#! /bin/csh
# process - C Shell script to remove processed OASIS data 
#		and reprocess it all
#

set oasis = /oasis
set cfg = $oasis/cfg
set bin = $oasis/bin
set tmp = /oasis/tmp
set TRUE = 1
set FALSE = 0
set doM1 = $FALSE
set doM2 = $FALSE
set nonomatch

@ i = 1

while ($i <= $#argv )

  if ( ($argv[$i] == "m1") || ($argv[$i] == "M1") ) then
    set doM1 = $TRUE
  endif

  if ( ($argv[$i] == "m2") || ($argv[$i] == "M2") ) then
    set doM2 = $TRUE
  endif
  @ i++
end 


if ($doM1 == $TRUE) then
set mooring = m1
cd $oasis/$mooring

foreach name (adcp ctd fluor gf gps metsys oasis pco2 shutter0 specprr specprr.volts tstring isus abeta cbeta hs2 hr1 hr2 hr3 hr4)
	rm -f data/$name $tmp/$name.tmp
	cp $cfg/$mooring/$name.hdr data/$name
	foreach year (2000 2001)
	    foreach file ($name/$year*)
		awk -f $bin/concat.awk -v year=$year $file >> $tmp/$name.tmp
	    end
	    sort $tmp/$name.tmp >> data/$name
	    rm -f $tmp/$name.tmp
	end
end
  cd $oasis/$mooring/data
  awk -f $bin/ctdmean.awk ctd > ctd.mean
endif

# Take everything but the comments and append it to the header
#foreach name (nitrate)
	#rm -f data/$name
	#cp $cfg/$mooring/$name.hdr data/$name
	#foreach file ($name/2000* $name/2001*)
		#grep -v \# $file >> data/$name
	#end
#end

if ($doM2 == $TRUE) then
set mooring = m2
cd $oasis/$mooring

foreach name ( fluor gf gps hs2 metsys oasis shutter0 specprr specprr.volts pco2 adcp ctd tstring isus)
	rm -f data/$name $tmp/$name.tmp
	cp $cfg/$mooring/$name.hdr data/$name
	foreach year (2000 2001)
	    foreach file ($name/$year*)
		awk -f $bin/concat.awk -v year=$year $file >> $tmp/$name.tmp
	    end
	    sort $tmp/$name.tmp >> data/$name
	    rm -f $tmp/$name.tmp
	end
end
  cd $oasis/$mooring/data
  awk -f $bin/ctdmean.awk ctd > ctd.mean

endif

#foreach mooring (m1 m2)
#	cd $oasis/$mooring/data
#	awk -f $bin/ctdmean.awk ctd > ctd.mean
#end