INFO 2020-05-30 18:02:00,111Z lrauvNc4ToNetcdf.py processResampleNc4File():994 Reading /mbari/LRAUV/tethys/missionlogs/2013/20130910_20130914/20130910T183816/201309101838_201309101920.nc4 file... INFO 2020-05-30 18:02:00,111Z lrauvNc4ToNetcdf.py processResampleNc4File():995 After copying to /tmp/201309101838_201309101920.nc4 INFO 2020-05-30 18:02:00,975Z lrauvNc4ToNetcdf.py processResampleNc4File():997 Read file /mbari/LRAUV/tethys/missionlogs/2013/20130910_20130914/20130910T183816/201309101838_201309101920.nc4 INFO 2020-05-30 18:02:01,128Z lrauvNc4ToNetcdf.py createSeries():240 depth: v_t values found before 2013-09-10 18:38:00 and after 2013-09-10 19:20:00: [3199] INFO 2020-05-30 18:02:01,132Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Tue Sep 10 19:20:00 2013'] INFO 2020-05-30 18:02:01,135Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3788408e+09] for variable depth INFO 2020-05-30 18:02:01,188Z lrauvNc4ToNetcdf.py createSeries():240 time: v_t values found before 2013-09-10 18:38:00 and after 2013-09-10 19:20:00: [3197] INFO 2020-05-30 18:02:01,191Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Tue Sep 10 19:20:00 2013'] INFO 2020-05-30 18:02:01,195Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3788408e+09] for variable time INFO 2020-05-30 18:02:01,385Z lrauvNc4ToNetcdf.py createSeries():240 depth: v_t values found before 2013-09-10 18:38:00 and after 2013-09-10 19:20:00: [3199] INFO 2020-05-30 18:02:01,389Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Tue Sep 10 19:20:00 2013'] INFO 2020-05-30 18:02:01,392Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3788408e+09] for variable depth INFO 2020-05-30 18:02:01,444Z lrauvNc4ToNetcdf.py createSeries():240 time: v_t values found before 2013-09-10 18:38:00 and after 2013-09-10 19:20:00: [3197] INFO 2020-05-30 18:02:01,447Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Tue Sep 10 19:20:00 2013'] INFO 2020-05-30 18:02:01,451Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3788408e+09] for variable time INFO 2020-05-30 18:02:01,644Z lrauvNc4ToNetcdf.py createSeries():240 depth: v_t values found before 2013-09-10 18:38:00 and after 2013-09-10 19:20:00: [3199] INFO 2020-05-30 18:02:01,647Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Tue Sep 10 19:20:00 2013'] INFO 2020-05-30 18:02:01,651Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3788408e+09] for variable depth INFO 2020-05-30 18:02:01,702Z lrauvNc4ToNetcdf.py createSeries():240 time: v_t values found before 2013-09-10 18:38:00 and after 2013-09-10 19:20:00: [3197] INFO 2020-05-30 18:02:01,705Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Tue Sep 10 19:20:00 2013'] INFO 2020-05-30 18:02:01,709Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3788408e+09] for variable time INFO 2020-05-30 18:02:01,900Z lrauvNc4ToNetcdf.py createSeries():240 depth: v_t values found before 2013-09-10 18:38:00 and after 2013-09-10 19:20:00: [3199] INFO 2020-05-30 18:02:01,904Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Tue Sep 10 19:20:00 2013'] INFO 2020-05-30 18:02:01,907Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3788408e+09] for variable depth INFO 2020-05-30 18:02:01,958Z lrauvNc4ToNetcdf.py createSeries():240 time: v_t values found before 2013-09-10 18:38:00 