INFO 2025-06-26 05:38:06,167 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:38:06,167 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Re-portaled 7/7/05 - ctdToUse = ctd1 INFO 2025-06-26 05:38:06,167 process.py process_mission():449 [1] Processing AOSN mission 2003.228.05 by user docker_user on host 671049448ece INFO 2025-06-26 05:38:06,167 process.py download_process():165 [1] Download and processing steps for 2003.228.05 INFO 2025-06-26 05:38:06,167 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003228/2003.228.05 INFO 2025-06-26 05:38:06,167 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003228/2003.228.05 to /data/auv_data/dorado/missionlogs/2003.228.05 INFO 2025-06-26 05:38:08,123 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.228.05 INFO 2025-06-26 05:38:08,124 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.228.05/ctdDriver.log (4729691 bytes) INFO 2025-06-26 05:38:08,460 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.228.05/ctdDriver2.log (4729069 bytes) INFO 2025-06-26 05:38:08,812 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.228.05/gps.log (31826 bytes) INFO 2025-06-26 05:38:08,823 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.228.05/hydroscatlog.log (3227414 bytes) INFO 2025-06-26 05:38:09,201 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.228.05/navigation.log (13165874 bytes) INFO 2025-06-26 05:38:10,135 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.228.05/isuslog.log (259093 bytes) INFO 2025-06-26 05:38:10,164 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.228.05/parosci.log (3229334 bytes) INFO 2025-06-26 05:38:10,434 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.228.05/tailCone.log (3228811 bytes) WARNING 2025-06-26 05:38:10,434 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.228.05/tailCone.log INFO 2025-06-26 05:38:10,434 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.228.05/biolume.log (3662592 bytes) INFO 2025-06-26 05:38:10,784 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 05:38:10,979 logs2netcdfs.py download_process_logs():807 [1] Time to process: 2.86 seconds WARNING 2025-06-26 05:38:10,980 process.py download_process():196 [1] No lopc.bin file for 2003.228.05 INFO 2025-06-26 05:38:10,980 process.py calibrate():227 [1] Calibration steps for 2003.228.05 INFO 2025-06-26 05:38:11,108 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.228.05 INFO 2025-06-26 05:38:11,127 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:38:11,128 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:38:12,530 calibrate.py _nudge_pos():1806 [1] 169: 0.140 0.0000252 -0.0000184 35 0.11 33.031 -30.030 2003-08-16T14:18:00.829284992 INFO 2025-06-26 05:38:12,604 calibrate.py _nudge_pos():1806 [1] 177: 0.080 -0.0024799 -0.0000275 11436 38.12 -9.667 -0.133 2003-08-16T14:56:15.022121984 INFO 2025-06-26 05:38:12,745 calibrate.py _nudge_pos():1806 [1] 192: 0.090 0.0000183 -0.0000013 50 0.16 16.692 -1.462 2003-08-16T14:56:39.020477952 INFO 2025-06-26 05:38:13,243 calibrate.py _nudge_pos():1806 [1] 246: 0.060 -0.0000685 -0.0016124 12816 42.72 -0.238 -6.995 2003-08-16T15:40:15.221256064 INFO 2025-06-26 05:38:13,624 calibrate.py _nudge_pos():1806 [1] 288: 0.050 0.0000088 -0.0000037 20 0.06 20.706 -10.904 2003-08-16T15:41:00.228172928 INFO 2025-06-26 05:38:13,825 calibrate.py _nudge_pos():1806 [1] 310: 0.140 -0.0003888 -0.0019515 6720 22.40 -2.579 -16.146 2003-08-16T16:03:45.224664192 INFO 2025-06-26 05:38:14,308 calibrate.py _nudge_pos():1806 [1] 363: 0.100 -0.0023346 -0.0044516 12521 41.73 -8.308 -19.765 2003-08-16T16:46:21.429552256 INFO 2025-06-26 05:38:14,834 calibrate.py _nudge_pos():1806 [1] 418: 0.060 -0.0009186 -0.0038194 11701 39.00 -3.497 -18.147 2003-08-16T17:26:15.625538432 INFO 2025-06-26 05:38:15,448 calibrate.py _nudge_pos():1806 [1] 483: 0.180 0.0005220 -0.0053694 9435 31.45 2.465 -31.639 2003-08-16T17:58:46.621886080 INFO 2025-06-26 05:38:15,773 calibrate.py _nudge_pos():1862 [1] 496: - - - 2 0.00 - - INFO 2025-06-26 05:38:15,773 calibrate.py _nudge_pos():1868 [1] Points in final series = 67166 WARNING 2025-06-26 05:38:15,829 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 05:38:16,317 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:38:16,806 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:38:17,199 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:38:17,200 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.228.05/ctd1.nc INFO 2025-06-26 05:38:17,202 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd1_salinity values to NaN INFO 2025-06-26 05:38:17,202 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:38:17,202 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:38:17,669 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:38:18,062 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 05:38:18,064 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.228.05/ctd2.nc INFO 2025-06-26 05:38:18,065 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:38:18,066 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:38:18,066 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 05:38:18,089 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 05:38:18,750 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 660 18060 35580 36960 40140 46380 48960 50400 55080 56460 67440 71160 77220 77520 78600 81120 82500 83220 84540 84660 277560 506640] INFO 2025-06-26 05:38:18,864 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 05:38:18,869 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 05:38:18,869 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.228.05 ERROR 2025-06-26 05:38:18,870 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.228.05 ERROR 2025-06-26 05:38:18,870 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.228.05 INFO 2025-06-26 05:38:18,870 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.228.05/dorado_2003.228.05_cal.nc INFO 2025-06-26 05:38:18,937 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:38:18,941 process.py align():251 [1] Alignment steps for 2003.228.05 INFO 2025-06-26 05:38:18,966 align.py process_cal():139 [1] Processing dorado_2003.228.05_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.228.05 INFO 2025-06-26 05:38:18,988 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:38:18,991 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:38:19,043 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:38:19,047 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:38:19,097 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:38:19,100 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:38:19,130 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:38:19,130 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:38:19,151 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:38:19,155 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:38:19,205 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.228.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:38:19,208 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:19,254 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.228.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:38:19,257 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:19,302 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2003.228.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 05:38:19,305 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:19,349 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.228.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:19,352 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:19,398 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.228.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:19,401 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:19,446 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.228.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:19,449 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:19,494 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.228.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:19,498 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:19,543 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.228.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:19,546 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:19,591 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.228.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:19,595 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:19,638 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.228.