INFO 2025-06-26 05:38:22,716 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:38:22,717 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Re-portaled 7/7/05: maybe these 4 missions are one survey ? - ctdToUse = ctd1 INFO 2025-06-26 05:38:22,717 process.py process_mission():449 [1] Processing AUVCTD mission 2003.230.02 by user docker_user on host 671049448ece INFO 2025-06-26 05:38:22,717 process.py download_process():165 [1] Download and processing steps for 2003.230.02 INFO 2025-06-26 05:38:22,717 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003230/2003.230.02 INFO 2025-06-26 05:38:22,717 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003230/2003.230.02 to /data/auv_data/dorado/missionlogs/2003.230.02 INFO 2025-06-26 05:38:26,797 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.230.02 INFO 2025-06-26 05:38:26,797 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.02/ctdDriver.log (2662659 bytes) INFO 2025-06-26 05:38:26,992 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.02/ctdDriver2.log (2662565 bytes) INFO 2025-06-26 05:38:27,191 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.02/gps.log (28046 bytes) INFO 2025-06-26 05:38:27,201 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.02/hydroscatlog.log (1818974 bytes) INFO 2025-06-26 05:38:27,416 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.02/navigation.log (7411118 bytes) INFO 2025-06-26 05:38:27,967 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.02/isuslog.log (145653 bytes) INFO 2025-06-26 05:38:27,985 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.02/parosci.log (1820054 bytes) INFO 2025-06-26 05:38:28,142 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.02/tailCone.log (1819579 bytes) WARNING 2025-06-26 05:38:28,143 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.230.02/tailCone.log INFO 2025-06-26 05:38:28,143 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.230.02/biolume.log (2065408 bytes) INFO 2025-06-26 05:38:28,337 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 05:38:28,448 logs2netcdfs.py download_process_logs():807 [1] Time to process: 1.65 seconds WARNING 2025-06-26 05:38:28,448 process.py download_process():196 [1] No lopc.bin file for 2003.230.02 INFO 2025-06-26 05:38:28,448 process.py calibrate():227 [1] Calibration steps for 2003.230.02 INFO 2025-06-26 05:38:28,539 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.230.02 INFO 2025-06-26 05:38:28,551 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:38:28,553 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:38:30,018 calibrate.py _nudge_pos():1806 [1] 170: 0.020 0.0030792 -0.0063409 11471 38.23 11.962 -30.732 2003-08-18T17:35:35.872293504 INFO 2025-06-26 05:38:30,501 calibrate.py _nudge_pos():1806 [1] 222: 0.010 0.0000165 -0.0000486 55 0.18 13.582 -50.050 2003-08-18T17:36:37.878045824 INFO 2025-06-26 05:38:30,567 calibrate.py _nudge_pos():1806 [1] 229: 0.160 0.0030656 -0.0056167 11330 37.76 12.057 -27.561 2003-08-18T18:14:29.872403456 INFO 2025-06-26 05:38:30,756 calibrate.py _nudge_pos():1806 [1] 249: 0.160 0.0000176 0.0000284 40 0.13 20.067 40.483 2003-08-18T18:14:56.870554112 INFO 2025-06-26 05:38:31,020 calibrate.py _nudge_pos():1806 [1] 277: 0.120 0.0031680 -0.0049879 11551 38.50 12.220 -24.007 2003-08-18T18:53:54.070444928 INFO 2025-06-26 05:38:31,521 calibrate.py _nudge_pos():1806 [1] 331: 0.120 0.0001630 -0.0002508 340 1.13 21.423 -41.123 2003-08-18T18:55:55.072155776 INFO 2025-06-26 05:38:31,531 calibrate.py _nudge_pos():1806 [1] 332: 0.120 -0.0000105 0.0000420 15 0.05 -33.552 166.888 2003-08-18T18:55:58.071950208 INFO 2025-06-26 05:38:31,956 calibrate.py _nudge_pos():1806 [1] 377: 0.130 0.0002172 -0.0003544 480 1.60 20.200 -41.131 2003-08-18T18:58:18.072359552 INFO 2025-06-26 05:38:32,005 calibrate.py _nudge_pos():1806 [1] 382: 0.130 0.0000057 -0.0000442 25 0.08 10.582 -102.367 2003-08-18T18:58:27.071742976 INFO 2025-06-26 05:38:32,149 calibrate.py _nudge_pos():1806 [1] 397: 0.130 0.0000022 -0.0000129 15 0.05 6.907 -51.045 2003-08-18T18:58:44.070578560 INFO 2025-06-26 05:38:32,337 calibrate.py _nudge_pos():1806 [1] 417: 0.120 -0.0000485 0.0000472 25 0.08 -89.969 109.265 2003-08-18T18:59:09.078865280 INFO 2025-06-26 05:38:32,411 calibrate.py _nudge_pos():1806 [1] 425: 0.130 -0.0001254 0.0003675 30 0.10 -192.680 704.439 2003-08-18T18:59:23.077906432 INFO 2025-06-26 05:38:32,513 calibrate.py _nudge_pos():1806 [1] 436: 0.130 0.0001272 -0.0002030 290 0.96 19.615 -39.046 2003-08-18T19:00:32.073179904 INFO 2025-06-26 05:38:32,587 calibrate.py _nudge_pos():1806 [1] 444: 0.130 0.0000251 -0.0000472 30 0.10 38.601 -90.511 2003-08-18T19:00:45.072289408 INFO 2025-06-26 05:38:32,685 calibrate.py _nudge_pos():1862 [1] 433: - - - 3 0.01 - - INFO 2025-06-26 05:38:32,685 calibrate.py _nudge_pos():1868 [1] Points in final series = 37805 WARNING 2025-06-26 05:38:32,718 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:38:33,003 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:38:33,290 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:38:33,511 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:38:33,513 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.230.02/ctd1.nc INFO 2025-06-26 05:38:33,514 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 05:38:33,514 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:38:33,514 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:38:33,785 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:38:34,006 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:38:34,008 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.230.02/ctd2.nc