INFO 2025-06-26 05:39:54,541 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:39:54,542 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Re-portaled 7/8/05 - ctdToUse = ctd1 INFO 2025-06-26 05:39:54,542 process.py process_mission():449 [1] Processing AUVCTD mission 2003.234.02 by user docker_user on host 671049448ece INFO 2025-06-26 05:39:54,542 process.py download_process():165 [1] Download and processing steps for 2003.234.02 INFO 2025-06-26 05:39:54,542 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003234/2003.234.02 INFO 2025-06-26 05:39:54,542 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003234/2003.234.02 to /data/auv_data/dorado/missionlogs/2003.234.02 INFO 2025-06-26 05:39:56,714 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.234.02 INFO 2025-06-26 05:39:56,715 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.234.02/ctdDriver.log (5329763 bytes) INFO 2025-06-26 05:39:57,114 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.234.02/ctdDriver2.log (5329581 bytes) INFO 2025-06-26 05:39:57,520 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.234.02/gps.log (31646 bytes) INFO 2025-06-26 05:39:57,531 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.234.02/hydroscatlog.log (3636494 bytes) INFO 2025-06-26 05:39:57,950 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.234.02/navigation.log (14837166 bytes) INFO 2025-06-26 05:39:59,031 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.234.02/isuslog.log (292117 bytes) INFO 2025-06-26 05:39:59,063 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.234.02/parosci.log (3638630 bytes) INFO 2025-06-26 05:39:59,367 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.234.02/tailCone.log (3637915 bytes) WARNING 2025-06-26 05:39:59,367 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.234.02/tailCone.log INFO 2025-06-26 05:39:59,367 logs2netcdfs.py download_process_logs():807 [1] Time to process: 2.65 seconds WARNING 2025-06-26 05:39:59,367 process.py download_process():196 [1] No lopc.bin file for 2003.234.02 INFO 2025-06-26 05:39:59,367 process.py calibrate():227 [1] Calibration steps for 2003.234.02 INFO 2025-06-26 05:39:59,486 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.234.02 INFO 2025-06-26 05:39:59,504 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:39:59,506 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:40:01,083 calibrate.py _nudge_pos():1806 [1] 180: 0.180 -0.0002054 0.0002214 11945 39.81 -0.764 1.030 2003-08-22T17:15:00.368310912 INFO 2025-06-26 05:40:01,510 calibrate.py _nudge_pos():1806 [1] 224: 0.180 0.0000388 0.0000425 35 0.11 50.690 69.549 2003-08-22T17:15:50.364885888 INFO 2025-06-26 05:40:01,693 calibrate.py _nudge_pos():1806 [1] 243: 0.140 -0.0002916 0.0001963 12291 40.97 -1.055 0.888 2003-08-22T17:57:06.565254528 INFO 2025-06-26 05:40:02,424 calibrate.py _nudge_pos():1806 [1] 319: 0.090 -0.0002725 0.0001387 11266 37.55 -1.076 0.685 2003-08-22T18:35:54.765761920 INFO 2025-06-26 05:40:02,848 calibrate.py _nudge_pos():1806 [1] 362: 0.080 -0.0000848 0.0000980 25 0.08 -156.791 226.430 2003-08-22T18:36:41.772541824 INFO 2025-06-26 05:40:03,047 calibrate.py _nudge_pos():1806 [1] 383: 0.090 -0.0019200 0.0011778 14926 49.75 -5.723 4.387 2003-08-22T19:26:47.966603392 INFO 2025-06-26 05:40:03,596 calibrate.py _nudge_pos():1806 [1] 440: 0.030 -0.0035428 0.0021190 11276 37.58 -13.983 10.448 2003-08-22T20:05:19.168275200 INFO 2025-06-26 05:40:04,106 calibrate.py _nudge_pos():1806 [1] 493: 0.180 -0.0048702 0.0023588 11500 38.33 -18.854 11.403 2003-08-22T20:44:31.167152256 INFO 2025-06-26 05:40:04,317 calibrate.py _nudge_pos():1862 [1] 494: - - - 2 0.00 - - INFO 2025-06-26 05:40:04,317 calibrate.py _nudge_pos():1868 [1] Points in final series = 75693 WARNING 2025-06-26 05:40:04,379 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:40:04,926 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:40:05,481 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:40:05,930 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:40:05,932 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.234.02/ctd1.nc INFO 2025-06-26 05:40:05,933 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:40:05,933 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:40:05,933 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:40:06,465 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:40:06,911 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:40:06,913 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.234.02/ctd2.nc INFO 2025-06-26 05:40:06,914 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd2_salinity values to NaN INFO 2025-06-26 05:40:06,915 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:40:06,915 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 05:40:06,928 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.234.02 ERROR 2025-06-26 05:40:06,928 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.234.02 ERROR 2025-06-26 05:40:06,928 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.234.02 ERROR 2025-06-26 05:40:06,929 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.234.02 INFO 2025-06-26 05:40:06,929 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.234.02/dorado_2003.234.02_cal.nc INFO 2025-06-26 05:40:06,999 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:40:07,002 process.py align():251 [1] Alignment steps for 2003.234.02 INFO 2025-06-26 05:40:07,026 align.py process_cal():139 [1] Processing dorado_2003.234.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.234.02 INFO 2025-06-26 05:40:07,049 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:40:07,052 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:40:07,112 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:40:07,116 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:40:07,172 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:40:07,176 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:40:07,208 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:40:07,208 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:40:07,231 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:40:07,235 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:40:07,288 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.234.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:40:07,292 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:07,342 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.234.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:40:07,345 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:07,394 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.234.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:40:07,397 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:07,445 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.234.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:07,448 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:07,497 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.234.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:07,501 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:07,549 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.234.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:07,553 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:07,602 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.234.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:07,606 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:07,654 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.234.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:07,658 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:07,706 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.234.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:07,710 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:07,759 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.234.