INFO 2025-06-26 05:44:15,946 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:44:15,946 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled 7/12/05 - ctdToUse = ctd1 INFO 2025-06-26 05:44:15,947 process.py process_mission():449 [1] Processing BIOLUME mission 2003.337.04 by user docker_user on host 671049448ece INFO 2025-06-26 05:44:15,947 process.py download_process():165 [1] Download and processing steps for 2003.337.04 INFO 2025-06-26 05:44:15,947 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003337/2003.337.04 INFO 2025-06-26 05:44:15,947 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003337/2003.337.04 to /data/auv_data/dorado/missionlogs/2003.337.04 INFO 2025-06-26 05:44:18,114 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.337.04 INFO 2025-06-26 05:44:18,114 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.337.04/ctdDriver.log (5596051 bytes) INFO 2025-06-26 05:44:18,548 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.337.04/ctdDriver2.log (5596133 bytes) INFO 2025-06-26 05:44:18,973 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.337.04/gps.log (29666 bytes) INFO 2025-06-26 05:44:18,984 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.337.04/hydroscatlog.log (3818294 bytes) INFO 2025-06-26 05:44:19,436 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.337.04/navigation.log (15577403 bytes) INFO 2025-06-26 05:44:20,602 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.337.04/isuslog.log (307157 bytes) INFO 2025-06-26 05:44:20,636 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.337.04/parosci.log (3819878 bytes) INFO 2025-06-26 05:44:20,970 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.337.04/tailCone.log (3819643 bytes) INFO 2025-06-26 05:44:21,458 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.337.04/biolume.log (4332556 bytes) INFO 2025-06-26 05:44:21,892 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 05:44:22,120 logs2netcdfs.py download_process_logs():807 [1] Time to process: 4.01 seconds WARNING 2025-06-26 05:44:22,120 process.py download_process():196 [1] No lopc.bin file for 2003.337.04 INFO 2025-06-26 05:44:22,120 process.py calibrate():227 [1] Calibration steps for 2003.337.04 INFO 2025-06-26 05:44:22,272 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.337.04 INFO 2025-06-26 05:44:22,292 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:44:22,293 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:44:23,747 calibrate.py _nudge_pos():1806 [1] 171: 0.150 -0.0076365 0.0051725 12300 41.00 -27.588 23.379 2003-12-03T05:32:35.023753216 INFO 2025-06-26 05:44:24,317 calibrate.py _nudge_pos():1806 [1] 230: 0.150 -0.0000211 0.0000170 20 0.06 -49.300 49.792 2003-12-03T05:33:37.029505536 INFO 2025-06-26 05:44:24,365 calibrate.py _nudge_pos():1806 [1] 235: 0.150 -0.0083267 0.0042334 12930 43.10 -28.626 18.202 2003-12-03T06:16:47.032078208 INFO 2025-06-26 05:44:24,857 calibrate.py _nudge_pos():1806 [1] 286: 0.160 -0.0000141 0.0000361 30 0.10 -21.611 69.182 2003-12-03T06:17:43.028242048 INFO 2025-06-26 05:44:24,972 calibrate.py _nudge_pos():1806 [1] 298: 0.150 -0.0132580 0.0062892 13555 45.18 -43.491 25.794 2003-12-03T07:03:05.031772160 INFO 2025-06-26 05:44:25,449 calibrate.py _nudge_pos():1806 [1] 348: 0.170 -0.0155386 0.0048546 13505 45.01 -51.178 19.984 2003-12-03T07:48:55.023384832 INFO 2025-06-26 05:44:25,809 calibrate.py _nudge_pos():1806 [1] 386: 0.160 0.0000112 0.0000028 30 0.10 17.201 5.386 2003-12-03T07:49:38.030438656 INFO 2025-06-26 05:44:25,885 calibrate.py _nudge_pos():1806 [1] 394: 0.160 -0.0000635 0.0000492 15 0.05 -201.724 195.264 2003-12-03T07:49:48.029753600 INFO 2025-06-26 05:44:25,960 calibrate.py _nudge_pos():1806 [1] 402: 0.170 -0.0108743 0.0017804 13580 45.26 -35.633 7.288 2003-12-03T08:35:12.023147392 INFO 2025-06-26 05:44:26,592 calibrate.py _nudge_pos():1806 [1] 468: 0.180 -0.0069729 -0.0012007 11245 37.48 -27.605 -5.936 2003-12-03T09:13:47.024558720 INFO 2025-06-26 05:44:26,723 calibrate.py _nudge_pos():1862 [1] 460: - - - 5 0.01 - - INFO 2025-06-26 05:44:26,724 calibrate.py _nudge_pos():1868 [1] Points in final series = 79468 WARNING 2025-06-26 05:44:26,788 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:44:27,364 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:44:28,014 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:44:28,473 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:44:28,475 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.337.04/ctd1.nc INFO 2025-06-26 05:44:28,476 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:44:28,477 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:44:28,477 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:44:29,039 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:44:29,513 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:44:29,515 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.337.04/ctd2.nc INFO 2025-06-26 05:44:29,516 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:44:29,517 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:44:29,517 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 05:44:29,545 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 05:44:30,367 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 05:44:30,373 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 05:44:30,373 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.337.04 ERROR 2025-06-26 05:44:30,373 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.337.04 INFO 2025-06-26 05:44:30,437 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.337.04/dorado_2003.337.04_cal.nc INFO 2025-06-26 05:44:30,517 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 05:44:30,521 process.py align():251 [1] Alignment steps for 2003.337.04 INFO 2025-06-26 05:44:30,551 align.py process_cal():139 [1] Processing dorado_2003.337.04_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.337.04 INFO 2025-06-26 05:44:30,576 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:44:30,579 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:44:30,641 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:44:30,645 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:44:30,704 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:44:30,708 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:44:30,744 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:44:30,744 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:44:30,767 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:44:30,771 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:44:30,828 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.337.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:44:30,832 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:30,884 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.337.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:44:30,887 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:30,939 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.337.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:44:30,943 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:30,995 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.337.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:30,998 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:31,052 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.337.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:31,056 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:31,108 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.337.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:31,112 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:31,164 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.337.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:31,168 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:31,220 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.337.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:31,224 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:31,276 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.337.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:31,280 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:31,333 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.337.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:31,337 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:31,391 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.337.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:31,396 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:31,448 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.337.