combineTS.pl(): Processing begun: Wed Jul 18 11:47:34 2018 Find recent serial CTD instrument netCDF files; Executing: find /mbari/ssdsdata/deployments/m1/201608 -name "m1_ctd*_*_original.nc" -print /mbari/ssdsdata/deployments/m1/201608/m1_ctd0040_20160829_original.nc /mbari/ssdsdata/deployments/m1/201608/m1_ctd0060_20160829_original.nc /mbari/ssdsdata/deployments/m1/201608/m1_ctd0080_20160829_original.nc /mbari/ssdsdata/deployments/m1/201608/m1_ctd0250_20160829_original.nc /mbari/ssdsdata/deployments/m1/201608/m1_ctd0200_20160829_original.nc /mbari/ssdsdata/deployments/m1/201608/m1_ctd0100_20160829_original.nc /mbari/ssdsdata/deployments/m1/201608/m1_ctd0020_20160829_original.nc /mbari/ssdsdata/deployments/m1/201608/m1_ctd0001_20160829_original.nc /mbari/ssdsdata/deployments/m1/201608/m1_ctd0225_20160829_original.nc /mbari/ssdsdata/deployments/m1/201608/m1_ctd0300_20160829_original.nc /mbari/ssdsdata/deployments/m1/201608/m1_ctd0150_20160829_original.nc /mbari/ssdsdata/deployments/m1/201608/m1_ctd0050_20160829_original.nc /mbari/ssdsdata/deployments/m1/201608/m1_ctd0010_20160829_original.nc Calling constructFerretJNL() constructFerretJNL(): checking file /mbari/ssdsdata/deployments/m1/201608/m1_ctd0040_20160829_original.nc constructFerretJNL(): Instrument's nominalDepth (parsed from filename) = 0040 constructFerretJNL(): checking file /mbari/ssdsdata/deployments/m1/201608/m1_ctd0060_20160829_original.nc constructFerretJNL(): Instrument's nominalDepth (parsed from filename) = 0060 constructFerretJNL(): checking file /mbari/ssdsdata/deployments/m1/201608/m1_ctd0080_20160829_original.nc constructFerretJNL(): Instrument's nominalDepth (parsed from filename) = 0080 constructFerretJNL(): checking file /mbari/ssdsdata/deployments/m1/201608/m1_ctd0250_20160829_original.nc constructFerretJNL(): Instrument's nominalDepth (parsed from filename) = 0250 constructFerretJNL(): checking file /mbari/ssdsdata/deployments/m1/201608/m1_ctd0200_20160829_original.nc constructFerretJNL(): Instrument's nominalDepth (parsed from filename) = 0200 constructFerretJNL(): checking file /mbari/ssdsdata/deployments/m1/201608/m1_ctd0100_20160829_original.nc constructFerretJNL(): Instrument's nominalDepth (parsed from filename) = 0100 constructFerretJNL(): checking file /mbari/ssdsdata/deployments/m1/201608/m1_ctd0020_20160829_original.nc constructFerretJNL(): Instrument's nominalDepth (parsed from filename) = 0020 constructFerretJNL(): checking file /mbari/ssdsdata/deployments/m1/201608/m1_ctd0001_20160829_original.nc constructFerretJNL(): Instrument's nominalDepth (parsed from filename) = 0001 constructFerretJNL(): checking file /mbari/ssdsdata/deployments/m1/201608/m1_ctd0225_20160829_original.nc constructFerretJNL(): Instrument's nominalDepth (parsed from filename) = 0225 constructFerretJNL(): checking file /mbari/ssdsdata/deployments/m1/201608/m1_ctd0300_20160829_original.nc constructFerretJNL(): Instrument's nominalDepth (parsed from filename) = 0300 