INFO 2025-06-26 05:53:11,986 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:53:11,987 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Re-portaled 8/16/05 - ctdToUse = ctd1 INFO 2025-06-26 05:53:11,987 process.py process_mission():449 [1] Processing OCCO mission 2004.233.01 by user docker_user on host 671049448ece INFO 2025-06-26 05:53:11,987 process.py download_process():165 [1] Download and processing steps for 2004.233.01 INFO 2025-06-26 05:53:11,987 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004233/2004.233.01 INFO 2025-06-26 05:53:11,987 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004233/2004.233.01 to /data/auv_data/dorado/missionlogs/2004.233.01 INFO 2025-06-26 05:53:14,298 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.233.01 INFO 2025-06-26 05:53:14,298 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.233.01/ctdDriver.log (6169195 bytes) INFO 2025-06-26 05:53:14,769 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.233.01/ctdDriver2.log (6169013 bytes) INFO 2025-06-26 05:53:15,230 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.233.01/gps.log (38948 bytes) INFO 2025-06-26 05:53:15,242 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.233.01/hydroscatlog.log (4208834 bytes) INFO 2025-06-26 05:53:15,734 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2004.233.01/hydroscatlog.log: [2172] INFO 2025-06-26 05:53:15,745 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.233.01/navigation.log (13667479 bytes) INFO 2025-06-26 05:53:16,743 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.233.01/isuslog.log (349980 bytes) INFO 2025-06-26 05:53:16,781 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.233.01/parosci.log (4210454 bytes) INFO 2025-06-26 05:53:17,163 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.233.01/tailCone.log (4210363 bytes) INFO 2025-06-26 05:53:17,674 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.233.01/biolume.log (4775372 bytes) INFO 2025-06-26 05:53:18,133 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 05:53:18,382 logs2netcdfs.py download_process_logs():807 [1] Time to process: 4.08 seconds WARNING 2025-06-26 05:53:18,382 process.py download_process():196 [1] No lopc.bin file for 2004.233.01 INFO 2025-06-26 05:53:18,382 process.py calibrate():227 [1] Calibration steps for 2004.233.01 INFO 2025-06-26 05:53:18,546 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:53:18,548 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:53:19,913 calibrate.py _nudge_pos():1806 [1] 163: 0.130 -0.0000058 -0.0000153 60 0.20 -4.350 -14.408 2004-08-20T16:24:15.393688448 INFO 2025-06-26 05:53:19,970 calibrate.py _nudge_pos():1806 [1] 169: 0.140 -0.0012047 0.0004966 7820 26.06 -6.846 3.531 2004-08-20T16:50:24.386205184 INFO 2025-06-26 05:53:20,550 calibrate.py _nudge_pos():1806 [1] 227: 0.140 -0.0011274 0.0004022 10695 35.65 -4.686 2.091 2004-08-20T17:27:00.385768832 INFO 2025-06-26 05:53:20,993 calibrate.py _nudge_pos():1806 [1] 271: 0.140 -0.0010472 0.0004546 11425 38.08 -4.077 2.212 2004-08-20T18:05:48.386290048 INFO 2025-06-26 05:53:21,422 calibrate.py _nudge_pos():1806 [1] 315: 0.140 -0.0011178 0.0004824 11765 39.21 -4.227 2.280 2004-08-20T18:45:44.392152320 INFO 2025-06-26 05:53:21,865 calibrate.py _nudge_pos():1806 [1] 361: 0.140 -0.0016807 0.0002935 12185 40.61 -6.139 1.339 2004-08-20T19:27:06.392123648 INFO 2025-06-26 05:53:22,294 calibrate.py _nudge_pos():1806 [1] 405: 0.150 -0.0018251 -0.0022165 11811 39.38 -6.878 -10.430 2004-08-20T20:07:12.387301632 INFO 2025-06-26 05:53:22,746 calibrate.py _nudge_pos():1806 [1] 450: 0.150 -0.0010736 -0.0018100 8630 28.76 -5.541 -11.660 2004-08-20T20:36:42.386048512 INFO 2025-06-26 05:53:23,219 calibrate.py _nudge_pos():1806 [1] 496: 0.160 0.0034714 0.0003098 10725 35.75 14.420 1.606 2004-08-20T21:13:12.386023296 INFO 2025-06-26 05:53:23,548 calibrate.py _nudge_pos():1862 [1] 507: - - - 2 0.00 - - INFO 2025-06-26 05:53:23,548 calibrate.py _nudge_pos():1868 [1] Points in final series = 87603 WARNING 2025-06-26 05:53:23,620 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:53:32,434 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 2 of 70131 INFO 2025-06-26 05:53:32,956 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:53:33,596 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:53:34,109 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:53:34,112 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.233.01/ctd1.nc INFO 2025-06-26 05:53:34,113 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:53:34,113 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:53:34,113 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:53:34,729 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:53:35,243 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:53:35,246 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.233.01/ctd2.nc INFO 2025-06-26 05:53:35,247 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:53:35,247 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:53:35,247 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 05:53:35,275 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 05:53:36,246 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 05:53:36,252 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 05:53:36,252 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.233.01 ERROR 2025-06-26 05:53:36,252 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.233.01 INFO 2025-06-26 05:53:36,322 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.233.01/dorado_2004.233.01_cal.nc INFO 2025-06-26 05:53:36,405 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 05:53:36,409 process.py align():251 [1] Alignment steps for 2004.233.01 INFO 2025-06-26 05:53:36,438 align.py process_cal():139 [1] Processing dorado_2004.233.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.233.01 INFO 2025-06-26 05:53:36,465 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:53:36,469 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:53:36,537 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:53:36,542 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:53:36,605 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:53:36,610 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:53:36,647 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:53:36,647 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:53:36,673 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:53:36,677 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:53:36,738 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.233.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:53:36,742 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:53:36,797 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.233.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:53:36,801 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:53:36,855 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.233.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:53:36,859 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:53:36,913 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.233.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:53:36,917 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:53:36,974 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.233.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:53:36,977 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:53:37,034 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.233.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:53:37,038 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:53:37,093 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.233.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:53:37,097 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:53:37,151 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.233.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:53:37,155 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:53:37,210 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.233.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:53:37,214 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:53:37,268 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.233.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:53:37,272 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:53:37,328 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.233.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:53:37,331 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:53:37,385 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.233.