INFO 2025-06-26 05:38:37,345 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber
INFO 2025-06-26 05:38:37,345 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Re-portaled 7/7/05: maybe these 4 missions are one survey ? - ctdToUse = ctd1 
INFO 2025-06-26 05:38:37,345 process.py process_mission():449 [1] Processing AUVCTD mission 2003.230.03 by user docker_user on host 671049448ece
INFO 2025-06-26 05:38:37,345 process.py download_process():165 [1] Download and processing steps for 2003.230.03
INFO 2025-06-26 05:38:37,345 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003230/2003.230.03
INFO 2025-06-26 05:38:37,345 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003230/2003.230.03 to /data/auv_data/dorado/missionlogs/2003.230.03
INFO 2025-06-26 05:38:38,156 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.230.03
INFO 2025-06-26 05:38:38,157 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.03/ctdDriver.log (467499 bytes)
INFO 2025-06-26 05:38:38,199 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.03/ctdDriver2.log (467493 bytes)
INFO 2025-06-26 05:38:38,240 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.03/gps.log (12506 bytes)
INFO 2025-06-26 05:38:38,247 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.03/hydroscatlog.log (322874 bytes)
INFO 2025-06-26 05:38:38,292 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.03/navigation.log (1299250 bytes)
INFO 2025-06-26 05:38:38,390 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.03/isuslog.log (24853 bytes)
INFO 2025-06-26 05:38:38,397 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.03/parosci.log (323270 bytes)
INFO 2025-06-26 05:38:38,427 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.03/tailCone.log (323275 bytes)
WARNING 2025-06-26 05:38:38,428 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.230.03/tailCone.log
INFO 2025-06-26 05:38:38,428 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.03/biolume.log (368944 bytes)
INFO 2025-06-26 05:38:38,467 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data
INFO 2025-06-26 05:38:38,489 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.33 seconds
WARNING 2025-06-26 05:38:38,489 process.py download_process():196 [1] No lopc.bin file for 2003.230.03
INFO 2025-06-26 05:38:38,489 process.py calibrate():227 [1] Calibration steps for 2003.230.03
INFO 2025-06-26 05:38:38,541 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.230.03
INFO 2025-06-26 05:38:38,548 calibrate.py _nudge_pos():1680 [1] seg#   end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2025-06-26 05:38:38,549 calibrate.py _nudge_pos():1711 [1]                   -            -            -         0      0.00              -              -                             -
INFO 2025-06-26 05:38:39,991 calibrate.py _nudge_pos():1806 [1]   176:        0.170    0.0016183   -0.0017441      5760     19.20         12.519        -16.835 2003-08-18T19:31:49.164590208
INFO 2025-06-26 05:38:40,173 calibrate.py _nudge_pos():1862 [1]  174:            -            -            -         3      0.01              -              -
INFO 2025-06-26 05:38:40,173 calibrate.py _nudge_pos():1868 [1] Points in final series = 6623
WARNING 2025-06-26 05:38:40,182 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz
INFO 2025-06-26 05:38:40,245 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds
INFO 2025-06-26 05:38:40,312 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds
INFO 2025-06-26 05:38:40,354 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds
INFO 2025-06-26 05:38:40,355 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.230.03/ctd1.nc
INFO 2025-06-26 05:38:40,356 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN
INFO 2025-06-26 05:38:40,357 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))]
INFO 2025-06-26 05:38:40,357 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1
INFO 2025-06-26 05:38:40,416 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds
INFO 2025-06-26 05:38:40,459 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds
INFO 2025-06-26 05:38:40,460 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.230.03/ctd2.nc
INFO 2025-06-26 05:38:40,461 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN
INFO 2025-06-26 05:38:40,462 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))]
INFO 2025-06-26 05:38:40,462 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2
INFO 2025-06-26 05:38:40,470 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz
INFO 2025-06-26 05:38:40,527 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [  900 52380]
INFO 2025-06-26 05:38:40,540 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds
ERROR 2025-06-26 05:38:40,545 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']"
ERROR 2025-06-26 05:38:40,545 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.230.03
ERROR 2025-06-26 05:38:40,545 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.230.03
ERROR 2025-06-26 05:38:40,545 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.230.03
INFO 2025-06-26 05:38:40,546 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.230.03/dorado_2003.230.03_cal.nc
INFO 2025-06-26 05:38:40,586 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time
INFO 2025-06-26 05:38:40,590 process.py align():251 [1] Alignment steps for 2003.230.03
INFO 2025-06-26 05:38:40,609 align.py process_cal():139 [1] Processing dorado_2003.230.03_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.230.03
INFO 2025-06-26 05:38:40,615 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-06-26 05:38:40,617 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 05:38:40,630 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-06-26 05:38:40,631 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 05:38:40,643 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-06-26 05:38:40,645 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 05:38:40,652 align.py process_cal():161 [1] Skipping navigation_posx
INFO 2025-06-26 05:38:40,652 align.py process_cal():161 [1] Skipping navigation_posy
INFO 2025-06-26 05:38:40,657 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-06-26 05:38:40,659 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00
INFO 2025-06-26 05:38:40,670 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.230.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794)
INFO 2025-06-26 05:38:40,672 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:38:40,684 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.230.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794)
INFO 2025-06-26 05:38:40,685 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:38:40,696 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.230.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794)
INFO 2025-06-26 05:38:40,698 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:38:40,710 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:38:40,711 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:38:40,723 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:38:40,725 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:38:40,737 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:38:40,738 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:38:40,750 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:38:40,751 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:38:40,763 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:38:40,764 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:38:40,776 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:38:40,778 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:38:40,789 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:38:40,791 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:38:40,804 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:38:40,806 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:38:40,818 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:38:40,820 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:38:40,832 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:38:40,834 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:38:40,846 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.230.