INFO 2020-05-30 17:04:16,519Z lrauvNc4ToNetcdf.py processResampleNc4File():994 Reading /mbari/LRAUV/tethys/missionlogs/2013/20130910_20130914/20130910T183816/201309101838_201309101920.nc4 file... INFO 2020-05-30 17:04:16,520Z lrauvNc4ToNetcdf.py processResampleNc4File():995 After copying to /tmp/201309101838_201309101920.nc4 INFO 2020-05-30 17:04:17,024Z lrauvNc4ToNetcdf.py processResampleNc4File():997 Read file /mbari/LRAUV/tethys/missionlogs/2013/20130910_20130914/20130910T183816/201309101838_201309101920.nc4 INFO 2020-05-30 17:04:17,181Z lrauvNc4ToNetcdf.py createSeries():240 depth: v_t values found before 2013-09-10 18:38:00 and after 2013-09-10 19:20:00: [3199] INFO 2020-05-30 17:04:17,185Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Tue Sep 10 19:20:00 2013'] INFO 2020-05-30 17:04:17,189Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3788408e+09] for variable depth INFO 2020-05-30 17:04:17,241Z lrauvNc4ToNetcdf.py createSeries():240 time: v_t values found before 2013-09-10 18:38:00 and after 2013-09-10 19:20:00: [3197] INFO 2020-05-30 17:04:17,245Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Tue Sep 10 19:20:00 2013'] INFO 2020-05-30 17:04:17,249Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3788408e+09] for variable time INFO 2020-05-30 17:04:17,449Z lrauvNc4ToNetcdf.py createSeries():240 depth: v_t values found before 2013-09-10 18:38:00 and after 2013-09-10 19:20:00: [3199] INFO 2020-05-30 17:04:17,452Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Tue Sep 10 19:20:00 2013'] INFO 2020-05-30 17:04:17,457Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3788408e+09] for variable depth INFO 2020-05-30 17:04:17,508Z lrauvNc4ToNetcdf.py createSeries():240 time: v_t values found before 2013-09-10 18:38:00 and after 2013-09-10 19:20:00: [3197] INFO 2020-05-30 17:04:17,512Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Tue Sep 10 19:20:00 2013'] INFO 2020-05-30 17:04:17,515Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3788408e+09] for variable time INFO 2020-05-30 17:04:17,716Z lrauvNc4ToNetcdf.py createSeries():240 depth: v_t values found before 2013-09-10 18:38:00 and after 2013-09-10 19:20:00: [3199] INFO 2020-05-30 17:04:17,720Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Tue Sep 10 19:20:00 2013'] INFO 2020-05-30 17:04:17,724Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3788408e+09] for variable depth INFO 2020-05-30 17:04:17,776Z lrauvNc4ToNetcdf.py createSeries():240 time: v_t values found before 2013-09-10 18:38:00 and after 2013-09-10 19:20:00: [3197] INFO 2020-05-30 17:04:17,779Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Tue Sep 10 19:20:00 2013'] INFO 2020-05-30 17:04:17,783Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3788408e+09] for variable time INFO 2020-05-30 17:04:17,980Z lrauvNc4ToNetcdf.py createSeries():240 depth: v_t values found before 2013-09-10 18:38:00 and after 2013-09-10 19:20:00: [3199] INFO 2020-05-30 17:04:17,983Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Tue Sep 10 19:20:00 2013'] INFO 2020-05-30 17:04:17,987Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3788408e+09] for variable depth INFO 2020-05-30 17:04:18,038Z lrauvNc4ToNetcdf.py createSeries():240 time: v_t values found before 2013-09-10 18:38:00 and after 2013-09-10 19:20:00: [3197] INFO 2020-05-30 17:04:18,042Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Tue Sep 10 19:20:00 2013'] INFO 2020-05-30 