and after 2013-09-10 19:20:00: [3197] INFO 2020-05-30 18:02:01,961Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Tue Sep 10 19:20:00 2013'] INFO 2020-05-30 18:02:01,965Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3788408e+09] for variable time WARNING 2020-05-30 18:02:02,010Z lrauvNc4ToNetcdf.py processResampleNc4File():1006 Dropping from latitude repeated/decreasing values at indices: [ 181 2068 2069 2098 2113 2114 2128 2129 2173 2174 2694] WARNING 2020-05-30 18:02:02,012Z lrauvNc4ToNetcdf.py processResampleNc4File():1006 Dropping from longitude repeated/decreasing values at indices: [ 181 2068 2069 2098 2113 2114 2128 2129 2173 2174 2694] WARNING 2020-05-30 18:02:02,014Z lrauvNc4ToNetcdf.py processResampleNc4File():1006 Dropping from depth repeated/decreasing values at indices: [ 110 111 112 113 114 292 2179 2180 2209 2210 2224 2225 2239 2240 2284 2285 2345 2346 2347 2348 2349 2350 2351 2352 2353 2354 2355 2356 2805] WARNING 2020-05-30 18:02:02,016Z lrauvNc4ToNetcdf.py processResampleNc4File():1006 Dropping from time repeated/decreasing values at indices: [ 108 109 110 111 112 290 2177 2178 2207 2208 2222 2223 2237 2238 2282 2283 2343 2344 2345 2346 2347 2348 2349 2350 2351 2352 2353 2354 2803] INFO 2020-05-30 18:02:02,017Z lrauvNc4ToNetcdf.py processResampleNc4File():1010 Creating t variable of the time indexes INFO 2020-05-30 18:02:02,027Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2020-05-30 18:02:02,033Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2020-05-30 18:02:02,039Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude INFO 2020-05-30 18:02:02,046Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle INFO 2020-05-30 18:02:02,054Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2020-05-30 18:02:02,059Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate INFO 2020-05-30 18:02:02,067Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2020-05-30 18:02:02,072Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2020-05-30 18:02:02,078Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 Found in group Onboard parameter platform_average_current renaming to health_platform_average_current INFO 2020-05-30 18:02:02,086Z lrauvNc4ToNetcdf.py createSeries():240 platform_pitch_angle: v_t values found before 2013-09-10 18:38:00 and after 2013-09-10 19:20:00: [3199] INFO 2020-05-30 18:02:02,090Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Tue Sep 10 19:20:00 2013'] INFO 2020-05-30 18:02:02,093Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3788408e+09] for variable platform_pitch_angle DEBUG 2020-05-30 18:02:02,138Z lrauvNc4ToNetcdf.py createNav():492 calling ts.resample() for pitch DEBUG 2020-05-30 18:02:02,142Z lrauvNc4ToNetcdf.py createNav():494 calling self.interpolate() for pitch INFO 2020-05-30 18:02:02,143Z lrauvNc4ToNetcdf.py createNav():504 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} INFO 2020-05-30 18:02:02,150Z lrauvNc4ToNetcdf.py createSeries():240 platform_roll_angle: v_t values found before 2013-09-10 18:38:00 and after 2013-09-10 19:20:00: [3199] INFO 2020-05-30 18:02:02,154Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Tue Sep 10 19:20:00 2013'] INFO 2020-05-30 18:02:02,157Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3788408e+09] for