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:38:40,847 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:38:40,860 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.230.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:38:40,862 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:38:40,874 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.230.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:38:40,876 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:38:40,888 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.230.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:38:40,890 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:38:40,902 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.230.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:38:40,904 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:38:40,917 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.230.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:38:40,918 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:38:40,931 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.230.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001)
INFO 2025-06-26 05:38:40,932 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00
INFO 2025-06-26 05:38:40,947 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.61
INFO 2025-06-26 05:38:40,962 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.61
INFO 2025-06-26 05:38:40,976 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.61
INFO 2025-06-26 05:38:40,990 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00
INFO 2025-06-26 05:38:41,000 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.230.03/dorado_2003.230.03_align.nc
INFO 2025-06-26 05:38:41,041 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw
INFO 2025-06-26 05:38:41,043 process.py resample():273 [1] Resampling steps for 2003.230.03
INFO 2025-06-26 05:38:41,043 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m
INFO 2025-06-26 05:38:41,062 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.230.03/dorado_2003.230.03_align.nc mission netCDF file
INFO 2025-06-26 05:38:41,066 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.230.03/dorado_2003.230.03_align.nc mission netCDF file
INFO 2025-06-26 05:38:41,067 resample.py get_mission_start_end():1145 [1] navigation: 2003-08-18T19:10:04.373974528 to 2003-08-18T19:32:08.773246976 (0 days 00:00:00.029997952 before mission_end)
INFO 2025-06-26 05:38:41,069 resample.py get_mission_start_end():1145 [1] hs2       : 2003-08-18T19:09:46.855174656 to 2003-08-18T19:32:08.703251712 (0 days 00:00:00.099993216 before mission_end)
INFO 2025-06-26 05:38:41,070 resample.py get_mission_start_end():1145 [1] ctd1      : 2003-08-18T19:10:02.594096384 to 2003-08-18T19:32:08.643255808 (0 days 00:00:00.159989120 before mission_end)
INFO 2025-06-26 05:38:41,071 resample.py get_mission_start_end():1145 [1] ctd2      : 2003-08-18T19:10:02.744086144 to 2003-08-18T19:32:08.803244928 (0 days 00:00:00 before mission_end)
INFO 2025-06-26 05:38:41,072 resample.py get_mission_start_end():1145 [1] isus      : 2003-08-18T19:10:58.480268032 to 2003-08-18T19:32:07.753316864 (0 days 00:00:01.049928064 before mission_end)
INFO 2025-06-26 05:38:41,074 resample.py get_mission_start_end():1145 [1] biolume   : 2003-08-18T19:09:42.185460352 to 2003-08-18T19:32:08.153255168 (0 days 00:00:00.649989760 before mission_end)
INFO 2025-06-26 05:38:41,074 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.230.03/dorado_2003.230.03_align.nc mission netCDF file
INFO 2025-06-26 05:38:41,075 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter 
INFO 2025-06-26 05:38:41,115 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,124 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,134 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,144 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,154 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,163 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,173 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,182 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,190 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,197 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,205 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,213 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,221 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,229 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,237 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,245 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,254 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,263 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,272 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,281 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,289 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,300 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,308 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,316 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,324 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,333 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter
INFO 2025-06-26 05:38:41,428 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.230.03/dorado_2003.230.03_1S.nc
INFO 2025-06-26 05:38:42,173 create_products.py gulper_odv():401 [1] No gulper times found for 2003.230.03
INFO 2025-06-26 05:38:42,173 process.py archive():337 [1] Archiving steps for 2003.230.03
INFO 2025-06-26 05:38:42,174 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.230.03/dorado_2003.230.03, BASE_PATH = /data/auv_data
INFO 2025-06-26 05:38:42,174 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.230.03/dorado_2003.230.03 files to /Volumes/AUVCTD/surveys/2003/netcdf
INFO 2025-06-26 05:38:42,175 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.230.03_1S.nc
INFO 2025-06-26 05:38:42,182 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.03/dorado_2003.230.03_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done.
INFO 2025-06-26 05:38:42,183 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.230.03_cal.nc
INFO 2025-06-26 05:38:42,195 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.03/dorado_2003.230.03_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done.
INFO 2025-06-26 05:38:42,195 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.230.03_align.nc
INFO 2025-06-26 05:38:42,207 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.03/dorado_2003.230.03_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done.
INFO 2025-06-26 05:38:42,217 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.03/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.03 done.
INFO 2025-06-26 05:38:42,223 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.03/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.03 done.
INFO 2025-06-26 05:38:42,227 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.03 done.
INFO 2025-06-26 05:38:42,234 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.03/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.03 done.
INFO 2025-06-26 05:38:42,243 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.03 done.
INFO 2025-06-26 05:38:42,248 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.03/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.03 done.
INFO 2025-06-26 05:38:42,253 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.03 done.
INFO 2025-06-26 05:38:42,263 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.03/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.03 done.
INFO 2025-06-26 05:38:42,263 archive.py copy_to_AUVTCD():116 [1] Archiving product files
INFO 2025-06-26 05:38:42,263 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.03/dorado_2003.230.03_processing.log /Volumes/AUVCTD/surveys/2003/netcdf