adcpStream2netcdf.pl Run begun at Tue Feb 22 08:52:26 2005 on host mammoth by ssdsadmin

Executing getSIAM_ADCP.pl 1267 1327 ssds.shore.mbari.org 168 outputFiles/m0/adcp/2005 | tee -a /u/ssdsadmin/dev/DPforSSDS/adcp/logs/m0_adcp_20040603_workhorse_hourly.log

Executing getSIAM_GPS.pl 1313 1327 ssds.shore.mbari.org 168 outputFiles/m0/adcp/2005 | tee -a /u/ssdsadmin/dev/DPforSSDS/adcp/logs/m0_adcp_20040603_workhorse_hourly.log 2>&1

Executing /mbari/matlab13SP1/bin/matlab < adcp_mooring.m | tee -a /u/ssdsadmin/dev/DPforSSDS/adcp/logs/m0_adcp_20040603_workhorse_hourly.log 2>&1
Copying outputFiles/m0/adcp/2005/m0_adcp_uv_feb_2005.mat to /u/ssdsadmin/dev/DPforSSDS/adcp/outputFiles/m0/adcp/2005

Executing /mbari/matlab13SP1/bin/matlab < nohandsadcp.m | tee -a /u/ssdsadmin/dev/DPforSSDS/adcp/logs/m0_adcp_20040603_workhorse_hourly.log
Copying ncFiles/m0_adcp_20040603_workhorse_hourly.nc to /ssdsdata/mooring/m0/adcp/netcdf
Copying outputFiles/m0_uvplot.png to /ssdsdata/mooring/m0/adcp/plots
Copying outputFiles/m0_uvprof.png to /ssdsdata/mooring/m0/adcp/plots

Executing /usr/java/j2sdk1.4.2_04/bin/java -jar ../ssdsLoads-prey.jar -i xml/inputDS.xml -u xml/adcpM0pr.xml -o xml/outputNC.txt -x | tee -a /u/ssdsadmin/dev/DPforSSDS/adcp/logs/m0_adcp_20040603_workhorse_hourly.log

Executing /usr/java/j2sdk1.4.2_04/bin/java -jar ../ssdsLoads-prey.jar -i xml/inputDS.xml -u xml/adcpM0pr.xml -o xml/outputNC.txt -s | tee -a /u/ssdsadmin/dev/DPforSSDS/adcp/logs/m0_adcp_20040603_workhorse_hourly.log
> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> 
                              < M A T L A B >
                  Copyright 1984-2003 The MathWorks, Inc.
              Version 6.5.1.199709 Release 13 (Service Pack 1)
                                Aug  4 2003

  Using Toolbox Path Cache.  Type "help toolbox_path_cache" for more info.
 
  To get started, type one of these: helpwin, helpdesk, or demo.
  For product information, visit www.mathworks.com.
 
>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> Bad
>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> ??? Index exceeds matrix dimensions.

>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> ??? Index exceeds matrix dimensions.

>> >> ??? Index exceeds matrix dimensions.

>> >> ??? Index exceeds matrix dimensions.

>> >> >> >> >> >> >> >> >> >> >> >> ??? Index exceeds matrix dimensions.

>> ??? Undefined function or variable 'firm'.

>> >> >> >> >> >> ??? Index exceeds matrix dimensions.

Error in ==> /data/AOSNII/software/netcdfmatlab/netcdflinux/netcdf/@ncvar/subsasgn.m
On line 258  ==>          start(i) = k(1)-1;

Error in ==> /data/AOSNII/software/netcdfmatlab/netcdflinux/netcdf/@netcdf/subsasgn.m
On line 83  ==>       result = subsasgn(v, s, other);

>> >> >> ??? Index exceeds matrix dimensions.

>> >> >> >> ??? Undefined function or variable 'bd'.

>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> ??? Index exceeds matrix dimensions.

>> ??? Index exceeds matrix dimensions.

>> ??? Index exceeds matrix dimensions.

>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> ??? Index exceeds matrix dimensions.

>> >> >> >> >> >> >> >> >> ??? Index exceeds matrix dimensions.

>> >> >> >> >> >> >> >> >> ??? Index exceeds matrix dimensions.

>> >> >> >> >> >> >> >> >> ??? Index exceeds matrix dimensions.

