imctdStream2netcdf.pl Run begun at Wed Feb  2 20:01:06 2005 on host mammoth by ssdsadmin

Executing getSIAM_imctd.pl 1319 1327 ssds.shore.mbari.org 768 ../outputFiles/m0/imctd/2005 | tee -a /u/ssdsadmin/dev/DPforSSDS/imctd/logs/m0_imctd_20040603_hourly.log

Executing /mbari/matlab13SP1/bin/matlab < imctd_mooring.m | tee -a /u/ssdsadmin/dev/DPforSSDS/imctd/logs/m0_imctd_20040603_hourly.log 2>&1

Executing /mbari/matlab13SP1/bin/matlab < nohandsimctd.m | tee -a /u/ssdsadmin/dev/DPforSSDS/imctd/logs/m0_imctd_20040603_hourly.log
Copying ../outputFiles/ncFiles/m0_imctd_20040603_hourly.nc to /u/ssdsadmin/dev/DPforSSDS/imctd/ncFiles
Copying ncFiles/m0_imctd_20040603_hourly.nc to /ssdsdata/mooring/m0/imctd/netcdf

Executing /usr/java/j2sdk1.4.2_04/bin/java -jar ../ssdsLoads-prey.jar -i xml/inputDS.xml -u xml/imctdM0pr.xml -o xml/outputNC.txt -x | tee -a /u/ssdsadmin/dev/DPforSSDS/imctd/logs/m0_imctd_20040603_hourly.log

Executing /usr/java/j2sdk1.4.2_04/bin/java -jar ../ssdsLoads-prey.jar -i xml/inputDS.xml -u xml/imctdM0pr.xml -o xml/outputNC.txt -s | tee -a /u/ssdsadmin/dev/DPforSSDS/imctd/logs/m0_imctd_20040603_hourly.log
t found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]

                              < M A T L A B >
                  Copyright 1984-2003 The MathWorks, Inc.
              Version 6.5.1.199709 Release 13 (Service Pack 1)
                                Aug  4 2003

  Using Toolbox Path Cache.  Type "help toolbox_path_cache" for more info.
 
  To get started, type one of these: helpwin, helpdesk, or demo.
  For product information, visit www.mathworks.com.
 
>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> Warning: Variable 'flag' has been previously used as a function name.
(Type "warning off MATLAB:mir_warning_variable_used_as_function" to suppress this warning.)
??? Index exceeds matrix dimensions.

Error in ==> /u/ssdsadmin/dev/DPforSSDS/imctd/tccalc.m
On line 8  ==> ccf=flag(:,4);

K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> >> Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]

                              < M A T L A B >
                  Copyright 1984-2003 The MathWorks, Inc.
              Version 6.5.1.199709 Release 13 (Service Pack 1)
                                Aug  4 2003

  Using Toolbox Path Cache.  Type "help toolbox_path_cache" for more info.
 
  To get started, type one of these: helpwin, helpdesk, or demo.
  For product information, visit www.mathworks.com.
 
>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> load ../outputFiles/m0/imctd/2005/m0_imctd_jan_2005;
load ../outputFiles/m0/imctd/2005/m0_imctd_feb_2005;
>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> y=nohandsstufftcp(itarr,t1(:,[1 3:6]),f1(:,[2:5]),2);
   500

