211 [12045] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-11-06 15:27:45,987 align.py process_cal():254 [12045] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:46,036 align.py process_cal():211 [12045] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.238.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-11-06 15:27:46,039 align.py process_cal():254 [12045] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,089 align.py process_cal():211 [12045] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.238.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-11-06 15:27:46,092 align.py process_cal():254 [12045] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,138 align.py process_cal():211 [12045] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.238.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-11-06 15:27:46,140 align.py process_cal():254 [12045] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,188 align.py process_cal():211 [12045] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.238.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,191 align.py process_cal():254 [12045] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,238 align.py process_cal():211 [12045] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.238.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,241 align.py process_cal():254 [12045] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,288 align.py process_cal():211 [12045] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.238.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,291 align.py process_cal():254 [12045] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,338 align.py process_cal():211 [12045] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.238.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,341 align.py process_cal():254 [12045] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,388 align.py process_cal():211 [12045] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.238.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,392 align.py process_cal():254 [12045] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,439 align.py process_cal():211 [12045] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.238.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,443 align.py process_cal():254 [12045] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,490 align.py process_cal():211 [12045] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.238.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,494 align.py process_cal():254 [12045] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,539 align.py process_cal():211 [12045] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.238.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,542 align.py process_cal():254 [12045] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,596 align.py process_cal():211 [12045] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.238.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,599 align.py process_cal():254 [12045] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,648 align.py process_cal():211 [12045] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.238.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,650 align.py process_cal():254 [12045] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,704 align.py process_cal():211 [12045] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.238.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,708 align.py process_cal():254 [12045] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,756 align.py process_cal():211 [12045] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.238.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,764 align.py process_cal():254 [12045] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,828 align.py process_cal():211 [12045] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.238.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,834 align.py process_cal():254 [12045] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,900 align.py process_cal():211 [12045] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.238.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,904 align.py process_cal():254 [12045] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,951 align.py process_cal():211 [12045] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.238.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:46,954 align.py process_cal():254 [12045] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:46,999 align.py process_cal():211 [12045] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.238.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:47,002 align.py process_cal():254 [12045] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:47,046 align.py process_cal():211 [12045] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.238.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-11-06 15:27:47,049 align.py process_cal():254 [12045] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-11-06 15:27:47,096 align.py process_cal():254 [12045] isus_nitrate: instrument_sample_rate_hz = 0.61 INFO 2025-11-06 15:27:47,131 align.py process_cal():254 [12045] isus_temp: instrument_sample_rate_hz = 0.61 INFO 2025-11-06 15:27:47,164 align.py process_cal():254 [12045] isus_quality: instrument_sample_rate_hz = 0.61 INFO 2025-11-06 15:27:47,202 align.py process_cal():254 [12045] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-11-06 15:27:47,236 align.py process_cal():254 [12045] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-11-06 15:27:47,331 align.py write_netcdf():342 [12045] Writing aligned data to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.238.00/dorado_2004.238.00_align.nc INFO 2025-11-06 15:27:47,383 align.py write_netcdf():347 [12045] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-11-06 15:27:47,384 resample.py resample_mission():1185 [12045] Using depth_threshold = 10.00 m INFO 2025-11-06 15:27:47,412 resample.py instruments_variables():235 [12045] Reading variables from /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.238.00/dorado_2004.238.00_align.nc mission netCDF file INFO 2025-11-06 15:27:47,420 resample.py instruments_variables():235 [12045] Reading variables from /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.238.00/dorado_2004.238.00_align.nc mission netCDF file INFO 2025-11-06 15:27:47,422 resample.py get_mission_start_end():1145 [12045] navigation: 2004-08-25T16:06:19.209113088 to 2004-08-25T21:29:31.190671488 (0 days 00:00:00.039997056 before mission_end) INFO 2025-11-06 15:27:47,424 resample.py get_mission_start_end():1145 [12045] hs2 : 2004-08-25T16:06:02.050288384 to 2004-08-25T21:29:31.150674048 (0 days 00:00:00.079994496 before mission_end) INFO 2025-11-06 15:27:47,426 resample.py get_mission_start_end():1145 [12045] ctd1 : 2004-08-25T16:06:26.398620544 to 2004-08-25T21:29:31.220669312 (0 days 00:00:00.009999232 before mission_end) INFO 2025-11-06 15:27:47,428 resample.py get_mission_start_end():1145 [12045] ctd2 : 2004-08-25T16:06:27.078573952 to 2004-08-25T21:29:31.130675584 (0 days 00:00:00.099992960 before mission_end) INFO 2025-11-06 15:27:47,429 resample.py