2020-11-25T21:14:50.872Z,1606338890.872 [Supervisor](DEBUG): Initializing supervisor.
2020-11-25T21:14:50.875Z,1606338890.875 [SyncHandler](DEBUG): Created PCaller Thread at 404514E0
2020-11-25T21:14:50.876Z,1606338890.876 [SyncHandler](INFO): Protected caller Thread ID is 2076
2020-11-25T21:14:50.876Z,1606338890.876 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2020-11-25T21:14:50.877Z,1606338890.877 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 404814E0
2020-11-25T21:14:50.877Z,1606338890.877 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 2077
2020-11-25T21:14:50.881Z,1606338890.881 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2020-11-25T21:14:50.898Z,1606338890.898 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2020-11-25T21:14:50.899Z,1606338890.899 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 404B14E0
2020-11-25T21:14:50.900Z,1606338890.900 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 2078
2020-11-25T21:14:50.900Z,1606338890.900 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2020-11-25T21:14:50.901Z,1606338890.901 [logger ThreadHandler](DEBUG): Created PCaller Thread at 404E14E0
2020-11-25T21:14:50.902Z,1606338890.902 [logger ThreadHandler](INFO): Protected caller Thread ID is 2079
2020-11-25T21:14:50.906Z,1606338890.906 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2020-11-25T21:14:50.907Z,1606338890.907 [Supervisor](INFO): Looking for Config files in directory: Config/
2020-11-25T21:14:50.908Z,1606338890.908 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2020-11-25T21:14:51.066Z,1606338891.066 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2020-11-25T21:14:51.067Z,1606338891.067 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2020-11-25T21:14:51.646Z,1606338891.646 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2020-11-25T21:14:51.647Z,1606338891.647 [Supervisor](INFO): Opening Config file at: Config/Dock.cfg
2020-11-25T21:14:51.843Z,1606338891.843 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Dock
2020-11-25T21:14:51.843Z,1606338891.843 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2020-11-25T21:14:51.939Z,1606338891.939 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2020-11-25T21:14:51.940Z,1606338891.940 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2020-11-25T21:14:52.042Z,1606338892.042 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2020-11-25T21:14:52.043Z,1606338892.043 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2020-11-25T21:14:52.122Z,1606338892.122 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2020-11-25T21:14:52.271Z,1606338892.271 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2020-11-25T21:14:52.272Z,1606338892.272 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2020-11-25T21:14:52.628Z,1606338892.628 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2020-11-25T21:14:52.628Z,1606338892.628 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2020-11-25T21:14:53.125Z,1606338893.125 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2020-11-25T21:14:53.125Z,1606338893.125 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2020-11-25T21:14:53.267Z,1606338893.267 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2020-11-25T21:14:53.267Z,1606338893.267 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2020-11-25T21:14:53.450Z,1606338893.450 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2020-11-25T21:14:53.451Z,1606338893.451 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2020-11-25T21:14:53.929Z,1606338893.929 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2020-11-25T21:14:53.930Z,1606338893.930 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2020-11-25T21:14:54.141Z,1606338894.141 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2020-11-25T21:14:54.141Z,1606338894.141 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2020-11-25T21:14:54.336Z,1606338894.336 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2020-11-25T21:14:54.337Z,1606338894.337 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2020-11-25T21:14:54.751Z,1606338894.751 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2020-11-25T21:14:54.752Z,1606338894.752 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2020-11-25T21:14:55.462Z,1606338895.462 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2020-11-25T21:14:55.464Z,1606338895.464 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-pontus/