        1000

        1500

        2000

        2500

y=nohandsstufftcp(itarr,t2(:,[1 3:6]),f2(:,[2:5]),2);
   500

        1000

        1500

        2000

        2500

y=nohandsstufftcp(itarr,t3(:,[1 3:6]),f3(:,[2:5]),2);
   500

        1000

        1500

        2000

        2500

y=nohandsstufftcp(itarr,t4(:,[1 3:6]),f4(:,[2:5]),2);
   500

        1000

        1500

        2000

        2500

>> >> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> Warning: File: /data/AOSNII/software/netcdfmatlab/netcdflinux/netcdf/@ncvar/subsasgn.m Line: 118 Column: 9
Variable 'subs' has been previously used as a function name.
(Type "warning off MATLAB:mir_warning_variable_used_as_function" to suppress this warning.)
> In /data/AOSNII/software/netcdfmatlab/netcdflinux/netcdf/@netcdf/subsasgn.m at line 83
K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> K>> >> XML = 
<?xml version="1.0" encoding="ISO-8859-1"?>
<Metadata>
    <ProcessRun hostName="mammoth" name="imctdStream2netcdf.pl run on 3 Feb 2005" startDate="2005-02-03T04:01:06Z" endDate="2005-02-03T04:03:32Z">
        <Software name="imctdStream2netcdf.pl" version="1.4" url="http://moonjelly.shore.mbari.org/cgi-bin/cvsweb.cgi/DPforSSDS/imctd/imctdStream2netcdf.pl?rev=1.4&amp;content-type=text/x-cvsweb-markup">
            <description>Master Perl Script</description>
        </Software>
        <Resource name="imctdStream2netcdf.pl" url="http://moonjelly.shore.mbari.org/cgi-bin/cvsweb.cgi/DPforSSDS/imctd/imctdStream2netcdf.pl?rev=1.4&amp;content-type=text/x-cvsweb-markup" resourceType="software source code">
            <description>Master Perl Script</description>
        </Resource>
        <Resource name="imctd_mooring.m" url="http://moonjelly.shore.mbari.org/cgi-bin/cvsweb.cgi/DPforSSDS/imctd/imctd_mooring.m?rev=&amp;content-type=text/x-cvsweb-markup" resourceType="software source code">
            <description>Matlab m-file</description>
        </Resource>
        <Resource name="nohandsimctd.m" url="http://moonjelly.shore.mbari.org/cgi-bin/cvsweb.cgi/DPforSSDS/imctd/nohandsimctd.m?rev=&amp;content-type=text/x-cvsweb-markup" resourceType="software source code">
            <description>Matlab m-file</description>
        </Resource>
        <Resource name="Processing Log" url="http://predator.shore.mbari.org/ssdsdata/mooring/m0/imctd/logs/m0_imctd_20040603_hourly.log" resourceType="processing log">
            <description>Ouptut from Perl and Matlab scripts</description>
        </Resource>
        <input>
            <DataStream name="1319_4_1_1327" url="http://ssds-test.shore.mbari.org/ssds/rawpackets/1319_4_1_1327" original="true">
                <description>Original Inductive Modem CTD DataStream</description>
            </DataStream>
        </input>
        <output>
            <DataFile dodsAccessible="true" name="m0_imctd_20040603_hourly.nc" url="http://ssds.shore.mbari.org/cgi-bin/nph-dods/ssdsdata/mooring/m0/imctd/netcdf/m0_imctd_20040603_hourly.nc" original="false">
                <Resource name="imctdStream2netcdf.pl" url="http://moonjelly.shore.mbari.org/cgi-bin/cvsweb.cgi/DPforSSDS/imctd/imctdStream2netcdf.pl?rev=1.4&amp;content-type=text/x-cvsweb-markup" resourceType="software source code">
                    <description>Master Perl Script</description>
                </Resource>
                <Resource name="imctd_mooring.m" url="http://moonjelly.shore.mbari.org/cgi-bin/cvsweb.cgi/DPforSSDS/imctd/imctd_mooring.m?rev=&amp;content-type=text/x-cvsweb-markup" resourceType="software source code">
                    <description>Matlab m-file</description>
                </Resource>
                <Resource name="nohandsimctd.m" url="http://moonjelly.shore.mbari.org/cgi-bin/cvsweb.cgi/DPforSSDS/imctd/nohandsimctd.m?rev=&amp;content-type=text/x-cvsweb-markup" resourceType="software source code">
                    <description>Matlab m-file</description>
                </Resource>
                <Resource name="Processing Log" url="http://predator.shore.mbari.org/ssdsdata/mooring/m0/imctd/logs/m0_imctd_20040603_hourly.log" resourceType="processing log">
                    <description>Ouptut from Perl and Matlab scripts</description>
                </Resource>
                <RecordDescription endian="little" parseable="false">
                    <RecordVariable name="temperature" longName="Temperature" units="Celsius" columnIndex="-1" validMin="0." validMax="30." missingValue="-999."/>
                    <RecordVariable name="conductivity" longName="Conductivity" units="Siemens/m" columnIndex="-1" validMin="2." validMax="5." missingValue="-999."/>
                    <RecordVariable name="salinity" longName="Salinity" units="none" columnIndex="-1" validMin="30." validMax="37." missingValue="-999."/>
                    <RecordVariable name="pressure" longName="Pressure" units="db" columnIndex="-1" validMin="0." validMax="400." missingValue="-999."/>
                    <RecordVariable name="temperature_flag" longName="Temperature Flag" units="none" columnIndex="-1" validMin="0." validMax="3." missingValue="1."/>
                    <RecordVariable name="salinity_flag" longName="Salinity Flag" units="none" columnIndex="-1" validMin="0." validMax="3." missingValue="1."/>
                    <RecordVariable name="conductivity_flag" longName="Conductivity Flag" units="none" columnIndex="-1" validMin="0." validMax="3." missingValue="1."/>
                    <RecordVariable name="pressure_flag" longName="Pressure Flag" units="none" columnIndex="-1" validMin="0." validMax="3." missingValue="1."/>
                </RecordDescription>
            </DataFile>
        </output>
    </ProcessRun>
</Metadata>


Submitting metadata to SSDS (updating PR)...
done. ProcessRun id = 5001205 updated.