#! /mbari/local/bin/tcsh
# process - C Shell script to remove processed OASIS data 
#		and reprocess it all

# Copyright (C) 2001 MBARI
# Author: Kent Headley
# MBARI provides this documentation and code "as is", with no warranty,
# express or implied, of its quality or consistency. It is provided without
# support and without obligation on the part of the Monterey Bay Aquarium
# Research Institute to assist in its use, correction, modification, or
# enhancement. This information should not be published or distributed to
# third parties without specific written permission from MBARI.
#

set oasis = /oasis
set cfg = $oasis/cfg
set headers = $oasis/cfg/headers
set bin = $oasis/bin
set tmp = $oasis/tmp
set TRUE = 1
set FALSE = 0
set doM1 = $FALSE
set doM2 = $FALSE
set doM46044 = $FALSE
set doOA1 = $FALSE
set doOA2 = $FALSE
set nonomatch

@ i = 1

echo "process checking arguments."
while ($i <= $#argv )

  if ( ($argv[$i] == "m1") || ($argv[$i] == "M1") ) then
    set doM1 = $TRUE
    echo "will do m1"
  endif

  if ( ($argv[$i] == "m2") || ($argv[$i] == "M2") ) then
    set doM2 = $TRUE
    echo "will do m2"
  endif

  if ( ($argv[$i] == "m46044") || ($argv[$i] == "M46044") ) then
    set doM46044 = $TRUE
    echo "will do m46044"
  endif


  if ( ($argv[$i] == "oa1") || ($argv[$i] == "OA1") ) then
    set doOA1 = $TRUE
    echo "will do oa1"
  endif

  if ( ($argv[$i] == "oa2") || ($argv[$i] == "OA2") ) then
    set doOA2 = $TRUE
    echo "will do oa2"
  endif


  @ i++
end 

if ($doM1 == $TRUE) then
echo "do m1..."
set mooring = m1
cd $oasis/$mooring
foreach name (aanderaaO2 adcp emeter error fluor gps gpsclock hrh hs2 hyperOCR imhs2 isus lwr swr metsys microcat microcat2 microcat3 oasis o3gf pco2 tstring impod02 impod03 impod04 impod05 impod06 impod07 impod08 impod09 impod11 )
	rm -f data/$name $tmp/$name.tmp
	cp $headers/$mooring/$name.hdr data/$name
	foreach year ( 2012 2013 2014 )
	    foreach file ($name/$year*)
		awk -f $bin/concat.awk -v year=$year $file >> $tmp/$name.tmp
	    end
	    sort $tmp/$name.tmp | uniq >> data/$name
	    rm -f $tmp/$name.tmp
	end
end
echo "done m1..."
endif

if ($doM2 == $TRUE) then
echo "do m2..."
set mooring = m2
cd $oasis/$mooring

foreach name (aanderaaO2 adcp emeter error fluor o3gf gps hs2 hyperOCR isus lwr swr metsys microcat microcat2 microcat3 oasis pco2 tstring gpsclock imhs2 impod02 impod03 impod04 impod05 impod06 impod07 impod 08 impod09 impod11 )
	rm -f data/$name $tmp/$name.tmp
	cp $headers/$mooring/$name.hdr data/$name
	foreach year ( 2010 2011 )
	    foreach file ($name/$year*)
		awk -f $bin/concat.awk -v year=$year $file >> $tmp/$name.tmp
	    end
	    sort $tmp/$name.tmp | uniq >> data/$name
	    rm -f $tmp/$name.tmp
	end
end
endif



if ($doM46044 == $TRUE) then
echo "do m46044..."
set mooring = m46044
cd $oasis/$mooring

foreach name (aanderaaO2 emeter error fluor gps hs2 isus oasis o3gf pco2 gpsclock )
	rm -f data/$name $tmp/$name.tmp
	cp $headers/$mooring/$name.hdr data/$name
	foreach year ( 2011 2012 )
	    foreach file ($name/$year*)
		awk -f $bin/concat.awk -v year=$year $file >> $tmp/$name.tmp
	    end
	    sort $tmp/$name.tmp | uniq >> data/$name
	    rm -f $tmp/$name.tmp
	end
end

endif



if ($doOA1 == $TRUE) then
echo "do oa1..."
set mooring = oa1
cd $oasis/$mooring

foreach name (aanderaaO2 adcp error extAnalog1 extAnalog2 microcat pb200 pco2 )
	rm -f data/$name $tmp/$name.tmp
	cp $headers/$mooring/$name.hdr data/$name
	foreach year ( 2011 2012 )
	    foreach file ($name/$year*)
		awk -f $bin/concat.awk -v year=$year $file >> $tmp/$name.tmp
	    end
	    sort $tmp/$name.tmp | uniq >> data/$name
	    rm -f $tmp/$name.tmp
	end
end
echo "done oa2..."

endif

if ($doOA2 == $TRUE) then
echo "do oa2..."
set mooring = oa2
cd $oasis/$mooring

foreach name (aanderaaO2 adcp error extAnalog1 extAnalog2 microcat pb200 pco2 )
	rm -f data/$name $tmp/$name.tmp
	cp $headers/$mooring/$name.hdr data/$name
	foreach year ( 2011 2012 )
	    foreach file ($name/$year*)
		awk -f $bin/concat.awk -v year=$year $file >> $tmp/$name.tmp
	    end
	    sort $tmp/$name.tmp | uniq >> data/$name
	    rm -f $tmp/$name.tmp
	end
end
echo "done oa2..."

endif