2020-11-25T21:14:55.465Z,1606338895.465 [Supervisor](INFO): Opening Config file at: Config/lrauv-pontus/secure.cfg
2020-11-25T21:14:55.547Z,1606338895.547 [Supervisor](INFO): Opening Config file at: Config/lrauv-pontus/Sensor.cfg
2020-11-25T21:14:55.696Z,1606338895.696 [Supervisor](INFO): Opening Config file at: Config/lrauv-pontus/Servo.cfg
2020-11-25T21:14:55.801Z,1606338895.801 [Supervisor](INFO): Opening Config file at: Config/lrauv-pontus/Simulator.cfg
2020-11-25T21:14:55.884Z,1606338895.884 [Supervisor](INFO): Opening Config file at: Config/lrauv-pontus/logger.cfg
2020-11-25T21:14:55.976Z,1606338895.976 [Supervisor](INFO): Opening Config file at: Config/lrauv-pontus/vehicle.cfg
2020-11-25T21:14:56.164Z,1606338896.164 [Supervisor](INFO): Opening Config file at: Config/lrauv-pontus/Battery.cfg
2020-11-25T21:14:56.418Z,1606338896.418 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Battery
2020-11-25T21:14:56.418Z,1606338896.418 [Supervisor](INFO): Opening Config file at: Config/lrauv-pontus/Navigation.cfg
2020-11-25T21:14:56.509Z,1606338896.509 [Supervisor](INFO): Opening Config file at: Config/lrauv-pontus/BIT.cfg
2020-11-25T21:14:56.605Z,1606338896.605 [Supervisor](INFO): Opening Config file at: Config/lrauv-pontus/Science.cfg
2020-11-25T21:14:56.742Z,1606338896.742 [Supervisor](INFO): Opening Config file at: Config/lrauv-pontus/Control.cfg
2020-11-25T21:14:56.840Z,1606338896.840 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-pontus/root/
2020-11-25T21:14:56.841Z,1606338896.841 [Supervisor](IMPORTANT): Reading configuration overrides from Data/persisted.cfg
2020-11-25T21:14:56.857Z,1606338896.857 [Module Loader](DEBUG): Loading Module at Modules/Dock.so
2020-11-25T21:14:56.961Z,1606338896.961 [Module Loader](DEBUG): Loaded Module: Dock (Contains behaviors and commands for docking)
2020-11-25T21:14:56.962Z,1606338896.962 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2020-11-25T21:14:57.028Z,1606338897.028 [VerticalControl](DEBUG): Construct VerticalControl.
2020-11-25T21:14:57.086Z,1606338897.086 [VerticalControl] Loaded
2020-11-25T21:14:57.086Z,1606338897.086 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2020-11-25T21:14:57.087Z,1606338897.087 [HorizontalControl](DEBUG): Construct HorizontalControl.
2020-11-25T21:14:57.123Z,1606338897.123 [HorizontalControl] Loaded
2020-11-25T21:14:57.123Z,1606338897.123 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2020-11-25T21:14:57.124Z,1606338897.124 [SpeedControl](DEBUG): Construct SpeedControl.
2020-11-25T21:14:57.126Z,1606338897.126 [SpeedControl] Loaded
2020-11-25T21:14:57.127Z,1606338897.127 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2020-11-25T21:14:57.127Z,1606338897.127 [LoopControl](DEBUG): Construct LoopControl.
2020-11-25T21:14:57.128Z,1606338897.128 [LoopControl] Loaded
2020-11-25T21:14:57.128Z,1606338897.128 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2020-11-25T21:14:57.129Z,1606338897.129 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2020-11-25T21:14:57.129Z,1606338897.129 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2020-11-25T21:14:57.183Z,1606338897.183 [DepthRateCalculator] Loaded
2020-11-25T21:14:57.183Z,1606338897.183 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2020-11-25T21:14:57.186Z,1606338897.186 [PitchRateCalculator] Loaded
2020-11-25T21:14:57.186Z,1606338897.186 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2020-11-25T21:14:57.195Z,1606338897.195 [SpeedCalculator] Loaded
2020-11-25T21:14:57.196Z,1606338897.196 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2020-11-25T21:14:57.206Z,1606338897.206 [TempGradientCalculator] Loaded
2020-11-25T21:14:57.207Z,1606338897.207 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2020-11-25T21:14:57.209Z,1606338897.209 [YawRateCalculator] Loaded
2020-11-25T21:14:57.209Z,1606338897.209 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2020-11-25T21:14:57.223Z,1606338897.223 [ElevatorOffsetCalculator] Loaded
2020-11-25T21:14:57.224Z,1606338897.224 [ComponentRegistry](DEBUG): SyncComponent "ElevatorOffsetCalculator" handled in the control thread.
