INFO 2025-06-26 05:34:30,977 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2003 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 05:34:30,978 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled files exist in archive, but not processed by reprocess_surveys.m - ctdToUse = ctd1 INFO 2025-06-26 05:34:30,978 process.py process_mission():449 [1] Processing AUVCTD mission 2003.220.11 by user docker_user on host 671049448ece INFO 2025-06-26 05:34:30,978 process.py download_process():165 [1] Download and processing steps for 2003.220.11 INFO 2025-06-26 05:34:30,978 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2003/2003220/2003.220.11 INFO 2025-06-26 05:34:30,979 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2003/2003220/2003.220.11 to /data/auv_data/dorado/missionlogs/2003.220.11 INFO 2025-06-26 05:34:36,672 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2003.220.11 INFO 2025-06-26 05:34:36,672 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.220.11/ctdDriver.log (5823443 bytes) INFO 2025-06-26 05:34:37,107 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.220.11/ctdDriver2.log (5823613 bytes) INFO 2025-06-26 05:34:37,572 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.220.11/gps.log (32366 bytes) INFO 2025-06-26 05:34:37,582 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.220.11/hydroscatlog.log (3972794 bytes) INFO 2025-06-26 05:34:38,039 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.220.11/navigation.log (16211518 bytes) INFO 2025-06-26 05:34:39,171 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.220.11/isuslog.log (318869 bytes) INFO 2025-06-26 05:34:39,212 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.220.11/parosci.log (3975302 bytes) INFO 2025-06-26 05:34:39,543 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.220.11/tailCone.log (3974779 bytes) WARNING 2025-06-26 05:34:39,544 logs2netcdfs.py download_process_logs():795 [1] Failed to parse long_name & units from header in file /data/auv_data/dorado/missionlogs/2003.220.11/tailCone.log INFO 2025-06-26 05:34:39,544 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2003.220.11/biolume.log (4507968 bytes) INFO 2025-06-26 05:34:39,970 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 05:34:40,211 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.54 seconds WARNING 2025-06-26 05:34:40,212 process.py download_process():196 [1] No lopc.bin file for 2003.220.11 INFO 2025-06-26 05:34:40,212 process.py calibrate():227 [1] Calibration steps for 2003.220.11 INFO 2025-06-26 05:34:40,356 calibrate.py _navigation_process():1524 [1] Converting from Easting/Northing to lat/lon for mission 2003.220.11 INFO 2025-06-26 05:34:40,375 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 05:34:40,377 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 05:34:41,788 calibrate.py _nudge_pos():1806 [1] 166: 0.190 0.0000043 -0.0000195 49 0.16 4.001 -22.603 2003-08-08T17:35:49.909571584 INFO 2025-06-26 05:34:41,862 calibrate.py _nudge_pos():1806 [1] 174: 0.140 0.0029062 -0.0037175 11426 38.08 11.334 -18.088 2003-08-08T18:14:02.102545664 INFO 2025-06-26 05:34:42,395 calibrate.py _nudge_pos():1806 [1] 232: 0.090 0.0024060 -0.0030732 11511 38.37 9.313 -14.843 2003-08-08T18:53:21.300929408 INFO 2025-06-26 05:34:42,415 calibrate.py _nudge_pos():1806 [1] 234: 0.090 0.0000450 -0.0000374 40 0.13 51.396 -53.379 2003-08-08T18:53:30.300312960 INFO 2025-06-26 05:34:42,898 calibrate.py _nudge_pos():1806 [1] 286: 0.030 0.0020794 -0.0025358 11491 38.30 8.062 -12.269 2003-08-08T19:32:39.509380992 INFO 2025-06-26 05:34:43,373 calibrate.py _nudge_pos():1806 [1] 337: 0.040 -0.0000004 -0.0000458 20 0.06 -0.830 -134.089 2003-08-08T19:33:33.505682048 INFO 2025-06-26 05:34:43,521 calibrate.py _nudge_pos():1806 [1] 353: 0.180 0.0019736 -0.0016001 11410 38.03 7.705 -7.797 2003-08-08T20:11:51.508258048 INFO 2025-06-26 05:34:44,015 calibrate.py _nudge_pos():1806 [1] 406: 0.200 -0.0000459 0.0000650 45 0.15 -46.510 82.081 2003-08-08T20:12:52.504079616 INFO 2025-06-26 05:34:44,071 calibrate.py _nudge_pos():1806 [1] 412: 0.140 0.0022845 -0.0011359 11550 38.50 8.810 -5.467 2003-08-08T20:51:27.705477504 INFO 2025-06-26 05:34:44,615 calibrate.py _nudge_pos():1806 [1] 470: 0.090 0.0032355 -0.0020018 11621 38.73 12.400 -9.577 2003-08-08T21:31:09.902285824 INFO 2025-06-26 05:34:45,030 calibrate.py _nudge_pos():1806 [1] 514: 0.030 0.0035587 -0.0021795 11066 36.88 14.322 -10.950 2003-08-08T22:08:46.107725184 INFO 2025-06-26 05:34:45,152 calibrate.py _nudge_pos():1862 [1] 505: - - - 3 0.01 - - INFO 2025-06-26 05:34:45,152 calibrate.py _nudge_pos():1868 [1] Points in final series = 82658 WARNING 2025-06-26 05:34:45,218 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz WARNING 2025-06-26 05:34:45,276 calibrate.py _hs2_process():2289 [1] Cannot process HS2 data: [Errno 2] No such file or directory: '/data/auv_data/dorado/missionlogs/2003.220.11/hs2Calibration.dat' INFO 2025-06-26 05:34:45,871 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:34:46,353 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:34:46,355 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2003.220.11/ctd1.nc INFO 2025-06-26 05:34:46,357 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd1_salinity values to NaN INFO 2025-06-26 05:34:46,357 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:34:46,357 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 05:34:46,928 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:34:47,424 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 05:34:47,427 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2003.220.11/ctd2.nc INFO 2025-06-26 05:34:47,428 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 05:34:47,428 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 05:34:47,428 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 