INFO 2025-06-26 05:38:34,009 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:38:34,010 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:38:34,010 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 05:38:34,029 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 05:38:34,441 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 900 1140 49320 57720 63960 107400 108600 122640 135000 156900 198780 211200 213660 233700 243780 270660 341940 387480 388680 392760 397860 417780] INFO 2025-06-26 05:38:34,510 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 05:38:34,515 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 05:38:34,515 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.230.02 ERROR 2025-06-26 05:38:34,515 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.230.02 ERROR 2025-06-26 05:38:34,515 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.230.02 INFO 2025-06-26 05:38:34,516 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.230.02/dorado_2003.230.02_cal.nc INFO 2025-06-26 05:38:34,573 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:38:34,576 process.py align():251 [1] Alignment steps for 2003.230.02 INFO 2025-06-26 05:38:34,600 align.py process_cal():139 [1] Processing dorado_2003.230.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.230.02 INFO 2025-06-26 05:38:34,615 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:38:34,617 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:38:34,652 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:38:34,655 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:38:34,692 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:38:34,695 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:38:34,716 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:38:34,716 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:38:34,731 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:38:34,734 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:38:34,776 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.230.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:38:34,780 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:34,810 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.230.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:38:34,813 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:34,850 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.230.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:38:34,853 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:34,883 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:34,885 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:34,915 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:34,918 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:34,948 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:34,951 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:34,980 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:34,983 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:35,013 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:35,017 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:35,047 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:35,050 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:35,080 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:35,083 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:35,112 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:35,115 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:35,144 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:35,147 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:35,176 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.230.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:35,179 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:35,208 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.230.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:35,211 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:35,241 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.230.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:35,244 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:35,273 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.230.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:35,277 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:35,307 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.230.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:35,310 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:35,341 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.230.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:35,344 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:35,375 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.230.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:35,378 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:35,408 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.230.