INFO 2025-06-26 05:50:14,657 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:50:14,657 process.py process_mission():434 [1] dorado_info[mission]["comment"] = SDP 10/6/04 - re-portaled 8/11/05 - ctdToUse = ctd1 INFO 2025-06-26 05:50:14,657 process.py process_mission():449 [1] Processing AUVCTD mission 2004.170.03 by user docker_user on host 671049448ece INFO 2025-06-26 05:50:14,657 process.py download_process():165 [1] Download and processing steps for 2004.170.03 INFO 2025-06-26 05:50:14,657 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2004/2004170/2004.170.03 INFO 2025-06-26 05:50:14,657 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2004/2004170/2004.170.03 to /data/auv_data/dorado/missionlogs/2004.170.03 INFO 2025-06-26 05:50:16,520 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2004.170.03 INFO 2025-06-26 05:50:16,521 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.03/ctdDriver.log (6267051 bytes) INFO 2025-06-26 05:50:16,974 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.03/ctdDriver2.log (6267661 bytes) INFO 2025-06-26 05:50:17,438 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.03/gps.log (33908 bytes) INFO 2025-06-26 05:50:17,450 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.03/hydroscatlog.log (4273454 bytes) INFO 2025-06-26 05:50:17,953 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.03/navigation.log (13880107 bytes) INFO 2025-06-26 05:50:18,976 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.03/isuslog.log (342933 bytes) INFO 2025-06-26 05:50:19,014 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.03/parosci.log (4275734 bytes) INFO 2025-06-26 05:50:19,368 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.03/tailCone.log (4275643 bytes) INFO 2025-06-26 05:50:19,891 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2004.170.03/biolume.log (4849084 bytes) INFO 2025-06-26 05:50:20,360 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 05:50:20,612 logs2netcdfs.py download_process_logs():807 [1] Time to process: 4.09 seconds WARNING 2025-06-26 05:50:20,612 process.py download_process():196 [1] No lopc.bin file for 2004.170.03 INFO 2025-06-26 05:50:20,612 process.py calibrate():227 [1] Calibration steps for 2004.170.03 INFO 2025-06-26 05:50:20,778 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:50:20,780 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:50:21,493 calibrate.py _nudge_pos():1806 [1] 90: 0.140 0.0000702 0.0000774 1915 6.38 1.631 2.249 2004-06-18T07:28:30.704075520 INFO 2025-06-26 05:50:22,139 calibrate.py _nudge_pos():1806 [1] 159: 0.150 -0.0019357 0.0005703 11510 38.36 -7.482 2.755 2004-06-18T08:08:00.701719552 INFO 2025-06-26 05:50:22,592 calibrate.py _nudge_pos():1806 [1] 207: 0.150 -0.0050915 0.0004846 13745 45.81 -16.486 1.960 2004-06-18T08:54:36.700180480 INFO 2025-06-26 05:50:23,074 calibrate.py _nudge_pos():1806 [1] 257: 0.150 -0.0026713 0.0015855 12655 42.18 -9.398 6.965 2004-06-18T09:37:36.703438080 INFO 2025-06-26 05:50:23,510 calibrate.py _nudge_pos():1806 [1] 303: 0.150 -0.0074878 0.0027321 13905 46.35 -23.982 10.923 2004-06-18T10:24:42.699844096 INFO 2025-06-26 05:50:23,985 calibrate.py _nudge_pos():1806 [1] 353: 0.160 -0.0027690 0.0008440 5725 19.08 -21.546 8.196 2004-06-18T10:44:36.698049536 INFO 2025-06-26 05:50:24,501 calibrate.py _nudge_pos():1806 [1] 407: 0.160 0.0000008 0.0051730 13895 46.31 0.002 20.697 2004-06-18T11:31:48.704043904 INFO 2025-06-26 05:50:24,962 calibrate.py _nudge_pos():1806 [1] 455: 0.160 0.0035452 0.0045824 13474 44.91 11.725 18.906 2004-06-18T12:17:30.696204672 INFO 2025-06-26 05:50:24,999 calibrate.py _nudge_pos():1862 [1] 437: - - - 5 0.01 - - INFO 2025-06-26 05:50:24,999 calibrate.py _nudge_pos():1868 [1] Points in final series = 88967 WARNING 2025-06-26 05:50:25,073 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:50:25,728 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:50:26,392 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 12 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:50:26,913 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 12 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:50:26,915 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2004.170.03/ctd1.nc INFO 2025-06-26 05:50:26,916 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:50:26,916 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:50:26,916 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:50:27,534 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 10 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:50:28,080 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 10 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:50:28,083 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2004.170.03/ctd2.nc INFO 2025-06-26 05:50:28,084 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:50:28,085 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:50:28,085 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 05:50:28,113 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 05:50:29,096 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 05:50:29,102 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 05:50:29,103 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.170.03 ERROR 2025-06-26 05:50:29,103 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2004.170.03 INFO 2025-06-26 05:50:29,175 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2004.170.03/dorado_2004.170.03_cal.nc INFO 2025-06-26 05:50:29,260 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 05:50:29,264 process.py align():251 [1] Alignment steps for 2004.170.03 INFO 2025-06-26 05:50:29,291 align.py process_cal():139 [1] Processing dorado_2004.170.03_cal.nc from /data/auv_data/dorado/missionnetcdfs/2004.170.03 INFO 2025-06-26 05:50:29,318 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:50:29,322 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:50:29,391 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:50:29,395 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:50:29,460 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:50:29,464 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:50:29,502 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:50:29,502 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:50:29,528 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:50:29,532 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:50:29,594 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.170.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:50:29,598 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:29,653 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.170.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:50:29,656 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:29,712 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2004.170.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:50:29,715 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:29,771 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:29,775 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:29,830 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:29,834 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:29,890 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:29,894 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:29,957 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:29,961 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:30,016 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:30,020 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:30,075 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:30,079 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:30,134 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:30,138 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:30,195 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:30,199 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:30,255 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:30,259 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:30,315 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2004.170.