INFO 2025-06-26 05:38:42,272 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:38:42,272 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Re-portaled 7/7/05: maybe these 4 missions are one survey ? - ctdToUse = ctd1 INFO 2025-06-26 05:38:42,272 process.py process_mission():449 [1] Processing AUVCTD mission 2003.230.04 by user docker_user on host 671049448ece INFO 2025-06-26 05:38:42,272 process.py download_process():165 [1] Download and processing steps for 2003.230.04 INFO 2025-06-26 05:38:42,272 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003230/2003.230.04 INFO 2025-06-26 05:38:42,272 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003230/2003.230.04 to /data/auv_data/dorado/missionlogs/2003.230.04 INFO 2025-06-26 05:38:43,583 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.230.04 INFO 2025-06-26 05:38:43,584 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.04/ctdDriver.log (2614963 bytes) INFO 2025-06-26 05:38:43,778 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.04/ctdDriver2.log (2614957 bytes) INFO 2025-06-26 05:38:43,967 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.04/gps.log (26246 bytes) INFO 2025-06-26 05:38:43,977 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.04/hydroscatlog.log (1786454 bytes) INFO 2025-06-26 05:38:44,190 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.04/navigation.log (7279210 bytes) INFO 2025-06-26 05:38:44,704 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.04/isuslog.log (142965 bytes) INFO 2025-06-26 05:38:44,724 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.04/parosci.log (1787510 bytes) INFO 2025-06-26 05:38:44,878 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.04/tailCone.log (1787275 bytes) WARNING 2025-06-26 05:38:44,878 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.230.04/tailCone.log INFO 2025-06-26 05:38:44,879 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.04/biolume.log (2028416 bytes) INFO 2025-06-26 05:38:45,094 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 05:38:45,204 logs2netcdfs.py download_process_logs():807 [1] Time to process: 1.62 seconds WARNING 2025-06-26 05:38:45,204 process.py download_process():196 [1] No lopc.bin file for 2003.230.04 INFO 2025-06-26 05:38:45,204 process.py calibrate():227 [1] Calibration steps for 2003.230.04 INFO 2025-06-26 05:38:45,295 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.230.04 INFO 2025-06-26 05:38:45,307 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:38:45,308 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:38:46,612 calibrate.py _nudge_pos():1806 [1] 156: 0.100 0.0029143 -0.0026539 11546 38.48 11.244 -12.779 2003-08-18T20:21:00.412416000 INFO 2025-06-26 05:38:47,128 calibrate.py _nudge_pos():1806 [1] 210: 0.100 0.0000694 -0.0000588 40 0.13 79.229 -83.787 2003-08-18T20:22:01.418236672 INFO 2025-06-26 05:38:47,201 calibrate.py _nudge_pos():1806 [1] 216: 0.070 0.0018303 -0.0033484 11401 38.00 7.151 -16.328 2003-08-18T21:00:06.611690240 INFO 2025-06-26 05:38:47,724 calibrate.py _nudge_pos():1806 [1] 271: 0.200 0.0012888 -0.0025561 11370 37.90 5.048 -12.498 2003-08-18T21:38:54.612211328 INFO 2025-06-26 05:38:47,744 calibrate.py _nudge_pos():1806 [1] 273: 0.010 0.0013089 -0.0025505 85 0.28 693.961 -1687.994 2003-08-18T21:39:12.810964608 INFO 2025-06-26 05:38:48,350 calibrate.py _nudge_pos():1806 [1] 338: 0.020 0.0001512 -0.0000048 395 1.31 17.092 -0.679 2003-08-18T21:41:36.811099904 INFO 2025-06-26 05:38:48,676 calibrate.py _nudge_pos():1806 [1] 373: 0.020 0.0000212 -0.0000038 310 1.03 3.056 -0.685 2003-08-18T21:43:12.814523264 INFO 2025-06-26 05:38:49,158 calibrate.py _nudge_pos():1862 [1] 404: - - - 2 0.00 - - INFO 2025-06-26 05:38:49,158 calibrate.py _nudge_pos():1868 [1] Points in final series = 37099 WARNING 2025-06-26 05:38:49,191 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:38:49,473 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:38:49,760 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:38:49,983 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:38:49,984 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.230.04/ctd1.nc INFO 2025-06-26 05:38:49,985 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:38:49,986 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:38:49,986 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:38:50,257 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:38:50,482 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:38:50,484 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.230.04/ctd2.nc INFO 2025-06-26 05:38:50,485 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:38:50,485 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:38:50,485 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 05:38:50,500 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 05:38:50,817 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 900 1020 49560 57360 119700 189960 191700 243960 250860 257460 291900 336540 337260 337980 338460 338940 339420 339660 340020 340140 344460] INFO 2025-06-26 05:38:50,882 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 05:38:50,887 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 05:38:50,887 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.230.04 ERROR 2025-06-26 05:38:50,888 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.230.04 ERROR 2025-06-26 05:38:50,888 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.230.04 INFO 2025-06-26 05:38:50,888 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.230.04/dorado_2003.230.04_cal.nc INFO 2025-06-26 05:38:50,943 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:38:50,947 process.py align():251 [1] Alignment steps for 2003.230.04 INFO 2025-06-26 05:38:50,970 align.py process_cal():139 [1] Processing dorado_2003.230.04_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.230.04 INFO 2025-06-26 05:38:50,984 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:38:50,986 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:38:51,019 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:38:51,022 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:38:51,053 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:38:51,056 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:38:51,075 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:38:51,075 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:38:51,091 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:38:51,093 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:38:51,124 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.230.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:38:51,127 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:51,157 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.230.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:38:51,160 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:51,188 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.230.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:38:51,191 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:51,220 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:51,222 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:51,251 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:51,253 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:51,282 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:51,285 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:51,313 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:51,316 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:51,345 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:51,348 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:51,376 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:51,379 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:51,408 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:51,410 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:51,439 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:51,442 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:51,471 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:51,474 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:51,502 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:51,504 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:51,533 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.230.