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:35,410 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:35,445 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:38:35,470 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:38:35,495 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.61 INFO 2025-06-26 05:38:35,524 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 05:38:35,538 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.230.02/dorado_2003.230.02_align.nc INFO 2025-06-26 05:38:35,594 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:38:35,596 process.py resample():273 [1] Resampling steps for 2003.230.02 INFO 2025-06-26 05:38:35,596 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:38:35,618 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.230.02/dorado_2003.230.02_align.nc mission netCDF file INFO 2025-06-26 05:38:35,622 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.230.02/dorado_2003.230.02_align.nc mission netCDF file INFO 2025-06-26 05:38:35,624 resample.py get_mission_start_end():1145 [1] navigation: 2003-08-18T16:54:54.679526656 to 2003-08-18T19:00:55.671563264 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:38:35,625 resample.py get_mission_start_end():1145 [1] hs2 : 2003-08-18T16:54:36.800751488 to 2003-08-18T19:00:55.641565312 (0 days 00:00:00.029997952 before mission_end) INFO 2025-06-26 05:38:35,626 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-08-18T16:54:52.789656192 to 2003-08-18T19:00:55.591568768 (0 days 00:00:00.079994496 before mission_end) INFO 2025-06-26 05:38:35,628 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-08-18T16:54:53.039639040 to 2003-08-18T19:00:55.581569408 (0 days 00:00:00.089993856 before mission_end) INFO 2025-06-26 05:38:35,629 resample.py get_mission_start_end():1145 [1] isus : 2003-08-18T16:55:49.295785216 to 2003-08-18T19:00:54.981610496 (0 days 00:00:00.689952768 before mission_end) INFO 2025-06-26 05:38:35,630 resample.py get_mission_start_end():1145 [1] biolume : 2003-08-18T16:54:32.021044608 to 2003-08-18T19:00:54.851585152 (0 days 00:00:00.819978112 before mission_end) INFO 2025-06-26 05:38:35,631 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.230.02/dorado_2003.230.02_align.nc mission netCDF file INFO 2025-06-26 05:38:35,631 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:35,735 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:35,757 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:35,777 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:35,797 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:35,815 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:35,834 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:35,852 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:35,869 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:35,885 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:35,901 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:35,916 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:35,932 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:35,948 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:35,964 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:35,980 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:35,997 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:36,016 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:36,034 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:36,051 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:36,068 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:36,085 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:36,103 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:36,113 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:36,124 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:36,134 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:36,146 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:36,281 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.230.02/dorado_2003.230.02_1S.nc INFO 2025-06-26 05:38:37,131 create_products.py gulper_odv():401 [1] No gulper times found for 2003.230.02 INFO 2025-06-26 05:38:37,131 process.py archive():337 [1] Archiving steps for 2003.230.02 INFO 2025-06-26 05:38:37,131 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.230.02/dorado_2003.230.02, BASE_PATH = /data/auv_data INFO 2025-06-26 05:38:37,131 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.230.02/dorado_2003.230.02 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:38:37,133 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.230.02_1S.nc INFO 2025-06-26 05:38:37,145 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.02/dorado_2003.230.02_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:38:37,146 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.230.02_cal.nc INFO 2025-06-26 05:38:37,181 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.02/dorado_2003.230.02_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:38:37,182 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.230.02_align.nc INFO 2025-06-26 05:38:37,214 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.02/dorado_2003.230.02_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:38:37,228 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.02 done. INFO 2025-06-26 05:38:37,240 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.02 done. INFO 2025-06-26 05:38:37,244 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.02 done. INFO 2025-06-26 05:38:37,255 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.02 done. INFO 2025-06-26 05:38:37,279 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.02 done. INFO 2025-06-26 05:38:37,284 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.02 done. INFO 2025-06-26 05:38:37,295 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.02 done. INFO 2025-06-26 05:38:37,322 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003230/2003.230.02 done. INFO 2025-06-26 05:38:37,322 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:38:37,322 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.230.02/dorado_2003.230.02_processing.log /Volumes/AUVCTD/surveys/2003/netcdf