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:19,642 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:19,687 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.228.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:19,691 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:19,735 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.228.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:19,739 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:19,784 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.228.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:19,786 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:19,830 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.228.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:19,834 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:19,878 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.228.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:19,881 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:19,926 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.228.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:19,931 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:19,976 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.228.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:19,980 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:20,027 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.228.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:20,031 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:20,079 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.228.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:20,082 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:20,128 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.228.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:38:20,132 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:38:20,182 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:38:20,215 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:38:20,250 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:38:20,285 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 05:38:20,301 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.228.05/dorado_2003.228.05_align.nc INFO 2025-06-26 05:38:20,364 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:38:20,366 process.py resample():273 [1] Resampling steps for 2003.228.05 INFO 2025-06-26 05:38:20,367 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:38:20,389 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.228.05/dorado_2003.228.05_align.nc mission netCDF file INFO 2025-06-26 05:38:20,393 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.228.05/dorado_2003.228.05_align.nc mission netCDF file INFO 2025-06-26 05:38:20,395 resample.py get_mission_start_end():1145 [1] navigation: 2003-08-16T14:15:27.829766272 to 2003-08-16T17:59:21.029528960 (0 days 00:00:00.009999360 before mission_end) INFO 2025-06-26 05:38:20,396 resample.py get_mission_start_end():1145 [1] hs2 : 2003-08-16T14:15:10.000987520 to 2003-08-16T17:59:21.039528320 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:38:20,398 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-08-16T14:15:25.969893632 to 2003-08-16T17:59:21.019529728 (0 days 00:00:00.019998592 before mission_end) INFO 2025-06-26 05:38:20,399 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-08-16T14:15:26.609849856 to 2003-08-16T17:59:20.879539200 (0 days 00:00:00.159989120 before mission_end) INFO 2025-06-26 05:38:20,401 resample.py get_mission_start_end():1145 [1] isus : 2003-08-16T14:16:22.456024064 to 2003-08-16T17:59:19.889607040 (0 days 00:00:01.149921280 before mission_end) INFO 2025-06-26 05:38:20,402 resample.py get_mission_start_end():1145 [1] biolume : 2003-08-16T14:15:05.511260928 to 2003-08-16T17:59:20.199551616 (0 days 00:00:00.839976704 before mission_end) INFO 2025-06-26 05:38:20,402 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.228.05/dorado_2003.228.05_align.nc mission netCDF file INFO 2025-06-26 05:38:20,403 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:20,566 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:20,595 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:20,624 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:20,653 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:20,678 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:20,703 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:20,727 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:20,751 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:20,773 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:20,795 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:20,817 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:20,838 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:20,860 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:20,882 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:20,904 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:20,926 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:20,950 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:20,975 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:20,999 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:21,024 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:21,049 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:21,073 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:21,087 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:21,099 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:21,110 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:21,123 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 05:38:21,286 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.228.05/dorado_2003.228.05_1S.nc INFO 2025-06-26 05:38:22,406 create_products.py gulper_odv():401 [1] No gulper times found for 2003.228.05 INFO 2025-06-26 05:38:22,406 process.py archive():337 [1] Archiving steps for 2003.228.05 INFO 2025-06-26 05:38:22,406 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.228.05/dorado_2003.228.05, BASE_PATH = /data/auv_data INFO 2025-06-26 05:38:22,408 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.228.05/dorado_2003.228.05 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:38:22,409 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.228.05_1S.nc INFO 2025-06-26 05:38:22,423 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.228.05/dorado_2003.228.05_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:38:22,424 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.228.05_cal.nc INFO 2025-06-26 05:38:22,478 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.228.05/dorado_2003.228.05_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:38:22,479 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.228.05_align.nc INFO 2025-06-26 05:38:22,533 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.228.05/dorado_2003.228.05_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:38:22,553 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.228.05/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003228/2003.228.05 done. INFO 2025-06-26 05:38:22,571 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.228.05/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003228/2003.228.05 done. INFO 2025-06-26 05:38:22,577 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.228.05/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003228/2003.228.05 done. INFO 2025-06-26 05:38:22,591 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.228.05/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003228/2003.228.05 done. INFO 2025-06-26 05:38:22,629 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.228.05/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003228/2003.228.05 done. INFO 2025-06-26 05:38:22,635 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.228.05/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003228/2003.228.05 done. INFO 2025-06-26 05:38:22,650 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.228.05/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003228/2003.228.05 done. INFO 2025-06-26 05:38:22,691 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.228.05/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003228/2003.228.05 done. INFO 2025-06-26 05:38:22,691 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:38:22,691 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.228.05/dorado_2003.228.05_processing.log /Volumes/AUVCTD/surveys/2003/netcdf