INFO 2025-06-26 05:40:18,243 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:40:18,243 process.py process_mission():434 [1] dorado_info[mission]["comment"] = OCCO2003237: missions {03,04}: Re-portaled 7/11/05 - ctdToUse = ctd1 INFO 2025-06-26 05:40:18,243 process.py process_mission():449 [1] Processing OCCO mission 2003.237.04 by user docker_user on host 671049448ece INFO 2025-06-26 05:40:18,243 process.py download_process():165 [1] Download and processing steps for 2003.237.04 INFO 2025-06-26 05:40:18,243 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003237/2003.237.04 INFO 2025-06-26 05:40:18,243 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003237/2003.237.04 to /data/auv_data/dorado/missionlogs/2003.237.04 INFO 2025-06-26 05:40:20,653 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.237.04 INFO 2025-06-26 05:40:20,653 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.237.04/ctdDriver.log (5723563 bytes) INFO 2025-06-26 05:40:21,117 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.237.04/ctdDriver2.log (5723469 bytes) INFO 2025-06-26 05:40:21,562 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.237.04/gps.log (35006 bytes) INFO 2025-06-26 05:40:21,573 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.237.04/hydroscatlog.log (3904814 bytes) INFO 2025-06-26 05:40:22,044 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.237.04/navigation.log (15933198 bytes) INFO 2025-06-26 05:40:23,252 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.237.04/isuslog.log (311989 bytes) INFO 2025-06-26 05:40:23,286 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.237.04/parosci.log (3907094 bytes) INFO 2025-06-26 05:40:23,619 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.237.04/tailCone.log (3906523 bytes) WARNING 2025-06-26 05:40:23,620 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.237.04/tailCone.log INFO 2025-06-26 05:40:23,620 logs2netcdfs.py download_process_logs():807 [1] Time to process: 2.97 seconds WARNING 2025-06-26 05:40:23,620 process.py download_process():196 [1] No lopc.bin file for 2003.237.04 INFO 2025-06-26 05:40:23,620 process.py calibrate():227 [1] Calibration steps for 2003.237.04 INFO 2025-06-26 05:40:23,746 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.237.04 INFO 2025-06-26 05:40:23,765 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:40:23,767 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:40:25,248 calibrate.py _nudge_pos():1806 [1] 171: 0.170 -0.0037480 -0.0024407 12360 41.20 -13.488 -10.978 2003-08-25T17:28:04.446714752 INFO 2025-06-26 05:40:25,682 calibrate.py _nudge_pos():1806 [1] 216: 0.160 0.0000235 -0.0000387 50 0.16 21.289 -43.853 2003-08-25T17:28:58.453015040 INFO 2025-06-26 05:40:25,837 calibrate.py _nudge_pos():1806 [1] 232: 0.060 -0.0024012 -0.0011403 6916 23.05 -15.441 -9.167 2003-08-25T17:52:16.647232256 INFO 2025-06-26 05:40:26,366 calibrate.py _nudge_pos():1806 [1] 287: 0.190 0.0001604 0.0000968 9240 30.80 0.772 0.582 2003-08-25T18:23:58.646936320 INFO 2025-06-26 05:40:26,995 calibrate.py _nudge_pos():1806 [1] 352: 0.110 0.0001284 0.0001342 9131 30.43 0.626 0.817 2003-08-25T18:55:28.847448704 INFO 2025-06-26 05:40:27,503 calibrate.py _nudge_pos():1806 [1] 405: 0.060 -0.0033482 -0.0021920 12491 41.63 -11.924 -9.756 2003-08-25T19:37:59.052747776 INFO 2025-06-26 05:40:28,069 calibrate.py _nudge_pos():1806 [1] 463: 0.010 -0.0029680 -0.0013993 10246 34.15 -12.882 -7.593 2003-08-25T20:13:05.248463360 INFO 2025-06-26 05:40:28,516 calibrate.py _nudge_pos():1806 [1] 509: 0.140 0.0000733 0.0000939 10035 33.45 0.325 0.520 2003-08-25T20:47:17.247891840 INFO 2025-06-26 05:40:28,901 calibrate.py _nudge_pos():1806 [1] 548: 0.040 0.0001360 0.0000625 8121 27.07 0.745 0.428 2003-08-25T21:14:59.454022912 INFO 2025-06-26 05:40:29,125 calibrate.py _nudge_pos():1862 [1] 549: - - - 0 0.00 - - INFO 2025-06-26 05:40:29,126 calibrate.py _nudge_pos():1868 [1] Points in final series = 81214 WARNING 2025-06-26 05:40:29,193 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:40:29,787 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:40:30,394 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:40:30,882 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:40:30,884 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.237.04/ctd1.nc INFO 2025-06-26 05:40:30,885 calibrate.py _range_qc_combined_nc():898 [1] Setting 9 ctd1_salinity values to NaN INFO 2025-06-26 05:40:30,885 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:40:30,885 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:40:31,535 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:40:32,013 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:40:32,015 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.237.04/ctd2.nc INFO 2025-06-26 05:40:32,016 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd2_salinity values to NaN INFO 2025-06-26 05:40:32,017 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:40:32,017 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:40:32,031 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.237.04 ERROR 2025-06-26 05:40:32,031 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.237.04 ERROR 2025-06-26 05:40:32,031 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.237.04 ERROR 2025-06-26 05:40:32,031 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.237.04 INFO 2025-06-26 05:40:32,032 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.237.04/dorado_2003.237.04_cal.nc INFO 2025-06-26 05:40:32,103 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:40:32,106 process.py align():251 [1] Alignment steps for 2003.237.04 INFO 2025-06-26 05:40:32,130 align.py process_cal():139 [1] Processing dorado_2003.237.04_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.237.04 INFO 2025-06-26 05:40:32,156 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:40:32,159 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:40:32,222 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:40:32,226 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:40:32,286 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:40:32,290 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:40:32,325 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:40:32,325 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:40:32,350 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:40:32,354 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:40:32,411 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.237.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:40:32,415 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:32,469 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.237.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:40:32,473 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:32,525 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.237.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:40:32,529 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:32,581 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.237.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:32,585 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:32,636 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.237.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:32,641 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:32,692 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.237.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:32,696 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:32,748 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.237.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:32,752 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:32,804 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.237.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:32,808 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:32,861 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.237.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:32,865 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:32,917 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.237.