get_mission_start_end():1145 [12045] isus : 2004-08-25T14:56:43.000000000 to 2004-08-25T21:29:26.000000000 (0 days 00:00:05.230668544 before mission_end) INFO 2025-11-06 15:27:47,431 resample.py get_mission_start_end():1145 [12045] biolume : 2004-08-25T16:05:58.160520832 to 2004-08-25T21:29:30.380692480 (0 days 00:00:00.849976064 before mission_end) INFO 2025-11-06 15:27:47,433 resample.py get_mission_start_end():1145 [12045] tailcone : 2004-08-25T16:05:57.750583168 to 2004-08-25T21:29:31.230668544 (0 days 00:00:00 before mission_end) INFO 2025-11-06 15:27:47,435 resample.py instruments_variables():235 [12045] Reading variables from /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.238.00/dorado_2004.238.00_align.nc mission netCDF file INFO 2025-11-06 15:27:47,437 resample.py resample_coordinates():249 [12045] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,587 resample.py resample_variable():1031 [12045] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,613 resample.py resample_variable():1031 [12045] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,642 resample.py resample_variable():1031 [12045] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,669 resample.py resample_variable():1031 [12045] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,694 resample.py resample_variable():1031 [12045] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,716 resample.py resample_variable():1031 [12045] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,737 resample.py resample_variable():1031 [12045] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,760 resample.py resample_variable():1031 [12045] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,780 resample.py resample_variable():1031 [12045] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,803 resample.py resample_variable():1031 [12045] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,825 resample.py resample_variable():1031 [12045] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,844 resample.py resample_variable():1031 [12045] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,914 resample.py resample_variable():1031 [12045] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,937 resample.py resample_variable():1031 [12045] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,958 resample.py resample_variable():1031 [12045] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,978 resample.py resample_variable():1031 [12045] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:47,997 resample.py resample_variable():1031 [12045] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,019 resample.py resample_variable():1031 [12045] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,041 resample.py resample_variable():1031 [12045] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,062 resample.py resample_variable():1031 [12045] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,082 resample.py resample_variable():1031 [12045] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,105 resample.py resample_variable():1031 [12045] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,117 resample.py resample_variable():1031 [12045] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,126 resample.py resample_variable():1031 [12045] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,136 resample.py resample_variable():1031 [12045] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,146 resample.py resample_variable():1031 [12045] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,170 resample.py resample_variable():1031 [12045] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-11-06 15:27:48,383 resample.py resample_mission():1297 [12045] Saved resampled mission to /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.238.00/dorado_2004.238.00_1S.nc INFO 2025-11-06 15:27:50,616 create_products.py gulper_odv():401 [12045] No gulper times found for 2004.238.00 INFO 2025-11-06 15:27:50,621 archive.py copy_to_AUVTCD():62 [12045] Archiving /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.238.00/dorado_2004.238.00 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-11-06 15:27:50,623 archive.py copy_to_AUVTCD():80 [12045] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.238.00_1S.nc INFO 2025-11-06 15:27:50,689 archive.py copy_to_AUVTCD():84 [12045] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.238.00/dorado_2004.238.00_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-11-06 15:27:50,691 archive.py copy_to_AUVTCD():80 [12045] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.238.00_cal.nc INFO 2025-11-06 15:27:50,969 archive.py copy_to_AUVTCD():84 [12045] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.238.00/dorado_2004.238.00_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-11-06 15:27:50,970 archive.py copy_to_AUVTCD():80 [12045] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.238.00_align.nc INFO 2025-11-06 15:27:51,257 archive.py copy_to_AUVTCD():84 [12045] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.238.00/dorado_2004.238.00_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-11-06 15:27:51,383 archive.py copy_to_AUVTCD():110 [12045] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.238.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004238/2004.238.00 done. INFO 2025-11-06 15:27:51,740 archive.py copy_to_AUVTCD():110 [12045] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.238.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004238/2004.238.00 done. INFO 2025-11-06 15:27:51,757 archive.py copy_to_AUVTCD():110 [12045] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.238.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004238/2004.238.00 done. INFO 2025-11-06 15:27:52,097 archive.py copy_to_AUVTCD():110 [12045] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.238.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004238/2004.238.00 done. INFO 2025-11-06 15:27:52,313 archive.py copy_to_AUVTCD():110 [12045] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.238.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004238/2004.238.00 done. INFO 2025-11-06 15:27:52,421 archive.py copy_to_AUVTCD():110 [12045] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.238.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004238/2004.238.00 done. INFO 2025-11-06 15:27:52,605 archive.py copy_to_AUVTCD():110 [12045] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.238.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004238/2004.238.00 done. INFO 2025-11-06 15:27:52,799 archive.py copy_to_AUVTCD():110 [12045] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.238.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004238/2004.238.00 done. INFO 2025-11-06 15:27:53,126 archive.py copy_to_AUVTCD():110 [12045] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.238.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004238/2004.238.00 done. INFO 2025-11-06 15:27:53,127 archive.py copy_to_AUVTCD():118 [12045] Archiving product files INFO 2025-11-06 15:27:53,127 archive.py copy_to_AUVTCD():163 [12045] copyfile /Users/mccann/GitHub/auv-python/data/auv_data/dorado/missionnetcdfs/2004.238.00/dorado_2004.238.00_processing.log /Volumes/AUVCTD/surveys/2004/netcdf