>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> ??? Index exceeds matrix dimensions.

>> >> >> >> >> ??? Index exceeds matrix dimensions.

>> >> >> >> >> ??? Index exceeds matrix dimensions.

>> >> >> >> >> >> >> ??? Index exceeds matrix dimensions.

>> >> ??? Undefined function or variable 'tp'.

>> >> >> >> >> XML = 
<?xml version="1.0" encoding="ISO-8859-1"?>
<Metadata>
    <ProcessRun hostName="mammoth" name="adcpStream2netcdf.pl run on 22 Feb 2005 1653" startDate="2005-02-22T16:52:26Z" endDate="2005-02-22T16:53:40Z">
        <Software name="adcpStream2netcdf.pl" version="1.18" url="http://moonjelly.shore.mbari.org/cgi-bin/cvsweb.cgi/DPforSSDS/adcp/adcpStream2netcdf.pl?rev=1.18&amp;content-type=text/x-cvsweb-markup">
            <description>Master Perl Script</description>
        </Software>
        <Resource name="adcpStream2netcdf.pl" url="http://moonjelly.shore.mbari.org/cgi-bin/cvsweb.cgi/DPforSSDS/adcp/adcpStream2netcdf.pl?rev=1.18&amp;content-type=text/x-cvsweb-markup" resourceType="software source code">
            <description>Master Perl Script</description>
        </Resource>
        <Resource name="adcp_mooring.m" url="http://moonjelly.shore.mbari.org/cgi-bin/cvsweb.cgi/DPforSSDS/adcp/adcp_mooring.m?rev=1.10&amp;content-type=text/x-cvsweb-markup" resourceType="software source code">
            <description>Matlab m-file</description>
        </Resource>
        <Resource name="nohandsadcp.m" url="http://moonjelly.shore.mbari.org/cgi-bin/cvsweb.cgi/DPforSSDS/adcp/nohandsadcp.m?rev=1.8&amp;content-type=text/x-cvsweb-markup" resourceType="software source code">
            <description>Matlab m-file</description>
        </Resource>
        <Resource name="Time series plot" url="http://predator.shore.mbari.org/ssdsdata/mooring/m0/adcp/plots/m0_uvplot.png" resourceType="image/png">
            <description>QC plot</description>
        </Resource>
        <Resource name="Profile plot" url="http://predator.shore.mbari.org/ssdsdata/mooring/m0/adcp/plots/m0_uvprof.png" resourceType="image/png">
            <description>QC plot</description>
        </Resource>
        <Resource name="Processing Log" url="http://predator.shore.mbari.org/ssdsdata/mooring/m0/adcp/logs/m0_adcp_20040603_workhorse_hourly.log" resourceType="processing log">
            <description>Ouptut from Perl and Matlab scripts</description>
        </Resource>
        <input>
            <DataStream name="1267_0_1_1327" url="http://ssds-test.shore.mbari.org/ssds/rawpackets/1267_0_1_1327" original="true">
                <description>Original ADCP DataStream</description>
            </DataStream>
            <DataStream name="1313_0_1_1327" url="http://ssds-test.shore.mbari.org/ssds/rawpackets/1313_0_1_1327" original="true">
                <description>Original GPS DataStream</description>
            </DataStream>
        </input>
        <output>
            <DataFile dodsAccessible="true" name="m0_adcp_20040603_workhorse_hourly.nc" url="http://ssds.shore.mbari.org/cgi-bin/nph-dods/ssdsdata/mooring/m0/adcp/netcdf/m0_adcp_20040603_workhorse_hourly.nc" original="false">
                <Resource name="adcpStream2netcdf.pl" url="http://moonjelly.shore.mbari.org/cgi-bin/cvsweb.cgi/DPforSSDS/adcp/adcpStream2netcdf.pl?rev=1.18&amp;content-type=text/x-cvsweb-markup" resourceType="software source code">
                    <description>Master Perl Script</description>
                </Resource>
                <Resource name="adcp_mooring.m" url="http://moonjelly.shore.mbari.org/cgi-bin/cvsweb.cgi/DPforSSDS/adcp/adcp_mooring.m?rev=1.10&amp;content-type=text/x-cvsweb-markup" resourceType="software source code">
                    <description>Matlab m-file</description>
                </Resource>
                <Resource name="nohandsadcp.m" url="http://moonjelly.shore.mbari.org/cgi-bin/cvsweb.cgi/DPforSSDS/adcp/nohandsadcp.m?rev=1.8&amp;content-type=text/x-cvsweb-markup" resourceType="software source code">
                    <description>Matlab m-file</description>
