sfcctdStream2netcdf.pl Run begun at Mon Sep 13 14:26:22 2004 on host mammoth by ssdsadmin

Executing getSIAM_sfcctd.pl 1314 1299 ssds.shore.mbari.org 2472 /tmp/outputFiles/m0/sfcctd/2004 | tee -a /u/ssdsadmin/dev/DPforSSDS/sfcctd/logs/m0_sfcctd_20040603_hourly.log

Executing /mbari/matlab13SP1/bin/matlab < sfcctd_mooring.m | tee -a /u/ssdsadmin/dev/DPforSSDS/sfcctd/logs/m0_sfcctd_20040603_hourly.log 2>&1
Copying /tmp/outputFiles/m0/sfcctd/2004/m0_sfcctd_sep_2004.mat to /u/ssdsadmin/dev/DPforSSDS/sfcctd/outputFiles/m0/sfcctd/2004

Executing /mbari/matlab13SP1/bin/matlab < nohandssfcctd.m | tee -a /u/ssdsadmin/dev/DPforSSDS/sfcctd/logs/m0_sfcctd_20040603_hourly.log
Copying /tmp/outputFiles/ncFiles/m0_sfcctd_20040603_hourly.nc to /u/ssdsadmin/dev/DPforSSDS/sfcctd/ncFiles
Copying ncFiles/m0_sfcctd_20040603_hourly.nc to /ssdsdata/mooring/m0/sfcctd/netcdf
Copying /tmp/outputFiles/m0_ctdvar3.png to /ssdsdata/mooring/m0/sfcctd/plots
Copying /tmp/outputFiles/m0_ctdvar5.png to /ssdsdata/mooring/m0/sfcctd/plots

Executing /usr/java/j2sdk1.4.2_04/bin/java -jar ../ssdsLoads-prey.jar -i xml/inputDS.xml -u xml/sfcctdM0pr.xml -o xml/outputNC.txt -x | tee -a /u/ssdsadmin/dev/DPforSSDS/sfcctd/logs/m0_sfcctd_20040603_hourly.log

Executing /usr/java/j2sdk1.4.2_04/bin/java -jar ../ssdsLoads-prey.jar -i xml/inputDS.xml -u xml/sfcctdM0pr.xml -o xml/outputNC.txt -s | tee -a /u/ssdsadmin/dev/DPforSSDS/sfcctd/logs/m0_sfcctd_20040603_hourly.log
dobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]

                              < M A T L A B >
                  Copyright 1984-2003 The MathWorks, Inc.
              Version 6.5.1.199709 Release 13 (Service Pack 1)
                                Aug  4 2003

  Using Toolbox Path Cache.  Type "help toolbox_path_cache" for more info.
 
  To get started, type one of these: helpwin, helpdesk, or demo.
  For product information, visit www.mathworks.com.
 
>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> ??? Index exceeds matrix dimensions.

>> >> >> >> >> >> >> >> >> >> >> >> Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]

                              < M A T L A B >
                  Copyright 1984-2003 The MathWorks, Inc.
              Version 6.5.1.199709 Release 13 (Service Pack 1)
                                Aug  4 2003

  Using Toolbox Path Cache.  Type "help toolbox_path_cache" for more info.
 
  To get started, type one of these: helpwin, helpdesk, or demo.
  For product information, visit www.mathworks.com.
 