05:34:47,455 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 05:34:48,228 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 31920 59700 60420 62160 108060 162840 180300 181860 202380 202620 205200 215940 216780 225900 228360 229560 237660 239220 239580 240240 240600 242640 242880 243000 243480 243960 244080 244560 261900 275340 281580 306540 318120 356040 385500 402360 457740 462720 542160 589980 615540 684360 730860 747960 748920 759540 765480 851100 884940 885300 885420 892260 927480 929400 930600 931080 932220 932520 932700 932940 937080] INFO 2025-06-26 05:34:48,370 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -2 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 05:34:48,375 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 05:34:48,376 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.220.11 ERROR 2025-06-26 05:34:48,378 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.220.11 ERROR 2025-06-26 05:34:48,378 calibrate.py process_logs():3542 [1] Error processing tailcone: tailcone has no orig_data - likely a missing or zero-sized .log file in missionlogs/2003.220.11 INFO 2025-06-26 05:34:48,379 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2003.220.11/dorado_2003.220.11_cal.nc INFO 2025-06-26 05:34:48,456 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, time INFO 2025-06-26 05:34:48,461 process.py align():251 [1] Alignment steps for 2003.220.11 INFO 2025-06-26 05:34:48,488 align.py process_cal():139 [1] Processing dorado_2003.220.11_cal.nc from /data/auv_data/dorado/missionnetcdfs/2003.220.11 INFO 2025-06-26 05:34:48,516 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:34:48,520 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:34:48,585 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:34:48,590 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:34:48,652 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:34:48,657 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:34:48,693 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 05:34:48,693 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 05:34:48,718 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 05:34:48,723 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 05:34:48,783 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.220.11_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:48,787 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:48,841 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.220.11_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:48,845 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:48,900 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.220.11_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:48,904 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:48,960 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.220.11_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:48,964 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:49,020 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.220.11_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:49,024 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:49,079 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.220.11_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:49,083 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:49,140 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.220.11_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:49,143 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:49,198 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.220.11_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:49,202 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:49,255 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.220.11_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:49,259 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:49,317 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2003.220.11_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:49,321 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:49,382 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.220.11_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:49,386 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:49,446 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.220.11_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:49,451 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:49,514 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.220.11_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:49,519 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:49,578 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.220.11_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:49,582 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:49,635 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.220.11_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:49,639 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:49,692 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.220.11_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:49,696 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:49,758 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2003.220.11_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 05:34:49,761 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 05:34:49,819 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:34:49,857 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:34:49,894 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.60 INFO 2025-06-26 05:34:49,934 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 05:34:49,950 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2003.220.11/dorado_2003.220.11_align.nc INFO 2025-06-26 05:34:50,004 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw INFO 2025-06-26 05:34:50,007 