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:31,452 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:31,504 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.337.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:31,508 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:31,560 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.337.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:31,564 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:31,617 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.337.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:31,621 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:31,674 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.337.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:31,678 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:31,730 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.337.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:31,735 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:31,787 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.337.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:31,791 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:31,844 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.337.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:31,848 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:31,901 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.337.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:44:31,905 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:44:31,964 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:44:32,002 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:44:32,041 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:44:32,082 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 05:44:32,123 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:44:32,165 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.337.04/dorado_2003.337.04_align.nc INFO 2025-06-26 05:44:32,238 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 05:44:32,240 process.py resample():273 [1] Resampling steps for 2003.337.04 INFO 2025-06-26 05:44:32,240 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:44:32,267 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.337.04/dorado_2003.337.04_align.nc mission netCDF file INFO 2025-06-26 05:44:32,272 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.337.04/dorado_2003.337.04_align.nc mission netCDF file INFO 2025-06-26 05:44:32,274 resample.py get_mission_start_end():1145 [1] navigation: 2003-12-03T04:49:07.632371712 to 2003-12-03T09:14:01.023599872 (0 days 00:00:00.069995136 before mission_end) INFO 2025-06-26 05:44:32,275 resample.py get_mission_start_end():1145 [1] hs2 : 2003-12-03T04:48:49.683601280 to 2003-12-03T09:14:00.923606656 (0 days 00:00:00.169988352 before mission_end) INFO 2025-06-26 05:44:32,277 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-12-03T04:49:05.512516992 to 2003-12-03T09:14:00.933606016 (0 days 00:00:00.159988992 before mission_end) INFO 2025-06-26 05:44:32,279 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-12-03T04:49:05.272533376 to 2003-12-03T09:14:00.933606016 (0 days 00:00:00.159988992 before mission_end) INFO 2025-06-26 05:44:32,280 resample.py get_mission_start_end():1145 [1] isus : 2003-12-03T04:50:02.248630272 to 2003-12-03T09:14:00.323647744 (0 days 00:00:00.769947264 before mission_end) INFO 2025-06-26 05:44:32,281 resample.py get_mission_start_end():1145 [1] biolume : 2003-12-03T04:48:44.843898496 to 2003-12-03T09:14:00.483602560 (0 days 00:00:00.609992448 before mission_end) INFO 2025-06-26 05:44:32,283 resample.py get_mission_start_end():1145 [1] tailcone : 2003-12-03T04:48:47.113777280 to 2003-12-03T09:14:01.093595008 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:44:32,283 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.337.04/dorado_2003.337.04_align.nc mission netCDF file INFO 2025-06-26 05:44:32,284 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:32,467 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:32,500 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:32,532 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:32,567 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:32,597 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:32,628 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:32,658 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:32,686 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:32,712 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:32,738 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:32,764 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:32,789 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:32,815 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:32,840 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:32,865 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:32,889 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:32,916 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:32,945 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:32,974 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:33,000 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:33,028 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:33,055 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:33,069 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:33,081 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:33,093 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:33,107 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:33,138 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 05:44:33,321 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.337.04/dorado_2003.337.04_1S.nc INFO 2025-06-26 05:44:34,412 create_products.py gulper_odv():401 [1] No gulper times found for 2003.337.04 INFO 2025-06-26 05:44:34,413 process.py archive():337 [1] Archiving steps for 2003.337.04 INFO 2025-06-26 05:44:34,413 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.337.04/dorado_2003.337.04, BASE_PATH = /data/auv_data INFO 2025-06-26 05:44:34,414 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.337.04/dorado_2003.337.04 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:44:34,415 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.337.04_1S.nc INFO 2025-06-26 05:44:34,432 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.337.04/dorado_2003.337.04_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:44:34,433 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.337.04_cal.nc INFO 2025-06-26 05:44:34,500 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.337.04/dorado_2003.337.04_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:44:34,501 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.337.04_align.nc INFO 2025-06-26 05:44:34,570 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.337.04/dorado_2003.337.04_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:44:34,595 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.337.04/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003337/2003.337.04 done. INFO 2025-06-26 05:44:34,617 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.337.04/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003337/2003.337.04 done. INFO 2025-06-26 05:44:34,622 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.337.04/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003337/2003.337.04 done. INFO 2025-06-26 05:44:34,637 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.337.04/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003337/2003.337.04 done. INFO 2025-06-26 05:44:34,687 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.337.04/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003337/2003.337.04 done. INFO 2025-06-26 05:44:34,693 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.337.04/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003337/2003.337.04 done. INFO 2025-06-26 05:44:34,709 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.337.04/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003337/2003.337.04 done. INFO 2025-06-26 05:44:34,727 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.337.04/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003337/2003.337.04 done. INFO 2025-06-26 05:44:34,781 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.337.04/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003337/2003.337.04 done. INFO 2025-06-26 05:44:34,781 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:44:34,781 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.337.04/dorado_2003.337.04_processing.log /Volumes/AUVCTD/surveys/2003/netcdf