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:51,535 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:51,564 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.230.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:51,567 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:51,596 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.230.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:51,599 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:51,628 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.230.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:51,631 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:51,661 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.230.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:51,664 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:51,694 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.230.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:51,697 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:51,726 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.230.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:51,729 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:51,763 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:38:51,798 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:38:51,834 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:38:51,867 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 05:38:51,879 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.230.04/dorado_2003.230.04_align.nc INFO 2025-06-26 05:38:51,929 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:38:51,931 process.py resample():273 [1] Resampling steps for 2003.230.04 INFO 2025-06-26 05:38:51,932 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:38:51,953 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.230.04/dorado_2003.230.04_align.nc mission netCDF file INFO 2025-06-26 05:38:51,958 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.230.04/dorado_2003.230.04_align.nc mission netCDF file INFO 2025-06-26 05:38:51,959 resample.py get_mission_start_end():1145 [1] navigation: 2003-08-18T19:40:17.819744896 to 2003-08-18T21:44:04.211002368 (0 days 00:00:00.039997184 before mission_end) INFO 2025-06-26 05:38:51,960 resample.py get_mission_start_end():1145 [1] hs2 : 2003-08-18T19:40:00.920902656 to 2003-08-18T21:44:04.250999552 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:38:51,962 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-08-18T19:40:17.019799808 to 2003-08-18T21:44:04.091010560 (0 days 00:00:00.159988992 before mission_end) INFO 2025-06-26 05:38:51,963 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-08-18T19:40:17.159790208 to 2003-08-18T21:44:04.191003648 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 05:38:51,964 resample.py get_mission_start_end():1145 [1] isus : 2003-08-18T19:41:14.735845888 to 2003-08-18T21:44:04.250999552 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:38:51,966 resample.py get_mission_start_end():1145 [1] biolume : 2003-08-18T19:39:56.301184896 to 2003-08-18T21:44:03.121042688 (0 days 00:00:01.129956864 before mission_end) INFO 2025-06-26 05:38:51,966 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.230.04/dorado_2003.230.04_align.nc mission netCDF file INFO 2025-06-26 05:38:51,967 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,070 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,090 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,109 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,129 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,146 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,163 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,180 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,196 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,212 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,227 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,242 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,257 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,272 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,287 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,302 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,317 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,334 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,350 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,366 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,383 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,399 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,416 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,428 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,438 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,448 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,460 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:52,591 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.230.04/dorado_2003.230.04_1S.nc INFO 2025-06-26 05:38:53,396 create_products.py gulper_odv():401 [1] No gulper times found for 2003.230.04 INFO 2025-06-26 05:38:53,396 process.py archive():337 [1] Archiving steps for 2003.230.04 INFO 2025-06-26 05:38:53,396 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.230.04/dorado_2003.230.04, BASE_PATH = /data/auv_data INFO 2025-06-26 05:38:53,397 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.230.04/dorado_2003.230.04 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:38:53,399 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.230.04_1S.nc INFO 2025-06-26 05:38:53,411 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.04/dorado_2003.230.04_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:38:53,412 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.230.04_cal.nc INFO 2025-06-26 05:38:53,446 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.04/dorado_2003.230.04_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:38:53,447 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.230.04_align.nc INFO 2025-06-26 05:38:53,480 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.04/dorado_2003.230.04_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:38:53,494 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.04/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.04 done. INFO 2025-06-26 05:38:53,507 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.04/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.04 done. INFO 2025-06-26 05:38:53,511 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.04/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.04 done. INFO 2025-06-26 05:38:53,522 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.04/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.04 done. INFO 2025-06-26 05:38:53,548 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.04/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.04 done. INFO 2025-06-26 05:38:53,553 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.04/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.04 done. INFO 2025-06-26 05:38:53,564 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.04/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.04 done. INFO 2025-06-26 05:38:53,589 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.04/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.04 done. INFO 2025-06-26 05:38:53,589 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:38:53,589 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.04/dorado_2003.230.04_processing.log /Volumes/AUVCTD/surveys/2003/netcdf