constructFerretJNL(): checking file /mbari/ssdsdata/deployments/m1/201608/m1_ctd0150_20160829_original.nc constructFerretJNL(): Instrument's nominalDepth (parsed from filename) = 0150 constructFerretJNL(): checking file /mbari/ssdsdata/deployments/m1/201608/m1_ctd0050_20160829_original.nc constructFerretJNL(): Instrument's nominalDepth (parsed from filename) = 0050 constructFerretJNL(): checking file /mbari/ssdsdata/deployments/m1/201608/m1_ctd0010_20160829_original.nc constructFerretJNL(): Instrument's nominalDepth (parsed from filename) = 0010 constructFerretJNL(): Salient Ferret commands (see .jnl link for full file): USE "http://dods.mbari.org/opendap/data/ssdsdata/deployments/m1/201608/m1_ctd0001_20160829_original.nc" SAVE/FILE="/mbari/ssdsdata/deployments/m1/201608/OS_MBARI-M1_20160829_R_TS.nc"/APPEND/KLIMITS=1:NDEPTHS/LLIMITS=1:`PSAL,return=lend`/Z=1/T="29-Aug-2016 23:00:00":"08-Aug-2017 17:00:00" PSAL, PSAL_QC, TEMP, TEMP_QC, TIME_QC, POSITION_QC, DEPTH_QC USE "http://dods.mbari.org/opendap/data/ssdsdata/deployments/m1/201608/m1_ctd0010_20160829_original.nc" SAVE/FILE="/mbari/ssdsdata/deployments/m1/201608/OS_MBARI-M1_20160829_R_TS.nc"/APPEND/Z=10/T="29-Aug-2016 23:00:00":"08-Aug-2017 17:00:00" PSAL, PSAL_QC, TEMP, TEMP_QC, TIME_QC, POSITION_QC, DEPTH_QC USE "http://dods.mbari.org/opendap/data/ssdsdata/deployments/m1/201608/m1_ctd0020_20160829_original.nc" SAVE/FILE="/mbari/ssdsdata/deployments/m1/201608/OS_MBARI-M1_20160829_R_TS.nc"/APPEND/Z=20/T="29-Aug-2016 23:00:00":"08-Aug-2017 13:00:00" PSAL, PSAL_QC, TEMP, TEMP_QC, TIME_QC, POSITION_QC, DEPTH_QC USE "http://dods.mbari.org/opendap/data/ssdsdata/deployments/m1/201608/m1_ctd0040_20160829_original.nc" SAVE/FILE="/mbari/ssdsdata/deployments/m1/201608/OS_MBARI-M1_20160829_R_TS.nc"/APPEND/Z=40/T="29-Aug-2016 23:00:00":"08-Aug-2017 17:00:00" PSAL, PSAL_QC, TEMP, TEMP_QC, TIME_QC, POSITION_QC, DEPTH_QC USE "http://dods.mbari.org/opendap/data/ssdsdata/deployments/m1/201608/m1_ctd0050_20160829_original.nc" SAVE/FILE="/mbari/ssdsdata/deployments/m1/201608/OS_MBARI-M1_20160829_R_TS.nc"/APPEND/Z=50/T="29-Aug-2016 23:00:00":"08-Aug-2017 17:00:00" , _QC, PSAL, PSAL_QC, TEMP, TEMP_QC, TIME_QC, POSITION_QC, DEPTH_QC USE "http://dods.mbari.org/opendap/data/ssdsdata/deployments/m1/201608/m1_ctd0060_20160829_original.nc" SAVE/FILE="/mbari/ssdsdata/deployments/m1/201608/OS_MBARI-M1_20160829_R_TS.nc"/APPEND/Z=60/T="29-Aug-2016 23:00:00":"08-Aug-2017 17:00:00" PSAL, PSAL_QC, TEMP, TEMP_QC, TIME_QC, POSITION_QC, DEPTH_QC USE "http://dods.mbari.org/opendap/data/ssdsdata/deployments/m1/201608/m1_ctd0080_20160829_original.nc" SAVE/FILE="/mbari/ssdsdata/deployments/m1/201608/OS_MBARI-M1_20160829_R_TS.nc"/APPEND/Z=80/T="29-Aug-2016 23:00:00":"08-Aug-2017 17:00:00" PSAL, PSAL_QC, TEMP, TEMP_QC, TIME_QC, POSITION_QC, DEPTH_QC USE "http://dods.mbari.org/opendap/data/ssdsdata/deployments/m1/201608/m1_ctd0100_20160829_original.nc" SAVE/FILE="/mbari/ssdsdata/deployments/m1/201608/OS_MBARI-M1_20160829_R_TS.nc"/APPEND/Z=100/T="29-Aug-2016 