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:30,318 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:30,375 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.170.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:30,379 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:30,434 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.170.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:30,438 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:30,494 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.170.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:30,499 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:30,555 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.170.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:30,559 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:30,615 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.170.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:30,619 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:30,675 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.170.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:30,679 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:30,736 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2004.170.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:50:30,739 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:50:30,802 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:50:30,842 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:50:30,883 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:50:30,925 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 05:50:30,968 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:50:31,012 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2004.170.03/dorado_2004.170.03_align.nc INFO 2025-06-26 05:50:31,087 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 05:50:31,089 process.py resample():273 [1] Resampling steps for 2004.170.03 INFO 2025-06-26 05:50:31,090 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:50:31,115 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.170.03/dorado_2004.170.03_align.nc mission netCDF file INFO 2025-06-26 05:50:31,121 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.170.03/dorado_2004.170.03_align.nc mission netCDF file INFO 2025-06-26 05:50:31,122 resample.py get_mission_start_end():1145 [1] navigation: 2004-06-18T07:21:01.304861312 to 2004-06-18T12:17:34.695930752 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:50:31,123 resample.py get_mission_start_end():1145 [1] hs2 : 2004-06-18T07:20:44.166035456 to 2004-06-18T12:17:34.675931904 (0 days 00:00:00.019998848 before mission_end) INFO 2025-06-26 05:50:31,125 resample.py get_mission_start_end():1145 [1] ctd1 : 2004-06-18T07:20:52.965432704 to 2004-06-18T12:17:34.575938944 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 05:50:31,127 resample.py get_mission_start_end():1145 [1] ctd2 : 2004-06-18T07:20:51.345543680 to 2004-06-18T12:17:34.665932672 (0 days 00:00:00.029998080 before mission_end) INFO 2025-06-26 05:50:31,128 resample.py get_mission_start_end():1145 [1] isus : 2004-06-18T07:21:55.911120640 to 2004-06-18T12:17:34.045975168 (0 days 00:00:00.649955584 before mission_end) INFO 2025-06-26 05:50:31,129 resample.py get_mission_start_end():1145 [1] biolume : 2004-06-18T07:20:39.106347776 to 2004-06-18T12:17:33.585972352 (0 days 00:00:01.109958400 before mission_end) INFO 2025-06-26 05:50:31,131 resample.py get_mission_start_end():1145 [1] tailcone : 2004-06-18T07:20:39.776336256 to 2004-06-18T12:17:34.665932672 (0 days 00:00:00.029998080 before mission_end) INFO 2025-06-26 05:50:31,131 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2004.170.03/dorado_2004.170.03_align.nc mission netCDF file INFO 2025-06-26 05:50:31,132 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,331 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,367 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,402 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,437 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,469 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,500 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,531 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,561 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,589 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,623 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,651 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,679 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,707 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,735 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,763 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,790 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,819 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,850 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,879 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,909 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,939 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,969 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,985 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:31,998 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:32,011 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:32,026 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:32,062 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 05:50:32,256 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2004.170.03/dorado_2004.170.03_1S.nc INFO 2025-06-26 05:50:33,347 create_products.py gulper_odv():401 [1] No gulper times found for 2004.170.03 INFO 2025-06-26 05:50:33,348 process.py archive():337 [1] Archiving steps for 2004.170.03 INFO 2025-06-26 05:50:33,348 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2004.170.03/dorado_2004.170.03, BASE_PATH = /data/auv_data INFO 2025-06-26 05:50:33,348 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2004.170.03/dorado_2004.170.03 files to /Volumes/AUVCTD/surveys/2004/netcdf INFO 2025-06-26 05:50:33,349 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.170.03_1S.nc INFO 2025-06-26 05:50:33,368 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.03/dorado_2004.170.03_1S.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:50:33,369 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.170.03_cal.nc INFO 2025-06-26 05:50:33,455 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.03/dorado_2004.170.03_cal.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:50:33,455 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2004/netcdf/dorado_2004.170.03_align.nc INFO 2025-06-26 05:50:33,535 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.03/dorado_2004.170.03_align.nc /Volumes/AUVCTD/surveys/2004/netcdf done. INFO 2025-06-26 05:50:33,558 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.03/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.03 done. INFO 2025-06-26 05:50:33,579 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.03/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.03 done. INFO 2025-06-26 05:50:33,583 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.03 done. INFO 2025-06-26 05:50:33,601 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.03/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.03 done. INFO 2025-06-26 05:50:33,646 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.03 done. INFO 2025-06-26 05:50:33,652 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.03/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.03 done. INFO 2025-06-26 05:50:33,670 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.03 done. INFO 2025-06-26 05:50:33,690 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.03/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.03 done. INFO 2025-06-26 05:50:33,744 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.03/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2004/2004170/2004.170.03 done. INFO 2025-06-26 05:50:33,744 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:50:33,744 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2004.170.03/dorado_2004.170.03_processing.log /Volumes/AUVCTD/surveys/2004/netcdf