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:53:37,389 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:53:37,444 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.233.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:53:37,449 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:53:37,520 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.233.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:53:37,524 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:53:37,588 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.233.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:53:37,591 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:53:37,647 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.233.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:53:37,651 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:53:37,706 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.233.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:53:37,711 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:53:37,766 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.233.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:53:37,770 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:53:37,826 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.233.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:53:37,830 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:53:37,885 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.233.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:53:37,889 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:53:37,955 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.51 INFO 2025-06-26 05:53:38,006 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.51 INFO 2025-06-26 05:53:38,046 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.51 INFO 2025-06-26 05:53:38,087 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 05:53:38,131 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:53:38,174 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.233.01/dorado_2004.233.01_align.nc INFO 2025-06-26 05:53:38,249 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 05:53:38,251 process.py resample():273 [1] Resampling steps for 2004.233.01 INFO 2025-06-26 05:53:38,252 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:53:38,277 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.233.01/dorado_2004.233.01_align.nc mission netCDF file INFO 2025-06-26 05:53:38,282 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.233.01/dorado_2004.233.01_align.nc mission netCDF file INFO 2025-06-26 05:53:38,283 resample.py get_mission_start_end():1145 [1] navigation: 2004-08-20T16:21:43.394101120 to 2004-08-20T21:13:44.823801088 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 05:53:38,285 resample.py get_mission_start_end():1145 [1] hs2 : 2004-08-20T16:21:25.515326080 to 2004-08-20T21:13:44.823801088 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 05:53:38,287 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-08-20T16:21:41.304244480 to 2004-08-20T21:13:44.903795712 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 05:53:38,288 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-08-20T16:21:41.554227328 to 2004-08-20T21:13:44.883796992 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-26 05:53:38,289 resample.py get_mission_start_end():1145 [1] isus : 2004-08-20T15:16:34.000000000 to 2004-08-20T21:13:41.000000000 (0 days 00:00:03.933793536 before mission_end) INFO 2025-06-26 05:53:38,291 resample.py get_mission_start_end():1145 [1] biolume : 2004-08-20T16:21:20.755617920 to 2004-08-20T21:13:44.323801088 (0 days 00:00:00.609992448 before mission_end) INFO 2025-06-26 05:53:38,292 resample.py get_mission_start_end():1145 [1] tailcone : 2004-08-20T16:21:22.265548672 to 2004-08-20T21:13:44.933793536 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:53:38,293 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.233.01/dorado_2004.233.01_align.nc mission netCDF file INFO 2025-06-26 05:53:38,293 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:38,490 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:38,525 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:38,559 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:38,594 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:38,624 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:38,655 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:38,685 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:38,714 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:38,742 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:38,769 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:38,796 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:38,823 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:38,849 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:38,877 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:38,904 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:38,931 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:38,960 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:38,992 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:39,023 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:39,052 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:39,082 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:39,111 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:39,127 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:39,139 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:39,152 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:39,166 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:39,199 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 05:53:39,394 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.233.01/dorado_2004.233.01_1S.nc INFO 2025-06-26 05:53:40,446 create_products.py gulper_odv():401 [1] No gulper times found for 2004.233.01 INFO 2025-06-26 05:53:40,446 process.py archive():337 [1] Archiving steps for 2004.233.01 INFO 2025-06-26 05:53:40,446 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.233.01/dorado_2004.233.01, BASE_PATH = /data/auv_data INFO 2025-06-26 05:53:40,446 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.233.01/dorado_2004.233.01 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 05:53:40,448 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.233.01_1S.nc INFO 2025-06-26 05:53:40,465 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.233.01/dorado_2004.233.01_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:53:40,466 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.233.01_cal.nc INFO 2025-06-26 05:53:40,533 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.233.01/dorado_2004.233.01_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:53:40,534 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.233.01_align.nc INFO 2025-06-26 05:53:40,606 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.233.01/dorado_2004.233.01_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:53:40,632 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.233.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004233/2004.233.01 done. INFO 2025-06-26 05:53:40,654 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.233.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004233/2004.233.01 done. INFO 2025-06-26 05:53:40,659 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.233.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004233/2004.233.01 done. INFO 2025-06-26 05:53:40,675 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.233.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004233/2004.233.01 done. INFO 2025-06-26 05:53:40,713 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.233.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004233/2004.233.01 done. INFO 2025-06-26 05:53:40,720 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.233.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004233/2004.233.01 done. INFO 2025-06-26 05:53:40,736 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.233.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004233/2004.233.01 done. INFO 2025-06-26 05:53:40,756 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.233.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004233/2004.233.01 done. INFO 2025-06-26 05:53:40,810 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.233.01/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004233/2004.233.01 done. INFO 2025-06-26 05:53:40,810 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:53:40,810 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.233.01/dorado_2004.233.01_processing.log /Volumes/AUVCTD/surveys/2004/netcdf