23:00:00":"08-Aug-2017 17:00:00" PSAL, PSAL_QC, TEMP, TEMP_QC, TIME_QC, POSITION_QC, DEPTH_QC USE "http://dods.mbari.org/opendap/data/ssdsdata/deployments/m1/201608/m1_ctd0150_20160829_original.nc" SAVE/FILE="/mbari/ssdsdata/deployments/m1/201608/OS_MBARI-M1_20160829_R_TS.nc"/APPEND/Z=150/T="29-Aug-2016 23:00:00":"08-Aug-2017 17:00:00" PSAL, PSAL_QC, TEMP, TEMP_QC, TIME_QC, POSITION_QC, DEPTH_QC USE "http://dods.mbari.org/opendap/data/ssdsdata/deployments/m1/201608/m1_ctd0200_20160829_original.nc" SAVE/FILE="/mbari/ssdsdata/deployments/m1/201608/OS_MBARI-M1_20160829_R_TS.nc"/APPEND/Z=200/T="29-Aug-2016 23:00:00":"08-Aug-2017 17:00:00" PSAL, PSAL_QC, TEMP, TEMP_QC, TIME_QC, POSITION_QC, DEPTH_QC USE "http://dods.mbari.org/opendap/data/ssdsdata/deployments/m1/201608/m1_ctd0225_20160829_original.nc" SAVE/FILE="/mbari/ssdsdata/deployments/m1/201608/OS_MBARI-M1_20160829_R_TS.nc"/APPEND/Z=225/T="29-Aug-2016 23:00:00":"08-Aug-2017 17:00:00" , _QC, , _QC, , _QC, PSAL, PSAL_QC, , _QC, TEMP, TEMP_QC, TIME_QC, POSITION_QC, DEPTH_QC USE "http://dods.mbari.org/opendap/data/ssdsdata/deployments/m1/201608/m1_ctd0250_20160829_original.nc" SAVE/FILE="/mbari/ssdsdata/deployments/m1/201608/OS_MBARI-M1_20160829_R_TS.nc"/APPEND/Z=250/T="29-Aug-2016 23:00:00":"08-Aug-2017 17:00:00" PSAL, PSAL_QC, TEMP, TEMP_QC, TIME_QC, POSITION_QC, DEPTH_QC USE "http://dods.mbari.org/opendap/data/ssdsdata/deployments/m1/201608/m1_ctd0300_20160829_original.nc" SAVE/FILE="/mbari/ssdsdata/deployments/m1/201608/OS_MBARI-M1_20160829_R_TS.nc"/APPEND/Z=300/T="29-Aug-2016 23:00:00":"08-Aug-2017 17:00:00" PSAL, PSAL_QC, TEMP, TEMP_QC, TIME_QC, POSITION_QC, DEPTH_QC constructFerretJNL(): @uniqDepths extracted from input files = 1 10 20 40 50 60 80 100 150 200 225 250 300 constructFerretJNL(): These are not the same as the standard depths that we require for aggregation. constructFerretJNL(): Using standard depths: 1 10 20 40 60 80 100 150 200 250 300 constructFerretJNL(): jnlFile = /mbari/ssdsdata/deployments/m1/201608/OS_MBARI-M1_20160829_R_TS.jnl Calling genNcFile("/mbari/ssdsdata/deployments/m1/201608/OS_MBARI-M1_20160829_R_TS") Executing Ferret script /mbari/ssdsdata/deployments/m1/201608/OS_MBARI-M1_20160829_R_TS.jnl. If no errors from Ferret produced file: /mbari/ssdsdata/deployments/m1/201608/OS_MBARI-M1_20160829_R_TS.nc. Submitting processing metadata to SSDS combineTS.pl: Doing plots and submitting ProcessRun to SSDS with libraryName = /home/cvs/DPforSSDS/cimt/combineTS.pl submitDStoNetCDFProcessRun(): Software version that created netCDF file: http://moonjelly.shore.mbari.org/cgi-bin/cvsweb.cgi/DPforSSDS/cimt/combineTS.pl?rev=1.70 combineTS.pl: Copying /mbari/ssdsdata/deployments/m1/201608/OS_MBARI-M1_20160829_R_TS.nc to ftp://ftp.mbari.org/pub/OceanSITES combineTS.pl: FTPing /mbari/ssdsdata/deployments/m1/201608/OS_MBARI-M1_20160829_R_TS.nc to OS_MBARI-M1_20160829_R_TS.nc on ftp://comms.ndbc.noaa.gov combineTS.pl: finished: Wed Jul 18 11:47:51 2018