17:04:18,046Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3788408e+09] for variable time WARNING 2020-05-30 17:04:18,091Z lrauvNc4ToNetcdf.py processResampleNc4File():1006 Dropping from latitude repeated/decreasing values at indices: [ 181 2068 2069 2098 2113 2114 2128 2129 2173 2174 2694] WARNING 2020-05-30 17:04:18,093Z lrauvNc4ToNetcdf.py processResampleNc4File():1006 Dropping from longitude repeated/decreasing values at indices: [ 181 2068 2069 2098 2113 2114 2128 2129 2173 2174 2694] WARNING 2020-05-30 17:04:18,095Z lrauvNc4ToNetcdf.py processResampleNc4File():1006 Dropping from depth repeated/decreasing values at indices: [ 110 111 112 113 114 292 2179 2180 2209 2210 2224 2225 2239 2240 2284 2285 2345 2346 2347 2348 2349 2350 2351 2352 2353 2354 2355 2356 2805] WARNING 2020-05-30 17:04:18,096Z lrauvNc4ToNetcdf.py processResampleNc4File():1006 Dropping from time repeated/decreasing values at indices: [ 108 109 110 111 112 290 2177 2178 2207 2208 2222 2223 2237 2238 2282 2283 2343 2344 2345 2346 2347 2348 2349 2350 2351 2352 2353 2354 2803] INFO 2020-05-30 17:04:18,098Z lrauvNc4ToNetcdf.py processResampleNc4File():1010 Creating t variable of the time indexes INFO 2020-05-30 17:04:18,102Z lrauvNc4ToNetcdf.py createSeries():240 downwelling_photosynthetic_photon_flux_in_sea_water: v_t values found before 2013-09-10 18:38:00 and after 2013-09-10 19:20:00: [3197] INFO 2020-05-30 17:04:18,103Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Tue Sep 10 19:20:00 2013'] INFO 2020-05-30 17:04:18,104Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3788408e+09] for variable downwelling_photosynthetic_photon_flux_in_sea_water INFO 2020-05-30 17:04:18,147Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR INFO 2020-05-30 17:04:18,149Z lrauvNc4ToNetcdf.py processResampleNc4File():1048 Variable sea_water_salinity empty so skipping INFO 2020-05-30 17:04:18,152Z lrauvNc4ToNetcdf.py processResampleNc4File():1048 Variable sea_water_temperature empty so skipping INFO 2020-05-30 17:04:18,157Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2020-05-30 17:04:18,163Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470 INFO 2020-05-30 17:04:18,168Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650 INFO 2020-05-30 17:04:18,173Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen INFO 2020-05-30 17:04:18,179Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 Found in group ISUS parameter mole_concentration_of_nitrate_in_sea_water renaming to nitrate INFO 2020-05-30 17:04:18,179Z lrauvNc4ToNetcdf.py nudge_coords():624 /mbari/LRAUV/tethys/missionlogs/2013/20130910_20130914/20130910T183816/201309101838_201309101920.nc4 DEBUG 2020-05-30 17:04:18,234Z lrauvNc4ToNetcdf.py var_series():612 longitude: rad_to_deg = True DEBUG 2020-05-30 17:04:18,288Z lrauvNc4ToNetcdf.py var_series():612 latitude: rad_to_deg = True DEBUG 2020-05-30 17:04:18,307Z lrauvNc4ToNetcdf.py var_series():612 longitude_fix: rad_to_deg = True DEBUG 2020-05-30 17:04:18,326Z lrauvNc4ToNetcdf.py var_series():612 latitude_fix: rad_to_deg = True INFO 2020-05-30 17:04:18,326Z lrauvNc4ToNetcdf.py nudge_coords():642 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2020-05-30 17:04:18,328Z lrauvNc4ToNetcdf.py nudge_coords():658 - - - 6 0.03 - - - INFO 2020-05-30 17:04:18,330Z lrauvNc4ToNetcdf.py nudge_coords():680 0: 0.322 0.0000000 0.0000000 178 1.18 0.00 0.00 2013-09-10 18:40:25.436463118 INFO 2020-05-30 