process.py resample():273 [1] Resampling steps for 2003.220.11 INFO 2025-06-26 05:34:50,007 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 05:34:50,027 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.220.11/dorado_2003.220.11_align.nc mission netCDF file INFO 2025-06-26 05:34:50,031 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.220.11/dorado_2003.220.11_align.nc mission netCDF file INFO 2025-06-26 05:34:50,033 resample.py get_mission_start_end():1145 [1] navigation: 2003-08-08T17:33:17.709997952 to 2003-08-08T22:08:58.736860032 (0 days 00:00:00.009999232 before mission_end) INFO 2025-06-26 05:34:50,034 resample.py get_mission_start_end():1145 [1] ctd1 : 2003-08-08T17:33:15.990115712 to 2003-08-08T22:08:58.746859264 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:34:50,036 resample.py get_mission_start_end():1145 [1] ctd2 : 2003-08-08T17:33:15.600142464 to 2003-08-08T22:08:58.746859264 (0 days 00:00:00 before mission_end) INFO 2025-06-26 05:34:50,037 resample.py get_mission_start_end():1145 [1] isus : 2003-08-08T17:34:11.566308480 to 2003-08-08T22:08:58.556872320 (0 days 00:00:00.189986944 before mission_end) INFO 2025-06-26 05:34:50,038 resample.py get_mission_start_end():1145 [1] biolume : 2003-08-08T17:32:54.871528320 to 2003-08-08T22:08:57.496910720 (0 days 00:00:01.249948544 before mission_end) INFO 2025-06-26 05:34:50,039 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2003.220.11/dorado_2003.220.11_align.nc mission netCDF file INFO 2025-06-26 05:34:50,040 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,228 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,262 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,295 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,327 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,356 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,383 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,409 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,434 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,461 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,486 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,512 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,538 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,564 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,593 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,621 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,648 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,674 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,701 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,728 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,742 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,755 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,767 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,782 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 05:34:50,959 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2003.220.11/dorado_2003.220.11_1S.nc INFO 2025-06-26 05:34:52,194 create_products.py gulper_odv():401 [1] No gulper times found for 2003.220.11 INFO 2025-06-26 05:34:52,194 process.py archive():337 [1] Archiving steps for 2003.220.11 INFO 2025-06-26 05:34:52,195 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2003.220.11/dorado_2003.220.11, BASE_PATH = /data/auv_data INFO 2025-06-26 05:34:52,195 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2003.220.11/dorado_2003.220.11 files to /Volumes/AUVCTD/surveys/2003/netcdf INFO 2025-06-26 05:34:52,196 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.220.11_1S.nc INFO 2025-06-26 05:34:52,213 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.220.11/dorado_2003.220.11_1S.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:34:52,215 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.220.11_cal.nc INFO 2025-06-26 05:34:52,278 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.220.11/dorado_2003.220.11_cal.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:34:52,279 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2003/netcdf/dorado_2003.220.11_align.nc INFO 2025-06-26 05:34:52,336 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.220.11/dorado_2003.220.11_align.nc /Volumes/AUVCTD/surveys/2003/netcdf done. INFO 2025-06-26 05:34:52,362 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.220.11/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003220/2003.220.11 done. INFO 2025-06-26 05:34:52,385 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.220.11/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003220/2003.220.11 done. INFO 2025-06-26 05:34:52,390 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.220.11/gps.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003220/2003.220.11 done. INFO 2025-06-26 05:34:52,407 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.220.11/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003220/2003.220.11 done. INFO 2025-06-26 05:34:52,464 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.220.11/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003220/2003.220.11 done. INFO 2025-06-26 05:34:52,470 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.220.11/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003220/2003.220.11 done. INFO 2025-06-26 05:34:52,489 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.220.11/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003220/2003.220.11 done. INFO 2025-06-26 05:34:52,552 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.220.11/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2003/2003220/2003.220.11 done. INFO 2025-06-26 05:34:52,553 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 05:34:52,553 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2003.220.11/dorado_2003.220.11_processing.log /Volumes/AUVCTD/surveys/2003/netcdf