2020-11-25T21:14:57.224Z,1606338897.224 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2020-11-25T21:14:57.225Z,1606338897.225 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2020-11-25T21:14:57.266Z,1606338897.266 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2020-11-25T21:14:57.267Z,1606338897.267 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2020-11-25T21:14:57.406Z,1606338897.406 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2020-11-25T21:14:57.406Z,1606338897.406 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2020-11-25T21:14:57.762Z,1606338897.762 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2020-11-25T21:14:57.763Z,1606338897.763 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2020-11-25T21:14:57.895Z,1606338897.895 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2020-11-25T21:14:57.895Z,1606338897.895 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2020-11-25T21:14:58.464Z,1606338898.464 [AHRS_M2](DEBUG): LcmSlateWriter::add(): platform_orientation
2020-11-25T21:14:58.467Z,1606338898.467 [AHRS_M2](INFO): created writer for : platform_orientation
2020-11-25T21:14:58.469Z,1606338898.469 [AHRS_M2](DEBUG): LcmSlateWriter::add(): platform_magnetic_orientation
2020-11-25T21:14:58.472Z,1606338898.472 [AHRS_M2](INFO): created writer for : platform_magnetic_orientation
2020-11-25T21:14:58.472Z,1606338898.472 [AHRS_M2](DEBUG): LcmSlateWriter::add(): platform_pitch_angle
2020-11-25T21:14:58.475Z,1606338898.475 [AHRS_M2](INFO): created writer for : platform_pitch_angle
2020-11-25T21:14:58.475Z,1606338898.475 [AHRS_M2](DEBUG): LcmSlateWriter::add(): platform_roll_angle
2020-11-25T21:14:58.478Z,1606338898.478 [AHRS_M2](INFO): created writer for : platform_roll_angle
2020-11-25T21:14:58.514Z,1606338898.514 [AHRS_M2] Loaded
2020-11-25T21:14:58.515Z,1606338898.515 [ComponentRegistry](DEBUG): SyncComponent "AHRS_M2" handled in the control thread.
2020-11-25T21:14:58.607Z,1606338898.607 [DataOverHttps] Loaded
2020-11-25T21:14:58.607Z,1606338898.607 [ComponentRegistry](DEBUG): Component "DataOverHttps" handled in its own thread.
2020-11-25T21:14:58.608Z,1606338898.608 [DataOverHttps ThreadHandler](DEBUG): Created PCaller Thread at 4090F4E0
2020-11-25T21:14:58.609Z,1606338898.609 [DataOverHttps ThreadHandler](INFO): Protected caller Thread ID is 2162
2020-11-25T21:14:58.625Z,1606338898.625 [Depth_Keller] Loaded
2020-11-25T21:14:58.625Z,1606338898.625 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2020-11-25T21:14:58.680Z,1606338898.680 [NAL9602] Loaded
2020-11-25T21:14:58.680Z,1606338898.680 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2020-11-25T21:14:58.706Z,1606338898.706 [Onboard] Loaded
2020-11-25T21:14:58.706Z,1606338898.706 [ComponentRegistry](DEBUG): Component "Onboard" handled in its own thread.