variable platform_roll_angle DEBUG 2020-05-30 18:02:02,201Z lrauvNc4ToNetcdf.py createNav():492 calling ts.resample() for roll DEBUG 2020-05-30 18:02:02,205Z lrauvNc4ToNetcdf.py createNav():494 calling self.interpolate() for roll INFO 2020-05-30 18:02:02,206Z lrauvNc4ToNetcdf.py createNav():504 platform_roll_angle -> roll: {'units': 'n/a', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} INFO 2020-05-30 18:02:02,213Z lrauvNc4ToNetcdf.py createSeries():240 platform_orientation: v_t values found before 2013-09-10 18:38:00 and after 2013-09-10 19:20:00: [3199] INFO 2020-05-30 18:02:02,217Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Tue Sep 10 19:20:00 2013'] INFO 2020-05-30 18:02:02,220Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3788408e+09] for variable platform_orientation DEBUG 2020-05-30 18:02:02,264Z lrauvNc4ToNetcdf.py createNav():492 calling ts.resample() for yaw DEBUG 2020-05-30 18:02:02,268Z lrauvNc4ToNetcdf.py createNav():494 calling self.interpolate() for yaw INFO 2020-05-30 18:02:02,269Z lrauvNc4ToNetcdf.py createNav():504 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2020-05-30 18:02:02,269Z lrauvNc4ToNetcdf.py nudge_coords():624 /mbari/LRAUV/tethys/missionlogs/2013/20130910_20130914/20130910T183816/201309101838_201309101920.nc4 DEBUG 2020-05-30 18:02:02,323Z lrauvNc4ToNetcdf.py var_series():612 longitude: rad_to_deg = True DEBUG 2020-05-30 18:02:02,376Z lrauvNc4ToNetcdf.py var_series():612 latitude: rad_to_deg = True DEBUG 2020-05-30 18:02:02,394Z lrauvNc4ToNetcdf.py var_series():612 longitude_fix: rad_to_deg = True DEBUG 2020-05-30 18:02:02,412Z lrauvNc4ToNetcdf.py var_series():612 latitude_fix: rad_to_deg = True INFO 2020-05-30 18:02:02,413Z lrauvNc4ToNetcdf.py nudge_coords():642 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2020-05-30 18:02:02,414Z lrauvNc4ToNetcdf.py nudge_coords():658 - - - 6 0.03 - - - INFO 2020-05-30 18:02:02,416Z lrauvNc4ToNetcdf.py nudge_coords():680 0: 0.322 0.0000000 0.0000000 178 1.18 0.00 0.00 2013-09-10 18:40:25.436463118 INFO 2020-05-30 18:02:02,421Z lrauvNc4ToNetcdf.py nudge_coords():680 1: 0.386 0.0000287 -0.0000020 185 1.46 -0.16 -0.25 2013-09-10 18:41:53.453111887 INFO 2020-05-30 18:02:02,426Z lrauvNc4ToNetcdf.py nudge_coords():680 2: 0.383 0.0001800 -0.0004813 1301 14.25 -3.90 -6.26 2013-09-10 18:56:09.199517965 INFO 2020-05-30 18:02:02,431Z lrauvNc4ToNetcdf.py nudge_coords():680 3: 0.373 -0.0000323 -0.0000257 370 6.84 -0.43 -0.70 2013-09-10 19:03:00.508896111 INFO 2020-05-30 18:02:02,436Z lrauvNc4ToNetcdf.py nudge_coords():680 4: 0.378 -0.0000060 -0.0000052 7 0.04 -14.55 -23.31 2013-09-10 19:03:03.480485916 INFO 2020-05-30 18:02:02,441Z lrauvNc4ToNetcdf.py nudge_coords():680 5: 0.192 0.0000000 0.0000000 9 0.05 0.00 0.00 2013-09-10 19:03:07.014336109 INFO 2020-05-30 18:02:02,446Z lrauvNc4ToNetcdf.py nudge_coords():680 6: 0.378 -0.0000095 -0.0000107 6 0.03 -37.12 -59.50 2013-09-10 19:03:09.416116953 INFO 2020-05-30 18:02:02,451Z lrauvNc4ToNetcdf.py nudge_coords():680 7: 0.006 0.0000000 0.0000000 10 0.05 0.00 0.00 2013-09-10 19:03:12.802360058 INFO 2020-05-30 18:02:02,455Z lrauvNc4ToNetcdf.py nudge_coords():680 8: 0.374 0.0000003 -0.0000042 5 0.03 -18.07 -28.96 2013-09-10 19:03:14.812743902 INFO 2020-05-30 18:02:02,460Z lrauvNc4ToNetcdf.py