INFO 2025-06-26 05:40:47,293 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:40:47,293 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Re-portaled 7/11/05 - ctdToUse = ctd1 INFO 2025-06-26 05:40:47,293 process.py process_mission():449 [1] Processing AUVCTD mission 2003.241.02 by user docker_user on host 671049448ece INFO 2025-06-26 05:40:47,293 process.py download_process():165 [1] Download and processing steps for 2003.241.02 INFO 2025-06-26 05:40:47,293 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003241/2003.241.02 INFO 2025-06-26 05:40:47,295 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003241/2003.241.02 to /data/auv_data/dorado/missionlogs/2003.241.02 INFO 2025-06-26 05:40:50,384 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.241.02 INFO 2025-06-26 05:40:50,385 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.241.02/ctdDriver.log (6371419 bytes) INFO 2025-06-26 05:40:50,845 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.241.02/ctdDriver2.log (6371325 bytes) INFO 2025-06-26 05:40:51,325 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.241.02/gps.log (39506 bytes) INFO 2025-06-26 05:40:51,337 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.241.02/hydroscatlog.log (4346174 bytes) INFO 2025-06-26 05:40:51,854 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.241.02/navigation.log (17736594 bytes) INFO 2025-06-26 05:40:53,112 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.241.02/isuslog.log (348789 bytes) INFO 2025-06-26 05:40:53,158 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.241.02/parosci.log (4348742 bytes) INFO 2025-06-26 05:40:53,526 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.241.02/tailCone.log (4347931 bytes) WARNING 2025-06-26 05:40:53,527 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.241.02/tailCone.log INFO 2025-06-26 05:40:53,527 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.14 seconds WARNING 2025-06-26 05:40:53,527 process.py download_process():196 [1] No lopc.bin file for 2003.241.02 INFO 2025-06-26 05:40:53,527 process.py calibrate():227 [1] Calibration steps for 2003.241.02 INFO 2025-06-26 05:40:53,659 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.241.02 INFO 2025-06-26 05:40:53,680 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:40:53,682 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:40:55,131 calibrate.py _nudge_pos():1806 [1] 167: 0.010 0.0014245 -0.0049561 11436 38.12 5.551 -24.093 2003-08-29T16:32:01.145202944 INFO 2025-06-26 05:40:55,576 calibrate.py _nudge_pos():1806 [1] 214: 0.160 0.0031311 -0.0064521 11410 38.03 12.228 -31.437 2003-08-29T17:10:49.145724032 INFO 2025-06-26 05:40:56,086 calibrate.py _nudge_pos():1806 [1] 268: 0.150 0.0000198 -0.0000280 55 0.18 16.329 -28.755 2003-08-29T17:11:53.151339392 INFO 2025-06-26 05:40:56,144 calibrate.py _nudge_pos():1806 [1] 274: 0.110 0.0041474 -0.0077772 11656 38.85 15.854 -37.094 2003-08-29T17:50:49.351298688 INFO 2025-06-26 05:40:56,740 calibrate.py _nudge_pos():1806 [1] 336: 0.060 0.0043720 -0.0066034 11481 38.27 16.966 -31.976 2003-08-29T18:30:07.549751040 INFO 2025-06-26 05:40:57,351 calibrate.py _nudge_pos():1806 [1] 400: 0.010 0.0029739 -0.0054155 11416 38.05 11.605 -26.373 2003-08-29T19:09:13.749025408 INFO 2025-06-26 05:40:58,122 calibrate.py _nudge_pos():1806 [1] 481: 0.160 0.0024511 -0.0034962 11420 38.06 9.560 -17.020 2003-08-29T19:48:37.747080448 INFO 2025-06-26 05:40:58,521 calibrate.py _nudge_pos():1806 [1] 522: 0.170 0.0000265 -0.0000273 20 0.06 62.087 -79.843 2003-08-29T19:49:21.744066432 INFO 2025-06-26 05:40:58,671 calibrate.py _nudge_pos():1806 [1] 537: 0.170 0.0000051 -0.0001080 20 0.06 11.862 -315.891 2003-08-29T19:49:39.742833536 INFO 2025-06-26 05:40:58,734 calibrate.py _nudge_pos():1806 [1] 543: 0.110 0.0015501 -0.0032139 10976 36.58 6.290 -16.279 2003-08-29T20:26:19.942109440 INFO 2025-06-26 05:40:59,406 calibrate.py _nudge_pos():1806 [1] 612: 0.020 0.0005539 -0.0008663 7521 25.07 3.280 -6.404 2003-08-29T20:52:32.144406144 INFO 2025-06-26 05:40:59,729 calibrate.py _nudge_pos():1862 [1] 625: - - - 4 0.01 - - INFO 2025-06-26 05:40:59,729 calibrate.py _nudge_pos():1868 [1] Points in final series = 90487 WARNING 2025-06-26 05:40:59,803 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:41:00,461 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:41:01,129 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:41:01,653 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:41:01,655 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.241.02/ctd1.nc INFO 2025-06-26 05:41:01,656 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:41:01,656 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:41:01,656 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:41:02,285 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:41:02,815 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:41:02,818 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.241.02/ctd2.nc INFO 2025-06-26 05:41:02,819 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:41:02,819 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:41:02,820 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:41:02,834 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.241.02 ERROR 2025-06-26 05:41:02,834 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.241.02 ERROR 2025-06-26 05:41:02,835 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.241.02 ERROR 2025-06-26 05:41:02,835 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.241.02 INFO 2025-06-26 05:41:02,835 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.241.02/dorado_2003.241.02_cal.nc INFO 2025-06-26 05:41:02,910 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:41:02,913 process.py align():251 [1] Alignment steps for 2003.241.02 INFO 2025-06-26 05:41:02,937 align.py process_cal():139 [1] Processing dorado_2003.241.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.241.02 INFO 2025-06-26 05:41:02,964 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:41:02,968 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:41:03,035 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:41:03,040 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:41:03,106 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:41:03,110 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:41:03,150 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:41:03,150 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:41:03,176 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:41:03,181 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:41:03,246 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.241.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:41:03,250 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:03,308 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.241.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:41:03,312 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:03,369 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.241.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:41:03,373 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:03,434 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.241.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:03,438 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:03,497 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.241.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:03,501 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:03,557 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.241.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:03,562 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:03,618 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.241.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:03,622 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:03,680 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.241.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:03,684 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:03,742 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.241.