INFO 2020-07-30 07:22:15,692Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 Reading /mbari/LRAUV/tethys/missionlogs/2014/20140930_20141010/20141007T175654/201410071757_201410071918.nc4 file...
INFO 2020-07-30 07:22:15,693Z lrauvNc4ToNetcdf.py processResampleNc4File():1006 After copying to /tmp/201410071757_201410071918.nc4
INFO 2020-07-30 07:22:16,554Z lrauvNc4ToNetcdf.py processResampleNc4File():1008 Read file /mbari/LRAUV/tethys/missionlogs/2014/20140930_20141010/20141007T175654/201410071757_201410071918.nc4
INFO 2020-07-30 07:22:16,620Z lrauvNc4ToNetcdf.py createSeries():240 depth    :   63 v_t values found before 2014-10-07 17:57:00 and after 2014-10-07 19:18:00
INFO 2020-07-30 07:22:16,778Z lrauvNc4ToNetcdf.py createSeries():240 time     :   63 v_t values found before 2014-10-07 17:57:00 and after 2014-10-07 19:18:00
INFO 2020-07-30 07:22:16,984Z lrauvNc4ToNetcdf.py createSeries():240 depth    :   63 v_t values found before 2014-10-07 17:57:00 and after 2014-10-07 19:18:00
INFO 2020-07-30 07:22:17,140Z lrauvNc4ToNetcdf.py createSeries():240 time     :   63 v_t values found before 2014-10-07 17:57:00 and after 2014-10-07 19:18:00
INFO 2020-07-30 07:22:17,344Z lrauvNc4ToNetcdf.py createSeries():240 depth    :   63 v_t values found before 2014-10-07 17:57:00 and after 2014-10-07 19:18:00
INFO 2020-07-30 07:22:17,501Z lrauvNc4ToNetcdf.py createSeries():240 time     :   63 v_t values found before 2014-10-07 17:57:00 and after 2014-10-07 19:18:00
INFO 2020-07-30 07:22:17,706Z lrauvNc4ToNetcdf.py createSeries():240 depth    :   63 v_t values found before 2014-10-07 17:57:00 and after 2014-10-07 19:18:00
INFO 2020-07-30 07:22:17,861Z lrauvNc4ToNetcdf.py createSeries():240 time     :   63 v_t values found before 2014-10-07 17:57:00 and after 2014-10-07 19:18:00
WARNING 2020-07-30 07:22:18,006Z lrauvNc4ToNetcdf.py processResampleNc4File():1017 Dropping from depth repeated/decreasing values at indices: [167 168 169 170 171 172 173 174 175 176 177 178 179 180 181]
WARNING 2020-07-30 07:22:18,009Z lrauvNc4ToNetcdf.py processResampleNc4File():1017 Dropping from time repeated/decreasing values at indices: [165 166 167 168 169 170 171 172 173 174 175 176 177 178 179]
INFO 2020-07-30 07:22:18,010Z lrauvNc4ToNetcdf.py processResampleNc4File():1021 Creating t variable of the time indexes
INFO 2020-07-30 07:22:18,021Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2020-07-30 07:22:18,027Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2020-07-30 07:22:18,030Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Variable sea_water_salinity empty so skipping
INFO 2020-07-30 07:22:18,032Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Variable sea_water_temperature empty so skipping
INFO 2020-07-30 07:22:18,039Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2020-07-30 07:22:18,046Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2020-07-30 07:22:18,052Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2020-07-30 07:22:18,058Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2020-07-30 07:22:18,065Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2020-07-30 07:22:18,071Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2020-07-30 07:22:18,077Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2020-07-30 07:22:18,083Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-07-30 07:22:18,089Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2020-07-30 07:22:18,095Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2020-07-30 07:22:18,101Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group Onboard parameter platform_average_current renaming to health_platform_average_current
INFO 2020-07-30 07:22:18,103Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2020-07-30 07:22:18,108Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2020-07-30 07:22:18,114Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2020-07-30 07:22:18,119Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2020-07-30 07:22:18,136Z lrauvNc4ToNetcdf.py createSeries():240 platform_pitch_angle:   65 v_t values found before 2014-10-07 17:57:00 and after 2014-10-07 19:18:00
INFO 2020-07-30 07:22:18,306Z lrauvNc4ToNetcdf.py createNav():505 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-07-30 07:22:18,321Z lrauvNc4ToNetcdf.py createSeries():240 platform_roll_angle:   65 v_t values found before 2014-10-07 17:57:00 and after 2014-10-07 19:18:00
INFO 2020-07-30 07:22:18,489Z lrauvNc4ToNetcdf.py createNav():505 platform_roll_angle -> roll: {'units': 'arcdeg', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-07-30 07:22:18,505Z lrauvNc4ToNetcdf.py createSeries():240 platform_orientation:   65 v_t values found before 2014-10-07 17:57:00 and after 2014-10-07 19:18:00
INFO 2020-07-30 07:22:18,671Z lrauvNc4ToNetcdf.py createNav():505 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-07-30 07:22:18,672Z lrauvNc4ToNetcdf.py nudge_coords():625 /mbari/LRAUV/tethys/missionlogs/2014/20140930_20141010/20141007T175654/201410071757_201410071918.nc4
INFO 2020-07-30 07:22:18,798Z lrauvNc4ToNetcdf.py nudge_coords():643 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2020-07-30 07:22:18,800Z lrauvNc4ToNetcdf.py nudge_coords():660                  -            -            -         2      0.05              -              -                             -
WARNING 2020-07-30 07:22:18,801Z lrauvNc4ToNetcdf.py nudge_coords():674 end_sec_diff (64.939100027) > max_sec_diff_at_end (10)
INFO 2020-07-30 07:22:18,802Z lrauvNc4ToNetcdf.py nudge_coords():686    1:       64.939    0.0000315   -0.0000813         1      0.00           -inf           -inf 2014-10-07 17:58:09.036864042
INFO 2020-07-30 07:22:18,809Z lrauvNc4ToNetcdf.py nudge_coords():716    2:            -            -            -         1      0.00              -              -
INFO 2020-07-30 07:22:18,809Z lrauvNc4ToNetcdf.py nudge_coords():720 Points in final series = 4
INFO 2020-07-30 07:22:18,824Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():549 http://odss.mbari.org/trackingdb/position/tethys_ac/between/20141007T165705/20141007T201831/data.csv
INFO 2020-07-30 07:22:18,865Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():572 Found 0 position values from the Tracking database
INFO 2020-07-30 07:22:18,867Z lrauvNc4ToNetcdf.py processResampleNc4File():1152 ['oxygen', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chlorophyll', 'bbp470', 'bbp650', 'health_platform_average_current', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2020-07-30 07:22:19,248Z lrauvNc4ToNetcdf.py processResampleNc4File():1155 Wrote /mbari/LRAUV/tethys/missionlogs/2014/20140930_20141010/20141007T175654/201410071757_201410071918_2S_scieng.nc