nudge_coords():680 9: 0.194 0.0000000 0.0000000 9 0.05 0.00 0.00 2013-09-10 19:03:19.013312101 INFO 2020-05-30 18:02:02,465Z lrauvNc4ToNetcdf.py nudge_coords():680 10: 0.379 0.0000062 -0.0000037 6 0.03 -12.77 -20.46 2013-09-10 19:03:21.413044930 INFO 2020-05-30 18:02:02,470Z lrauvNc4ToNetcdf.py nudge_coords():680 11: 0.390 0.0000000 0.0000000 9 0.04 0.00 0.00 2013-09-10 19:03:24.420178890 INFO 2020-05-30 18:02:02,475Z lrauvNc4ToNetcdf.py nudge_coords():680 12: 0.377 0.0000033 -0.0000023 6 0.03 -8.09 -12.97 2013-09-10 19:03:26.812743902 INFO 2020-05-30 18:02:02,479Z lrauvNc4ToNetcdf.py nudge_coords():680 13: 0.005 0.0000000 0.0000000 10 0.05 0.00 0.00 2013-09-10 19:03:30.803384066 INFO 2020-05-30 18:02:02,484Z lrauvNc4ToNetcdf.py nudge_coords():680 14: 0.374 0.0000027 0.0000005 5 0.03 2.18 3.50 2013-09-10 19:03:32.812743902 INFO 2020-05-30 18:02:02,489Z lrauvNc4ToNetcdf.py nudge_coords():680 15: 0.382 0.0000000 0.0000000 9 0.04 0.00 0.00 2013-09-10 19:03:36.423250914 INFO 2020-05-30 18:02:02,494Z lrauvNc4ToNetcdf.py nudge_coords():680 16: 0.377 0.0000027 -0.0000003 6 0.03 -1.15 -1.85 2013-09-10 19:03:38.810096025 INFO 2020-05-30 18:02:02,499Z lrauvNc4ToNetcdf.py nudge_coords():680 17: 0.177 0.0000000 0.0000000 9 0.05 0.00 0.00 2013-09-10 19:03:43.016383886 INFO 2020-05-30 18:02:02,503Z lrauvNc4ToNetcdf.py nudge_coords():680 18: 0.368 0.0000167 0.0000000 6 0.03 0.00 0.00 2013-09-10 19:03:45.434549093 INFO 2020-05-30 18:02:02,508Z lrauvNc4ToNetcdf.py nudge_coords():680 19: 0.188 0.0000000 0.0000000 9 0.05 0.00 0.00 2013-09-10 19:03:49.013312101 INFO 2020-05-30 18:02:02,513Z lrauvNc4ToNetcdf.py nudge_coords():680 20: 0.366 0.0000130 -0.0000020 6 0.03 -6.90 -11.06 2013-09-10 19:03:51.426266909 INFO 2020-05-30 18:02:02,518Z lrauvNc4ToNetcdf.py nudge_coords():680 21: 0.010 0.0000000 0.0000000 10 0.05 0.00 0.00 2013-09-10 19:03:54.805341959 INFO 2020-05-30 18:02:02,523Z lrauvNc4ToNetcdf.py nudge_coords():680 22: 0.374 0.0000215 -0.0000318 5 0.03 -140.10 -224.56 2013-09-10 19:03:56.809672117 INFO 2020-05-30 18:02:02,528Z lrauvNc4ToNetcdf.py nudge_coords():680 23: 0.178 0.0000000 0.0000000 9 0.05 0.00 0.00 2013-09-10 19:04:01.015360117 INFO 2020-05-30 18:02:02,532Z lrauvNc4ToNetcdf.py nudge_coords():680 24: 0.378 0.0000253 -0.0000087 6 0.03 -30.08 -48.21 2013-09-10 19:04:03.422785044 INFO 2020-05-30 18:02:02,537Z lrauvNc4ToNetcdf.py nudge_coords():680 25: 0.174 0.0000000 0.0000000 9 0.05 0.00 0.00 2013-09-10 19:04:07.015360117 INFO 2020-05-30 18:02:02,542Z lrauvNc4ToNetcdf.py nudge_coords():680 26: 0.377 0.0000032 0.0000015 6 0.03 5.22 8.36 2013-09-10 19:04:09.424218893 INFO 2020-05-30 18:02:02,547Z lrauvNc4ToNetcdf.py nudge_coords():680 27: 0.177 0.0000000 0.0000000 9 0.05 0.00 0.00 2013-09-10 19:04:13.016383886 INFO 2020-05-30 18:02:02,552Z lrauvNc4ToNetcdf.py nudge_coords():680 28: 0.374 0.0000173 -0.0000032 6 0.03 -10.97 -17.58 2013-09-10 19:04:15.427381039 INFO 2020-05-30 18:02:02,556Z lrauvNc4ToNetcdf.py nudge_coords():680 29: 0.057 0.0000000 0.0000000 21 0.13 0.00 0.00 2013-09-10 19:04:23.800246954 INFO 2020-05-30 18:02:02,561Z lrauvNc4ToNetcdf.py nudge_coords():680 30: 0.366 0.0000033 0.0000142 118 0.91 1.80 2.88 2013-09-10 19:05:18.914340973 INFO 2020-05-30 18:02:02,566Z lrauvNc4ToNetcdf.py nudge_coords():680 31: 0.058 