17:04:18,335Z lrauvNc4ToNetcdf.py nudge_coords():680 1: 0.386 0.0000287 -0.0000020 185 1.46 -0.16 -0.25 2013-09-10 18:41:53.453111887 INFO 2020-05-30 17:04:18,340Z lrauvNc4ToNetcdf.py nudge_coords():680 2: 0.383 0.0001800 -0.0004813 1301 14.25 -3.90 -6.26 2013-09-10 18:56:09.199517965 INFO 2020-05-30 17:04:18,345Z lrauvNc4ToNetcdf.py nudge_coords():680 3: 0.373 -0.0000323 -0.0000257 370 6.84 -0.43 -0.70 2013-09-10 19:03:00.508896111 INFO 2020-05-30 17:04:18,350Z lrauvNc4ToNetcdf.py nudge_coords():680 4: 0.378 -0.0000060 -0.0000052 7 0.04 -14.55 -23.31 2013-09-10 19:03:03.480485916 INFO 2020-05-30 17:04:18,355Z lrauvNc4ToNetcdf.py nudge_coords():680 5: 0.192 0.0000000 0.0000000 9 0.05 0.00 0.00 2013-09-10 19:03:07.014336109 INFO 2020-05-30 17:04:18,360Z lrauvNc4ToNetcdf.py nudge_coords():680 6: 0.378 -0.0000095 -0.0000107 6 0.03 -37.12 -59.50 2013-09-10 19:03:09.416116953 INFO 2020-05-30 17:04:18,365Z lrauvNc4ToNetcdf.py nudge_coords():680 7: 0.006 0.0000000 0.0000000 10 0.05 0.00 0.00 2013-09-10 19:03:12.802360058 INFO 2020-05-30 17:04:18,369Z lrauvNc4ToNetcdf.py nudge_coords():680 8: 0.374 0.0000003 -0.0000042 5 0.03 -18.07 -28.96 2013-09-10 19:03:14.812743902 INFO 2020-05-30 17:04:18,374Z lrauvNc4ToNetcdf.py nudge_coords():680 9: 0.194 0.0000000 0.0000000 9 0.05 0.00 0.00 2013-09-10 19:03:19.013312101 INFO 2020-05-30 17:04:18,379Z lrauvNc4ToNetcdf.py nudge_coords():680 10: 0.379 0.0000062 -0.0000037 6 0.03 -12.77 -20.46 2013-09-10 19:03:21.413044930 INFO 2020-05-30 17:04:18,384Z lrauvNc4ToNetcdf.py nudge_coords():680 11: 0.390 0.0000000 0.0000000 9 0.04 0.00 0.00 2013-09-10 19:03:24.420178890 INFO 2020-05-30 17:04:18,389Z lrauvNc4ToNetcdf.py nudge_coords():680 12: 0.377 0.0000033 -0.0000023 6 0.03 -8.09 -12.97 2013-09-10 19:03:26.812743902 INFO 2020-05-30 17:04:18,394Z lrauvNc4ToNetcdf.py nudge_coords():680 13: 0.005 0.0000000 0.0000000 10 0.05 0.00 0.00 2013-09-10 19:03:30.803384066 INFO 2020-05-30 17:04:18,399Z lrauvNc4ToNetcdf.py nudge_coords():680 14: 0.374 0.0000027 0.0000005 5 0.03 2.18 3.50 2013-09-10 19:03:32.812743902 INFO 2020-05-30 17:04:18,403Z lrauvNc4ToNetcdf.py nudge_coords():680 15: 0.382 0.0000000 0.0000000 9 0.04 0.00 0.00 2013-09-10 19:03:36.423250914 INFO 2020-05-30 17:04:18,408Z lrauvNc4ToNetcdf.py nudge_coords():680 16: 0.377 0.0000027 -0.0000003 6 0.03 -1.15 -1.85 2013-09-10 19:03:38.810096025 INFO 2020-05-30 17:04:18,413Z lrauvNc4ToNetcdf.py nudge_coords():680 17: 0.177 0.0000000 0.0000000 9 0.05 0.00 0.00 2013-09-10 19:03:43.016383886 INFO 2020-05-30 17:04:18,418Z lrauvNc4ToNetcdf.py nudge_coords():680 18: 0.368 0.0000167 0.0000000 6 0.03 0.00 0.00 2013-09-10 19:03:45.434549093 INFO 2020-05-30 17:04:18,423Z lrauvNc4ToNetcdf.py nudge_coords():680 19: 0.188 0.0000000 0.0000000 9 0.05 0.00 0.00 2013-09-10 19:03:49.013312101 INFO 2020-05-30 17:04:18,428Z lrauvNc4ToNetcdf.py nudge_coords():680 20: 0.366 0.0000130 -0.0000020 6 0.03 -6.90 -11.06 2013-09-10 19:03:51.426266909 INFO 2020-05-30 17:04:18,433Z lrauvNc4ToNetcdf.py nudge_coords():680 21: 0.010 0.0000000 0.0000000 10 0.05 0.00 0.00 2013-09-10 19:03:54.805341959 INFO 2020-05-30 17:04:18,437Z lrauvNc4ToNetcdf.py nudge_coords():680 22: 0.374 0.0000215 -0.0000318 5 0.03 -140.10 -224.56 2013-09-10 19:03:56.809672117 INFO 2020-05-30 17:04:18,443Z lrauvNc4ToNetcdf.py nudge_coords():680 23: 0.178 0.0000000 0.0000000 9 0.05 0.00 0.00 2013-09-10 19:04:01.015360117 INFO 2020-05-30 17:04:18,447Z lrauvNc4ToNetcdf.py