INFO 2025-06-26 05:45:12,330 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:45:12,330 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled 7/12/05 - ctdToUse = ctd1 INFO 2025-06-26 05:45:12,330 process.py process_mission():449 [1] Processing BIOLUME mission 2003.338.21 by user docker_user on host 671049448ece INFO 2025-06-26 05:45:12,330 process.py download_process():165 [1] Download and processing steps for 2003.338.21 INFO 2025-06-26 05:45:12,330 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003338/2003.338.21 INFO 2025-06-26 05:45:12,330 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003338/2003.338.21 to /data/auv_data/dorado/missionlogs/2003.338.21 INFO 2025-06-26 05:45:13,262 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.338.21 INFO 2025-06-26 05:45:13,262 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.338.21/ctdDriver.log (998579 bytes) INFO 2025-06-26 05:45:13,343 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.338.21/ctdDriver2.log (998573 bytes) INFO 2025-06-26 05:45:13,425 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.338.21/gps.log (12026 bytes) INFO 2025-06-26 05:45:13,434 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.338.21/hydroscatlog.log (682634 bytes) INFO 2025-06-26 05:45:13,523 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.338.21/navigation.log (2769783 bytes) INFO 2025-06-26 05:45:13,729 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.338.21/isuslog.log (53909 bytes) INFO 2025-06-26 05:45:13,740 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.338.21/parosci.log (683318 bytes) INFO 2025-06-26 05:45:13,800 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.338.21/tailCone.log (683275 bytes) INFO 2025-06-26 05:45:13,891 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.338.21/biolume.log (777244 bytes) INFO 2025-06-26 05:45:13,969 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 05:45:14,015 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.75 seconds WARNING 2025-06-26 05:45:14,015 process.py download_process():196 [1] No lopc.bin file for 2003.338.21 INFO 2025-06-26 05:45:14,015 process.py calibrate():227 [1] Calibration steps for 2003.338.21 INFO 2025-06-26 05:45:14,084 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.338.21 INFO 2025-06-26 05:45:14,092 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:45:14,094 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:45:15,458 calibrate.py _nudge_pos():1806 [1] 161: 0.010 -0.0000203 0.0000075 15 0.05 -64.560 29.881 2003-12-04T11:00:49.833548800 INFO 2025-06-26 05:45:15,496 calibrate.py _nudge_pos():1806 [1] 165: 0.010 0.0000141 0.0000712 25 0.08 26.062 164.677 2003-12-04T11:00:57.843000192 INFO 2025-06-26 05:45:15,573 calibrate.py _nudge_pos():1806 [1] 173: 0.010 0.0178226 0.0211019 13270 44.23 59.879 88.406 2003-12-04T11:45:18.840709376 INFO 2025-06-26 05:45:15,713 calibrate.py _nudge_pos():1862 [1] 166: - - - 4 0.01 - - INFO 2025-06-26 05:45:15,713 calibrate.py _nudge_pos():1868 [1] Points in final series = 14121 WARNING 2025-06-26 05:45:15,729 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:45:15,849 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:45:15,974 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 10 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:45:16,075 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 10 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:45:16,077 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.338.21/ctd1.nc INFO 2025-06-26 05:45:16,078 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:45:16,079 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:45:16,079 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:45:16,193 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 10 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:45:16,281 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 10 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:45:16,283 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.338.21/ctd2.nc INFO 2025-06-26 05:45:16,284 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd2_salinity values to NaN INFO 2025-06-26 05:45:16,284 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:45:16,284 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 05:45:16,294 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 05:45:16,512 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 05:45:16,518 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 05:45:16,518 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.338.21 ERROR 2025-06-26 05:45:16,519 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.338.21 INFO 2025-06-26 05:45:16,533 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.338.21/dorado_2003.338.21_cal.nc INFO 2025-06-26 05:45:16,582 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 05:45:16,587 process.py align():251 [1] Alignment steps for 2003.338.21 INFO 2025-06-26 05:45:16,611 align.py process_cal():139 [1] Processing dorado_2003.338.21_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.338.21 INFO 2025-06-26 05:45:16,620 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:45:16,622 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:45:16,640 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:45:16,642 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:45:16,659 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:45:16,661 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:45:16,672 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:45:16,672 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:45:16,679 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:45:16,681 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:45:16,697 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.338.21_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:45:16,700 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:16,716 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.338.21_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:45:16,719 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:16,735 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.338.21_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:45:16,737 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:16,754 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.338.21_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:16,756 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:16,773 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.338.21_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:16,775 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:16,791 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.338.21_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:16,794 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:16,810 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.338.21_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:16,812 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:16,828 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.338.21_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:16,830 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:16,847 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.338.21_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:16,849 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:16,865 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.338.21_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:16,867 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:16,882 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.338.21_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:16,884 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:16,900 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.338.21_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:16,902 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:16,919 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.338.21_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:16,920 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:16,937 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.338.21_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:16,939 