>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> load /tmp/outputFiles/m0/sfcctd/2004/m0_sfcctd_sep_2004;
>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> Warning: File: /data/AOSNII/software/netcdfmatlab/netcdflinux/netcdf/@ncvar/subsasgn.m Line: 118 Column: 9
Variable 'subs' has been previously used as a function name.
(Type "warning off MATLAB:mir_warning_variable_used_as_function" to suppress this warning.)
> In /data/AOSNII/software/netcdfmatlab/netcdflinux/netcdf/@netcdf/subsasgn.m at line 83
>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> 0 [main] INFO moos.ssds.model.ObjectBuilder  - NoSuchMethodException: problem with ProcessRun:  trying to find method setSoftware(class moos.ssds.model.Software)
2 [main] INFO moos.ssds.model.ObjectBuilder  - Will try to see if we can find a method that has and interface parameter
11 [main] INFO moos.ssds.model.ObjectBuilder  - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource)
11 [main] INFO moos.ssds.model.ObjectBuilder  - Will try with an interface before giving up ...
12 [main] INFO moos.ssds.model.ObjectBuilder  - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource)
12 [main] INFO moos.ssds.model.ObjectBuilder  - Will try with an interface before giving up ...
14 [main] INFO moos.ssds.model.ObjectBuilder  - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource)
14 [main] INFO moos.ssds.model.ObjectBuilder  - Will try with an interface before giving up ...
18 [main] INFO moos.ssds.model.ObjectBuilder  - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource)
18 [main] INFO moos.ssds.model.ObjectBuilder  - Will try with an interface before giving up ...
19 [main] INFO moos.ssds.model.ObjectBuilder  - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource)
19 [main] INFO moos.ssds.model.ObjectBuilder  - Will try with an interface before giving up ...
21 [main] INFO moos.ssds.model.ObjectBuilder  - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource)
21 [main] INFO moos.ssds.model.ObjectBuilder  - Will try with an interface before giving up ...
XML = 
<?xml version="1.0" encoding="ISO-8859-1"?>
<Metadata>
    <ProcessRun hostName="mammoth" name="sfcctdStream2netcdf.pl run on 13 Sep 2004" endDate="2004-09-13T21:26:53Z" startDate="2004-09-13T21:26:22Z">
        <Software name="sfcctdStream2netcdf.pl" url="http://moonjelly.shore.mbari.org/cgi-bin/cvsweb.cgi/DPforSSDS/sfcctd/sfcctdStream2netcdf.pl?rev=1.8&amp;content-type=text/x-cvsweb-markup" version="1.8">
            <description>Master Perl Script</description>
        </Software>
        <Resource name="sfcctdStream2netcdf.pl" url="http://moonjelly.shore.mbari.org/cgi-bin/cvsweb.cgi/DPforSSDS/sfcctd/sfcctdStream2netcdf.pl?rev=1.8&amp;content-type=text/x-cvsweb-markup" resourceType="software source code">
            <description>Master Perl Script</description>
        </Resource>
        <Resource name="sfcctd_mooring.m" url="http://moonjelly.shore.mbari.org/cgi-bin/cvsweb.cgi/DPforSSDS/sfcctd/sfcctd_mooring.m?rev=&amp;content-type=text/x-cvsweb-markup" resourceType="software source code">
            <description>Matlab m-file</description>
        </Resource>
        <Resource name="nohandssfcctd.m" url="http://moonjelly.shore.mbari.org/cgi-bin/cvsweb.cgi/DPforSSDS/sfcctd/nohandssfcctd.m?rev=&amp;content-type=text/x-cvsweb-markup" resourceType="software source code">
            <description>Matlab m-file</description>
        </Resource>
        <Resource name="Surface Temperature - last 7 days" url="http://predator.shore.mbari.org/ssdsdata/mooring/m0/sfcctd/plots/m0_ctdvar3.png" resourceType="image/png">
            <description>QC plot</description>
        </Resource>
        <Resource name="Surface Salinity - last 7 days" url="http://predator.shore.mbari.org/ssdsdata/mooring/m0/sfcctd/plots/m0_ctdvar5.png" resourceType="image/png">
            <description>QC plot</description>
        </Resource>
        <Resource name="Processing Log" url="http://predator.shore.mbari.org/ssdsdata/mooring/m0/sfcctd/logs/m0_sfcctd_20040603_hourly.log" resourceType="processing log">
            <description>Ouptut from Perl and Matlab scripts</description>
        </Resource>
        <input>
            <DataStream name="1314_0_1_1299" url="http://ssds-test.shore.mbari.org/ssds/rawpackets/1314_0_1_1299" original="true">
                <description>Original Surface CTD DataStream</description>
            </DataStream>
        </input>
        <output>
            <DataFile dodsAccessible="true" name="m0_sfcctd_20040603_hourly.nc" url="http://ssds.shore.mbari.org/cgi-bin/nph-dods/ssdsdata/mooring/m0/sfcctd/netcdf/m0_sfcctd_20040603_hourly.nc" original="false">
                <Resource name="sfcctdStream2netcdf.pl" url="http://moonjelly.shore.mbari.org/cgi-bin/cvsweb.cgi/DPforSSDS/sfcctd/sfcctdStream2netcdf.pl?rev=1.8&amp;content-type=text/x-cvsweb-markup" resourceType="software source code">
                    <description>Master Perl Script</description>
                </Resource>
                <Resource name="sfcctd_mooring.m" url="http://moonjelly.shore.mbari.org/cgi-bin/cvsweb.cgi/DPforSSDS/sfcctd/sfcctd_mooring.m?rev=&amp;content-type=text/x-cvsweb-markup" resourceType="software source code">
                    <description>Matlab m-file</description>
                </Resource>
                <Resource name="nohandssfcctd.m" url="http://moonjelly.shore.mbari.org/cgi-bin/cvsweb.cgi/DPforSSDS/sfcctd/nohandssfcctd.m?rev=&amp;content-type=text/x-cvsweb-markup" resourceType="software source code">
                    <description>Matlab m-file</description>
                </Resource>
                <Resource name="Surface Temperature - last 7 days" url="http://predator.shore.mbari.org/ssdsdata/mooring/m0/sfcctd/plots/m0_ctdvar3.png" resourceType="image/png">
                    <description>QC plot</description>
                </Resource>
                <Resource name="Surface Salinity - last 7 days" url="http://predator.shore.mbari.org/ssdsdata/mooring/m0/sfcctd/plots/m0_ctdvar5.png" resourceType="image/png">
                    <description>QC plot</description>
                </Resource>
                <Resource name="Processing Log" url="http://predator.shore.mbari.org/ssdsdata/mooring/m0/sfcctd/logs/m0_sfcctd_20040603_hourly.log" resourceType="processing log">
                    <description>Ouptut from Perl and Matlab scripts</description>
                </Resource>
                <RecordDescription endian="little" parseable="false"/>
            </DataFile>
        </output>
    </ProcessRun>
</Metadata>