nudge_coords():680 24: 0.378 0.0000253 -0.0000087 6 0.03 -30.08 -48.21 2013-09-10 19:04:03.422785044 INFO 2020-05-30 17:04:18,452Z lrauvNc4ToNetcdf.py nudge_coords():680 25: 0.174 0.0000000 0.0000000 9 0.05 0.00 0.00 2013-09-10 19:04:07.015360117 INFO 2020-05-30 17:04:18,457Z lrauvNc4ToNetcdf.py nudge_coords():680 26: 0.377 0.0000032 0.0000015 6 0.03 5.22 8.36 2013-09-10 19:04:09.424218893 INFO 2020-05-30 17:04:18,462Z lrauvNc4ToNetcdf.py nudge_coords():680 27: 0.177 0.0000000 0.0000000 9 0.05 0.00 0.00 2013-09-10 19:04:13.016383886 INFO 2020-05-30 17:04:18,467Z lrauvNc4ToNetcdf.py nudge_coords():680 28: 0.374 0.0000173 -0.0000032 6 0.03 -10.97 -17.58 2013-09-10 19:04:15.427381039 INFO 2020-05-30 17:04:18,472Z lrauvNc4ToNetcdf.py nudge_coords():680 29: 0.057 0.0000000 0.0000000 21 0.13 0.00 0.00 2013-09-10 19:04:23.800246954 INFO 2020-05-30 17:04:18,477Z lrauvNc4ToNetcdf.py nudge_coords():680 30: 0.366 0.0000033 0.0000142 118 0.91 1.80 2.88 2013-09-10 19:05:18.914340973 INFO 2020-05-30 17:04:18,481Z lrauvNc4ToNetcdf.py nudge_coords():680 31: 0.058 0.0000000 0.0000000 331 7.07 0.00 0.00 2013-09-10 19:12:28.428271055 INFO 2020-05-30 17:04:18,486Z lrauvNc4ToNetcdf.py nudge_coords():710 33: - - - 392 7.52 - - INFO 2020-05-30 17:04:18,486Z lrauvNc4ToNetcdf.py nudge_coords():714 Points in final series = 3089 DEBUG 2020-05-30 17:04:18,487Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():540 Constructing trackingdb url to 3600 seconds beyond time range of file INFO 2020-05-30 17:04:18,496Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():548 http://odss.mbari.org/trackingdb/position/tethys_ac/between/20130910T173828/20130910T202002/data.csv INFO 2020-05-30 17:04:18,531Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():571 Found 0 position values from the Tracking database INFO 2020-05-30 17:04:18,535Z lrauvNc4ToNetcdf.py processResampleNc4File():1143 ['PAR', 'chlorophyll', 'bbp470', 'bbp650', 'oxygen', 'nitrate', 'latitude', 'longitude', 'depth', 'time'] DEBUG 2020-05-30 17:04:18,536Z lrauvNc4ToNetcdf.py write_netcdf():130 Creating netCDF file /mbari/LRAUV/tethys/missionlogs/2013/20130910_20130914/20130910T183816/201309101838_201309101920_10S_sci.nc DEBUG 2020-05-30 17:04:18,596Z lrauvNc4ToNetcdf.py write_netcdf():155 Adding in record variable time DEBUG 2020-05-30 17:04:18,615Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable PAR DEBUG 2020-05-30 17:04:18,621Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable chlorophyll DEBUG 2020-05-30 17:04:18,628Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable bbp470 DEBUG 2020-05-30 17:04:18,633Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable bbp650 DEBUG 2020-05-30 17:04:18,639Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable oxygen DEBUG 2020-05-30 17:04:18,644Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable nitrate DEBUG 2020-05-30 17:04:18,650Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable latitude DEBUG 2020-05-30 17:04:18,655Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable longitude DEBUG 2020-05-30 17:04:18,665Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable depth DEBUG 2020-05-30 17:04:18,671Z lrauvNc4ToNetcdf.py write_netcdf():174 Adding in global metadata INFO 2020-05-30 17:04:18,811Z lrauvNc4ToNetcdf.py processResampleNc4File():1146 Wrote /mbari/LRAUV/tethys/missionlogs/2013/20130910_20130914/20130910T183816/201309101838_201309101920_10S_sci.nc