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:03,746 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:03,804 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.241.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:03,808 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:03,864 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.241.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:03,868 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:03,925 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.241.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:03,929 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:03,986 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.241.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:03,989 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:04,047 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.241.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:04,052 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:04,109 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.241.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:04,113 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:04,171 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.241.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:04,175 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:04,233 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.241.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:04,237 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:04,295 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.241.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:04,299 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:04,356 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.241.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:04,360 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:04,418 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.241.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:41:04,422 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:41:04,485 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:41:04,526 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:41:04,568 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:41:04,582 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.241.02/dorado_2003.241.02_align.nc INFO 2025-06-26 05:41:04,643 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:41:04,645 process.py resample():273 [1] Resampling steps for 2003.241.02 INFO 2025-06-26 05:41:04,646 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:41:04,666 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.241.02/dorado_2003.241.02_align.nc mission netCDF file INFO 2025-06-26 05:41:04,670 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.241.02/dorado_2003.241.02_align.nc mission netCDF file INFO 2025-06-26 05:41:04,671 resample.py get_mission_start_end():1145 [1] navigation: 2003-08-29T15:51:28.751833472 to 2003-08-29T20:53:05.942091008 (0 days 00:00:00.179987712 before mission_end) INFO 2025-06-26 05:41:04,673 resample.py get_mission_start_end():1145 [1] hs2 : 2003-08-29T15:51:10.633074688 to 2003-08-29T20:53:06.052083328 (0 days 00:00:00.069995392 before mission_end) INFO 2025-06-26 05:41:04,674 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-08-29T15:51:26.391995136 to 2003-08-29T20:53:06.122078720 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:41:04,676 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-08-29T15:51:26.661976576 to 2003-08-29T20:53:06.122078720 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:41:04,677 resample.py get_mission_start_end():1145 [1] isus : 2003-08-29T15:52:23.348093312 to 2003-08-29T20:53:04.842166272 (0 days 00:00:01.279912448 before mission_end) INFO 2025-06-26 05:41:04,678 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.241.02/dorado_2003.241.02_align.nc mission netCDF file INFO 2025-06-26 05:41:04,678 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:04,878 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:04,914 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:04,950 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:04,986 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:05,019 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:05,050 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:05,081 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:05,110 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:05,138 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:05,165 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:05,192 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:05,218 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:05,246 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:05,273 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:05,301 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:05,328 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:05,358 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:05,389 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:05,419 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:05,449 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:05,479 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:05,509 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:05,525 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:05,538 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:05,551 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:41:05,738 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.241.02/dorado_2003.241.02_1S.nc INFO 2025-06-26 05:41:06,865 create_products.py gulper_odv():401 [1] No gulper times found for 2003.241.02 INFO 2025-06-26 05:41:06,865 process.py archive():337 [1] Archiving steps for 2003.241.02 INFO 2025-06-26 05:41:06,865 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.241.02/dorado_2003.241.02, BASE_PATH = /data/auv_data INFO 2025-06-26 05:41:06,866 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.241.02/dorado_2003.241.02 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:41:06,867 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.241.02_1S.nc INFO 2025-06-26 05:41:06,885 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.241.02/dorado_2003.241.02_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:41:06,886 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.241.02_cal.nc INFO 2025-06-26 05:41:06,962 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.241.02/dorado_2003.241.02_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:41:06,963 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.241.02_align.nc INFO 2025-06-26 05:41:07,031 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.241.02/dorado_2003.241.02_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:41:07,056 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.241.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003241/2003.241.02 done. INFO 2025-06-26 05:41:07,078 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.241.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003241/2003.241.02 done. INFO 2025-06-26 05:41:07,082 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.241.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003241/2003.241.02 done. INFO 2025-06-26 05:41:07,099 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.241.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003241/2003.241.02 done. INFO 2025-06-26 05:41:07,155 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.241.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003241/2003.241.02 done. INFO 2025-06-26 05:41:07,162 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.241.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003241/2003.241.02 done. INFO 2025-06-26 05:41:07,180 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.241.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003241/2003.241.02 done. INFO 2025-06-26 05:41:07,180 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:41:07,181 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.241.02/dorado_2003.241.02_processing.log /Volumes/AUVCTD/surveys/2003/netcdf