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:16,956 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.338.21_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:16,958 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:16,974 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.338.21_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:16,977 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:16,998 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.338.21_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:17,000 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:17,017 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.338.21_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:17,019 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:17,036 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.338.21_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:17,038 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:17,055 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.338.21_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:45:17,056 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:45:17,077 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:45:17,093 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:45:17,109 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:45:17,126 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 05:45:17,144 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:45:17,159 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.338.21/dorado_2003.338.21_align.nc INFO 2025-06-26 05:45:17,208 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 05:45:17,210 process.py resample():273 [1] Resampling steps for 2003.338.21 INFO 2025-06-26 05:45:17,211 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:45:17,233 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.338.21/dorado_2003.338.21_align.nc mission netCDF file INFO 2025-06-26 05:45:17,238 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.338.21/dorado_2003.338.21_align.nc mission netCDF file INFO 2025-06-26 05:45:17,239 resample.py get_mission_start_end():1145 [1] navigation: 2003-12-04T10:58:29.243179904 to 2003-12-04T11:45:33.639695488 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 05:45:17,240 resample.py get_mission_start_end():1145 [1] hs2 : 2003-12-04T10:58:11.854371200 to 2003-12-04T11:45:33.649694848 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-26 05:45:17,241 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-12-04T10:58:18.963884160 to 2003-12-04T11:45:33.649694848 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-26 05:45:17,243 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-12-04T10:58:19.003881344 to 2003-12-04T11:45:33.679692800 (0 days 00:00:00.019998592 before mission_end) INFO 2025-06-26 05:45:17,244 resample.py get_mission_start_end():1145 [1] isus : 2003-12-04T10:59:23.619454848 to 2003-12-04T11:45:33.369714048 (0 days 00:00:00.329977344 before mission_end) INFO 2025-06-26 05:45:17,245 resample.py get_mission_start_end():1145 [1] biolume : 2003-12-04T10:58:06.824681344 to 2003-12-04T11:45:32.569734528 (0 days 00:00:01.129956864 before mission_end) INFO 2025-06-26 05:45:17,246 resample.py get_mission_start_end():1145 [1] tailcone : 2003-12-04T10:58:08.944570496 to 2003-12-04T11:45:33.699691392 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:45:17,247 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.338.21/dorado_2003.338.21_align.nc mission netCDF file INFO 2025-06-26 05:45:17,247 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,303 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,316 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,328 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,339 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,351 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,362 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,373 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,384 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,394 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,404 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,414 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,423 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,433 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,442 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,452 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,462 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,474 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,485 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,495 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,506 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,517 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,527 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,536 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,545 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,554 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,564 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,578 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 05:45:17,688 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.338.21/dorado_2003.338.21_1S.nc INFO 2025-06-26 05:45:18,426 create_products.py gulper_odv():401 [1] No gulper times found for 2003.338.21 INFO 2025-06-26 05:45:18,426 process.py archive():337 [1] Archiving steps for 2003.338.21 INFO 2025-06-26 05:45:18,426 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.338.21/dorado_2003.338.21, BASE_PATH = /data/auv_data INFO 2025-06-26 05:45:18,426 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.338.21/dorado_2003.338.21 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:45:18,427 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.338.21_1S.nc INFO 2025-06-26 05:45:18,436 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.21/dorado_2003.338.21_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:45:18,437 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.338.21_cal.nc INFO 2025-06-26 05:45:18,455 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.21/dorado_2003.338.21_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:45:18,456 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.338.21_align.nc INFO 2025-06-26 05:45:18,473 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.21/dorado_2003.338.21_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:45:18,484 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.21/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003338/2003.338.21 done. INFO 2025-06-26 05:45:18,495 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.21/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003338/2003.338.21 done. INFO 2025-06-26 05:45:18,500 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.21/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003338/2003.338.21 done. INFO 2025-06-26 05:45:18,508 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.21/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003338/2003.338.21 done. INFO 2025-06-26 05:45:18,521 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.21/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003338/2003.338.21 done. INFO 2025-06-26 05:45:18,526 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.21/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003338/2003.338.21 done. INFO 2025-06-26 05:45:18,533 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.21/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003338/2003.338.21 done. INFO 2025-06-26 05:45:18,542 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.21/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003338/2003.338.21 done. INFO 2025-06-26 05:45:18,555 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.21/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003338/2003.338.21 done. INFO 2025-06-26 05:45:18,555 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:45:18,556 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.338.21/dorado_2003.338.21_processing.log /Volumes/AUVCTD/surveys/2003/netcdf