2020-11-25T21:14:58.707Z,1606338898.707 [Onboard ThreadHandler](DEBUG): Created PCaller Thread at 4093F4E0
2020-11-25T21:14:58.707Z,1606338898.707 [Onboard ThreadHandler](INFO): Protected caller Thread ID is 2163
2020-11-25T21:14:58.718Z,1606338898.718 [Radio_Surface] Loaded
2020-11-25T21:14:58.718Z,1606338898.718 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2020-11-25T21:14:58.721Z,1606338898.721 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 4096F4E0
2020-11-25T21:14:58.721Z,1606338898.721 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 2164
2020-11-25T21:14:58.748Z,1606338898.748 [RDI_Pathfinder] Loaded
2020-11-25T21:14:58.748Z,1606338898.748 [ComponentRegistry](DEBUG): SyncComponent "RDI_Pathfinder" handled in the control thread.
2020-11-25T21:14:58.819Z,1606338898.819 [DAT] Loaded
2020-11-25T21:14:58.819Z,1606338898.819 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2020-11-25T21:14:59.610Z,1606338899.610 [BPC1] Loaded
2020-11-25T21:14:59.610Z,1606338899.610 [ComponentRegistry](DEBUG): SyncComponent "BPC1" handled in the control thread.
2020-11-25T21:14:59.611Z,1606338899.611 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2020-11-25T21:14:59.611Z,1606338899.611 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2020-11-25T21:14:59.712Z,1606338899.712 [DeadReckonUsingMultipleVelocitySources] Loaded
2020-11-25T21:14:59.712Z,1606338899.712 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2020-11-25T21:14:59.722Z,1606338899.722 [NavChart] Loaded
2020-11-25T21:14:59.723Z,1606338899.723 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2020-11-25T21:14:59.726Z,1606338899.726 [UniversalFixResidualReporter] Loaded
2020-11-25T21:14:59.727Z,1606338899.727 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2020-11-25T21:14:59.727Z,1606338899.727 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2020-11-25T21:14:59.728Z,1606338899.728 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2020-11-25T21:14:59.895Z,1606338899.895 [SBIT](DEBUG): Construct Startup Built In Test.
2020-11-25T21:14:59.904Z,1606338899.904 [SBIT] Loaded
2020-11-25T21:14:59.904Z,1606338899.904 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2020-11-25T21:14:59.905Z,1606338899.905 [IBIT](DEBUG): Construct Initiated Built In Test.
2020-11-25T21:14:59.917Z,1606338899.917 [IBIT] Loaded
2020-11-25T21:14:59.917Z,1606338899.917 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2020-11-25T21:14:59.920Z,1606338899.920 [CBIT](DEBUG): Construct Continuous Built In Test.
2020-11-25T21:15:00.014Z,1606338900.014 [CBIT] Loaded
2020-11-25T21:15:00.014Z,1606338900.014 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2020-11-25T21:15:00.014Z,1606338900.014 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2020-11-25T21:15:00.015Z,1606338900.015 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2020-11-25T21:15:00.648Z,1606338900.648 [BuoyancyServo] Loaded
2020-11-25T21:15:00.649Z,1606338900.649 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2020-11-25T21:15:00.714Z,1606338900.714 [ElevatorServo] Loaded
2020-11-25T21:15:00.714Z,1606338900.714 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2020-11-25T21:15:00.741Z,1606338900.741 [MassServo] Loaded
2020-11-25T21:15:00.742Z,1606338900.742 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2020-11-25T21:15:00.757Z,1606338900.757 [RudderServo] Loaded
2020-11-25T21:15:00.757Z,1606338900.757 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2020-11-25T21:15:00.772Z,1606338900.772 [ThrusterServo] Loaded
2020-11-25T21:15:00.772Z,1606338900.772 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2020-11-25T21:15:00.772Z,1606338900.772 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2020-11-25T21:15:00.773Z,1606338900.773 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2020-11-25T21:15:00.803Z,1606338900.803 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2020-11-25T21:15:00.804Z,1606338900.804 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2020-11-25T21:15:01.108Z,1606338901.108 [BackSeatDriver] Loaded
2020-11-25T21:15:01.109Z,1606338901.109 [ComponentRegistry](DEBUG): Component "BackSeatDriver" handled in its own thread.