                </Resource>
                <Resource name="Time series plot" url="http://predator.shore.mbari.org/ssdsdata/mooring/m0/adcp/plots/m0_uvplot.png" resourceType="image/png">
                    <description>QC plot</description>
                </Resource>
                <Resource name="Profile plot" url="http://predator.shore.mbari.org/ssdsdata/mooring/m0/adcp/plots/m0_uvprof.png" resourceType="image/png">
                    <description>QC plot</description>
                </Resource>
                <Resource name="Processing Log" url="http://predator.shore.mbari.org/ssdsdata/mooring/m0/adcp/logs/m0_adcp_20040603_workhorse_hourly.log" resourceType="processing log">
                    <description>Ouptut from Perl and Matlab scripts</description>
                </Resource>
                <RecordDescription endian="little" parseable="false">
                    <RecordVariable name="u_component_uncorrected" longName="East-West Velocity Towards(+E/-W) True" units="cm/s" columnIndex="-1" validMin="-3000." validMax="3000." missingValue="-3276.8000000000002"/>
                    <RecordVariable name="v_component_uncorrected" longName="North-South Velocity Towards(+N/-S) True" units="cm/s" columnIndex="-1" validMin="-3000." validMax="3000." missingValue="-3276.8000000000002"/>
                    <RecordVariable name="v_component_uncorrected_flag" longName="North-South Velocity Flag" units="none" columnIndex="-1" validMin="0." validMax="3." missingValue="1."/>
                    <RecordVariable name="u_component_uncorrected_flag" longName="East-West Velocity Flag" units="none" columnIndex="-1" validMin="0." validMax="3." missingValue="1."/>
                    <RecordVariable name="echo_intensity_beam1" longName="Echo Intensity data per beam" units="Counts" columnIndex="-1" validMin="0." validMax="255." missingValue="0."/>
                    <RecordVariable name="echo_intensity_beam2" longName="Echo Intensity data per beam" units="Counts" columnIndex="-1" validMin="0." validMax="255." missingValue="0."/>
                    <RecordVariable name="echo_intensity_beam3" longName="Echo Intensity data per beam" units="Counts" columnIndex="-1" validMin="0." validMax="255." missingValue="0."/>
                    <RecordVariable name="echo_intensity_beam4" longName="Echo Intensity data per beam" units="Counts" columnIndex="-1" validMin="0." validMax="255." missingValue="0."/>
                    <RecordVariable name="percent_good_3beam" longName="Percentage good 3-beam solutions" units="Percentage" columnIndex="-1" validMin="0." validMax="99." missingValue="0."/>
                    <RecordVariable name="percent_good_4beam" longName="Percentage good 4-beam solutions" units="Percentage" columnIndex="-1" validMin="0." validMax="99." missingValue="0."/>
                    <RecordVariable name="std_head" longName="ADCP Heading standard deviation" units="Degrees" columnIndex="-1" validMin="0." validMax="180." missingValue="0."/>
                    <RecordVariable name="std_pitch" longName="ADCP Pitch standard deviation" units="Degrees" columnIndex="-1" validMin="0." validMax="180." missingValue="0."/>
                    <RecordVariable name="std_roll" longName="ADCP Roll standard deviation" units="Degrees" columnIndex="-1" validMin="0." validMax="180." missingValue="0."/>
                    <RecordVariable name="xdcr_temperature" longName="ADCP Transducer Temperature" units="Celsius" columnIndex="-1" validMin="-5." validMax="40." missingValue="0."/>
                    <RecordVariable name="latitude" longName="Latitude" units="Degrees North" columnIndex="-1" validMin="-90." validMax="90." missingValue="-999."/>
                    <RecordVariable name="longitude" longName="Longitude" units="Degrees East" columnIndex="-1" validMin="-180." validMax="180." missingValue="-999."/>
                </RecordDescription>
            </DataFile>
        </output>
    </ProcessRun>
</Metadata>


Submitting metadata to SSDS (updating PR)...
done. ProcessRun id = 5000313 updated.