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:07,762 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:07,811 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.234.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:07,814 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:07,862 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.234.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:07,866 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:07,914 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.234.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:07,917 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:07,967 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.234.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:07,971 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:08,020 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.234.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:08,024 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:08,073 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.234.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:08,077 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:08,126 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.234.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:08,130 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:08,179 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.234.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:08,183 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:08,235 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.234.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:08,239 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:08,288 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.234.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:40:08,291 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:40:08,348 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:40:08,384 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:40:08,420 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:40:08,434 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.234.02/dorado_2003.234.02_align.nc INFO 2025-06-26 05:40:08,491 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:40:08,493 process.py resample():273 [1] Resampling steps for 2003.234.02 INFO 2025-06-26 05:40:08,493 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:40:08,513 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.234.02/dorado_2003.234.02_align.nc mission netCDF file INFO 2025-06-26 05:40:08,518 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.234.02/dorado_2003.234.02_align.nc mission netCDF file INFO 2025-06-26 05:40:08,519 resample.py get_mission_start_end():1145 [1] navigation: 2003-08-22T16:32:34.172737280 to 2003-08-22T20:44:52.765672704 (0 days 00:00:00.019998592 before mission_end) INFO 2025-06-26 05:40:08,520 resample.py get_mission_start_end():1145 [1] hs2 : 2003-08-22T16:32:16.093975808 to 2003-08-22T20:44:52.785671296 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:40:08,522 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-08-22T16:32:31.902892800 to 2003-08-22T20:44:52.785671296 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:40:08,524 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-08-22T16:32:32.122877696 to 2003-08-22T20:44:52.735674752 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-26 05:40:08,525 resample.py get_mission_start_end():1145 [1] isus : 2003-08-22T16:33:28.788995840 to 2003-08-22T20:44:52.005724672 (0 days 00:00:00.779946624 before mission_end) INFO 2025-06-26 05:40:08,526 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.234.02/dorado_2003.234.02_align.nc mission netCDF file INFO 2025-06-26 05:40:08,526 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:08,700 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:08,733 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:08,765 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:08,795 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:08,822 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:08,849 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:08,875 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:08,901 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:08,926 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:08,950 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:08,974 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:08,998 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:09,023 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:09,046 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:09,071 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:09,096 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:09,123 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:09,149 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:09,174 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:09,199 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:09,224 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:09,249 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:09,262 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:09,274 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:09,286 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:40:09,458 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.234.02/dorado_2003.234.02_1S.nc INFO 2025-06-26 05:40:10,575 create_products.py gulper_odv():401 [1] No gulper times found for 2003.234.02 INFO 2025-06-26 05:40:10,576 process.py archive():337 [1] Archiving steps for 2003.234.02 INFO 2025-06-26 05:40:10,576 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.234.02/dorado_2003.234.02, BASE_PATH = /data/auv_data INFO 2025-06-26 05:40:10,576 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.234.02/dorado_2003.234.02 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:40:10,577 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.234.02_1S.nc INFO 2025-06-26 05:40:10,595 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.234.02/dorado_2003.234.02_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:40:10,596 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.234.02_cal.nc INFO 2025-06-26 05:40:10,660 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.234.02/dorado_2003.234.02_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:40:10,661 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.234.02_align.nc INFO 2025-06-26 05:40:10,723 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.234.02/dorado_2003.234.02_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:40:10,746 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.234.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003234/2003.234.02 done. INFO 2025-06-26 05:40:10,766 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.234.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003234/2003.234.02 done. INFO 2025-06-26 05:40:10,770 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.234.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003234/2003.234.02 done. INFO 2025-06-26 05:40:10,785 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.234.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003234/2003.234.02 done. INFO 2025-06-26 05:40:10,834 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.234.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003234/2003.234.02 done. INFO 2025-06-26 05:40:10,840 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.234.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003234/2003.234.02 done. INFO 2025-06-26 05:40:10,854 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.234.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003234/2003.234.02 done. INFO 2025-06-26 05:40:10,854 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:40:10,855 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.234.02/dorado_2003.234.02_processing.log /Volumes/AUVCTD/surveys/2003/netcdf