0 [main] INFO moos.ssds.model.ObjectBuilder  - NoSuchMethodException: problem with ProcessRun:  trying to find method setSoftware(class moos.ssds.model.Software)
2 [main] INFO moos.ssds.model.ObjectBuilder  - Will try to see if we can find a method that has and interface parameter
11 [main] INFO moos.ssds.model.ObjectBuilder  - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource)
11 [main] INFO moos.ssds.model.ObjectBuilder  - Will try with an interface before giving up ...
12 [main] INFO moos.ssds.model.ObjectBuilder  - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource)
12 [main] INFO moos.ssds.model.ObjectBuilder  - Will try with an interface before giving up ...
14 [main] INFO moos.ssds.model.ObjectBuilder  - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource)
14 [main] INFO moos.ssds.model.ObjectBuilder  - Will try with an interface before giving up ...
18 [main] INFO moos.ssds.model.ObjectBuilder  - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource)
18 [main] INFO moos.ssds.model.ObjectBuilder  - Will try with an interface before giving up ...
19 [main] INFO moos.ssds.model.ObjectBuilder  - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource)
19 [main] INFO moos.ssds.model.ObjectBuilder  - Will try with an interface before giving up ...
21 [main] INFO moos.ssds.model.ObjectBuilder  - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource)
21 [main] INFO moos.ssds.model.ObjectBuilder  - Will try with an interface before giving up ...

Submitting metadata to SSDS (updating PR)...
done. ProcessRun id = 5000054 updated.