2020-11-25T21:15:01.110Z,1606338901.110 [BackSeatDriver ThreadHandler](DEBUG): Created PCaller Thread at 40B074E0
2020-11-25T21:15:01.110Z,1606338901.110 [BackSeatDriver ThreadHandler](INFO): Protected caller Thread ID is 2165
2020-11-25T21:15:01.130Z,1606338901.130 [CTD_Seabird](DEBUG): LcmSlateWriter::add(): sea_water_density
2020-11-25T21:15:01.133Z,1606338901.133 [CTD_Seabird](INFO): created writer for : sea_water_density
2020-11-25T21:15:01.133Z,1606338901.133 [CTD_Seabird](DEBUG): LcmSlateWriter::add(): depth
2020-11-25T21:15:01.136Z,1606338901.136 [CTD_Seabird](INFO): created writer for : depth
2020-11-25T21:15:01.136Z,1606338901.136 [CTD_Seabird](DEBUG): LcmSlateWriter::add(): sea_water_pressure
2020-11-25T21:15:01.139Z,1606338901.139 [CTD_Seabird](INFO): created writer for : sea_water_pressure
2020-11-25T21:15:01.139Z,1606338901.139 [CTD_Seabird](DEBUG): LcmSlateWriter::add(): sea_water_salinity
2020-11-25T21:15:01.142Z,1606338901.142 [CTD_Seabird](INFO): created writer for : sea_water_salinity
2020-11-25T21:15:01.143Z,1606338901.143 [CTD_Seabird](DEBUG): LcmSlateWriter::add(): sea_water_temperature
2020-11-25T21:15:01.145Z,1606338901.145 [CTD_Seabird](INFO): created writer for : sea_water_temperature
2020-11-25T21:15:01.146Z,1606338901.146 [CTD_Seabird](DEBUG): LcmSlateWriter::add(): sea_water_electrical_conductivity
2020-11-25T21:15:01.149Z,1606338901.149 [CTD_Seabird](INFO): created writer for : sea_water_electrical_conductivity
2020-11-25T21:15:01.150Z,1606338901.150 [CTD_Seabird](DEBUG): LcmSlateWriter::add(): speed_of_sound_in_sea_water
2020-11-25T21:15:01.153Z,1606338901.153 [CTD_Seabird](INFO): created writer for : speed_of_sound_in_sea_water
2020-11-25T21:15:01.153Z,1606338901.153 [CTD_Seabird](DEBUG): LcmSlateWriter::add(): mass_concentration_of_oxygen_in_sea_water
2020-11-25T21:15:01.156Z,1606338901.156 [CTD_Seabird](INFO): created writer for : mass_concentration_of_oxygen_in_sea_water
2020-11-25T21:15:01.157Z,1606338901.157 [CTD_Seabird](DEBUG): LcmSlateWriter::add(DAtaURI): CTD_Seabird.sea_water_dissolved_oxygen_freq
2020-11-25T21:15:01.157Z,1606338901.157 [CTD_Seabird](DEBUG): LcmSlateWriter::add(): dataName: sea_water_dissolved_oxygen_freq
2020-11-25T21:15:01.173Z,1606338901.173 [CTD_Seabird] Loaded
2020-11-25T21:15:01.173Z,1606338901.173 [ComponentRegistry](DEBUG): Component "CTD_Seabird" handled in its own thread.