0.0000000 0.0000000 331 7.07 0.00 0.00 2013-09-10 19:12:28.428271055 INFO 2020-05-30 18:02:02,571Z lrauvNc4ToNetcdf.py nudge_coords():710 33: - - - 392 7.52 - - INFO 2020-05-30 18:02:02,571Z lrauvNc4ToNetcdf.py nudge_coords():714 Points in final series = 3089 DEBUG 2020-05-30 18:02:02,572Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():540 Constructing trackingdb url to 3600 seconds beyond time range of file INFO 2020-05-30 18:02:02,579Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():548 http://odss.mbari.org/trackingdb/position/tethys_ac/between/20130910T173828/20130910T202002/data.csv INFO 2020-05-30 18:02:02,613Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():571 Found 0 position values from the Tracking database INFO 2020-05-30 18:02:02,616Z lrauvNc4ToNetcdf.py processResampleNc4File():1143 ['fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_elevator_angle', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'control_inputs_mass_position', 'control_inputs_buoyancy_position', 'health_platform_average_current', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] DEBUG 2020-05-30 18:02:02,617Z lrauvNc4ToNetcdf.py write_netcdf():130 Creating netCDF file /mbari/LRAUV/tethys/missionlogs/2013/20130910_20130914/20130910T183816/201309101838_201309101920_2S_eng.nc DEBUG 2020-05-30 18:02:02,732Z lrauvNc4ToNetcdf.py write_netcdf():155 Adding in record variable fix_time DEBUG 2020-05-30 18:02:02,743Z lrauvNc4ToNetcdf.py write_netcdf():155 Adding in record variable time DEBUG 2020-05-30 18:02:02,747Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable fix_latitude DEBUG 2020-05-30 18:02:02,752Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable fix_longitude DEBUG 2020-05-30 18:02:02,756Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable control_inputs_elevator_angle DEBUG 2020-05-30 18:02:02,759Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable control_inputs_rudder_angle DEBUG 2020-05-30 18:02:02,763Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable control_inputs_propeller_rotation_rate DEBUG 2020-05-30 18:02:02,768Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable control_inputs_mass_position DEBUG 2020-05-30 18:02:02,771Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable control_inputs_buoyancy_position DEBUG 2020-05-30 18:02:02,780Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable health_platform_average_current DEBUG 2020-05-30 18:02:02,784Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable pitch DEBUG 2020-05-30 18:02:02,788Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable roll DEBUG 2020-05-30 18:02:02,792Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable yaw DEBUG 2020-05-30 18:02:02,796Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable latitude DEBUG 2020-05-30 18:02:02,806Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable longitude DEBUG 2020-05-30 18:02:02,810Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable depth DEBUG 2020-05-30 18:02:02,814Z lrauvNc4ToNetcdf.py write_netcdf():174 Adding in global metadata INFO 2020-05-30 18:02:02,952Z lrauvNc4ToNetcdf.py processResampleNc4File():1146 Wrote /mbari/LRAUV/tethys/missionlogs/2013/20130910_20130914/20130910T183816/201309101838_201309101920_2S_eng.nc