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:32,921 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:32,973 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.237.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:32,978 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:33,030 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.237.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:33,034 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:33,088 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.237.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:33,091 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:33,144 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.237.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:33,148 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:33,202 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.237.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:33,206 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:33,259 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.237.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:33,263 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:33,315 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.237.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:33,319 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:33,371 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.237.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:33,376 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:33,428 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.237.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:33,432 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:33,484 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.237.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:33,488 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:33,546 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:40:33,584 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:40:33,622 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:40:33,636 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.237.04/dorado_2003.237.04_align.nc INFO 2025-06-26 05:40:33,695 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:40:33,698 process.py resample():273 [1] Resampling steps for 2003.237.04 INFO 2025-06-26 05:40:33,698 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:40:33,718 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.237.04/dorado_2003.237.04_align.nc mission netCDF file INFO 2025-06-26 05:40:33,723 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.237.04/dorado_2003.237.04_align.nc mission netCDF file INFO 2025-06-26 05:40:33,724 resample.py get_mission_start_end():1145 [1] navigation: 2003-08-25T16:44:24.466195840 to 2003-08-25T21:15:21.542509824 (0 days 00:00:00.069995136 before mission_end) INFO 2025-06-26 05:40:33,725 resample.py get_mission_start_end():1145 [1] hs2 : 2003-08-25T16:44:06.847402752 to 2003-08-25T21:15:21.612504960 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:40:33,727 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-08-25T16:44:22.896303360 to 2003-08-25T21:15:21.562508288 (0 days 00:00:00.049996672 before mission_end) INFO 2025-06-26 05:40:33,728 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-08-25T16:44:23.156285568 to 2003-08-25T21:15:21.552509056 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 05:40:33,730 resample.py get_mission_start_end():1145 [1] isus : 2003-08-25T16:45:19.202446080 to 2003-08-25T21:15:20.442585088 (0 days 00:00:01.169919872 before mission_end) INFO 2025-06-26 05:40:33,730 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.237.04/dorado_2003.237.04_align.nc mission netCDF file INFO 2025-06-26 05:40:33,730 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:33,916 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:33,952 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:33,985 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,018 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,049 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,080 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,109 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,137 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,162 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,189 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,216 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,242 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,268 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,294 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,321 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,347 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,377 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,406 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,435 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,464 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,492 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,521 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,535 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,549 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,563 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:34,748 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.237.04/dorado_2003.237.04_1S.nc INFO 2025-06-26 05:40:35,872 create_products.py gulper_odv():401 [1] No gulper times found for 2003.237.04 INFO 2025-06-26 05:40:35,872 process.py archive():337 [1] Archiving steps for 2003.237.04 INFO 2025-06-26 05:40:35,872 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.237.04/dorado_2003.237.04, BASE_PATH = /data/auv_data INFO 2025-06-26 05:40:35,873 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.237.04/dorado_2003.237.04 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:40:35,874 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.237.04_1S.nc INFO 2025-06-26 05:40:35,891 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.237.04/dorado_2003.237.04_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:40:35,891 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.237.04_cal.nc INFO 2025-06-26 05:40:35,958 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.237.04/dorado_2003.237.04_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:40:35,959 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.237.04_align.nc INFO 2025-06-26 05:40:36,025 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.237.04/dorado_2003.237.04_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:40:36,051 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.237.04/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003237/2003.237.04 done. INFO 2025-06-26 05:40:36,076 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.237.04/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003237/2003.237.04 done. INFO 2025-06-26 05:40:36,082 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.237.04/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003237/2003.237.04 done. INFO 2025-06-26 05:40:36,101 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.237.04/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003237/2003.237.04 done. INFO 2025-06-26 05:40:36,156 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.237.04/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003237/2003.237.04 done. INFO 2025-06-26 05:40:36,163 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.237.04/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003237/2003.237.04 done. INFO 2025-06-26 05:40:36,181 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.237.04/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003237/2003.237.04 done. INFO 2025-06-26 05:40:36,181 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:40:36,181 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.237.04/dorado_2003.237.04_processing.log /Volumes/AUVCTD/surveys/2003/netcdf