2020-11-25T21:15:01.174Z,1606338901.174 [CTD_Seabird ThreadHandler](DEBUG): Created PCaller Thread at 40B374E0
2020-11-25T21:15:01.175Z,1606338901.175 [CTD_Seabird ThreadHandler](INFO): Protected caller Thread ID is 2166
2020-11-25T21:15:01.193Z,1606338901.193 [PAR_Licor] Loaded
2020-11-25T21:15:01.193Z,1606338901.193 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2020-11-25T21:15:01.206Z,1606338901.206 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.Output470
2020-11-25T21:15:01.206Z,1606338901.206 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: Output470
2020-11-25T21:15:01.208Z,1606338901.208 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.Output650
2020-11-25T21:15:01.208Z,1606338901.208 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: Output650
2020-11-25T21:15:01.210Z,1606338901.210 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.OutputChl
2020-11-25T21:15:01.210Z,1606338901.210 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: OutputChl
2020-11-25T21:15:01.212Z,1606338901.212 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.VolumeScatCoeff117deg470nm
2020-11-25T21:15:01.212Z,1606338901.212 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: VolumeScatCoeff117deg470nm
2020-11-25T21:15:01.214Z,1606338901.214 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.VolumeScatCoeff117deg650nm
2020-11-25T21:15:01.214Z,1606338901.214 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: VolumeScatCoeff117deg650nm
2020-11-25T21:15:01.217Z,1606338901.217 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.BackscatteringCoeff470nm
2020-11-25T21:15:01.217Z,1606338901.217 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: BackscatteringCoeff470nm
2020-11-25T21:15:01.219Z,1606338901.219 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.BackscatteringCoeff650nm
2020-11-25T21:15:01.219Z,1606338901.219 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: BackscatteringCoeff650nm
2020-11-25T21:15:01.221Z,1606338901.221 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): mass_concentration_of_chlorophyll_in_sea_water
2020-11-25T21:15:01.223Z,1606338901.223 [WetLabsBB2FL](INFO): created writer for : mass_concentration_of_chlorophyll_in_sea_water
2020-11-25T21:15:01.224Z,1606338901.224 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.bin_median_mass_concentration_of_chlorophyll_in_sea_water
2020-11-25T21:15:01.224Z,1606338901.224 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: bin_median_mass_concentration_of_chlorophyll_in_sea_water
2020-11-25T21:15:01.226Z,1606338901.226 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.bin_mean_mass_concentration_of_chlorophyll_in_sea_water
2020-11-25T21:15:01.226Z,1606338901.226 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: bin_mean_mass_concentration_of_chlorophyll_in_sea_water
2020-11-25T21:15:01.228Z,1606338901.228 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.bin_variance_mass_concentration_of_chlorophyll_in_sea_water
2020-11-25T21:15:01.228Z,1606338901.228 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: bin_variance_mass_concentration_of_chlorophyll_in_sea_water
2020-11-25T21:15:01.230Z,1606338901.230 [WetLabsBB2FL] Loaded
2020-11-25T21:15:01.230Z,1606338901.230 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2020-11-25T21:15:01.231Z,1606338901.231 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 40B674E0
2020-11-25T21:15:01.232Z,1606338901.232 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 2167
2020-11-25T21:15:01.476Z,1606338901.476 [WetLabsUBAT..SerialDriver](INFO): Created logger
2020-11-25T21:15:01.477Z,1606338901.477 [WetLabsUBAT..SerialDriver](INFO): publishing on LCM channel WetLabsUBAT
2020-11-25T21:15:01.477Z,1606338901.477 [WetLabsUBAT..StreamSerialDriver](INFO): Created logger
2020-11-25T21:15:01.482Z,1606338901.482 [WetLabsUBAT](INFO): readConfig(): serialNo_: UBAT0051, uartName_: /dev/ttyC1, optionalArgs_: 
2020-11-25T21:15:01.482Z,1606338901.482 [WetLabsUBAT](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsUBAT.biolum_potential
2020-11-25T21:15:01.482Z,1606338901.482 [WetLabsUBAT](DEBUG): LcmSlateWriter::add(): dataName: biolum_potential
2020-11-25T21:15:01.484Z,1606338901.484 [WetLabsUBAT](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsUBAT.flow_rate
2020-11-25T21:15:01.484Z,1606338901.484 [WetLabsUBAT](DEBUG): LcmSlateWriter::add(): dataName: flow_rate
2020-11-25T21:15:01.487Z,1606338901.487 [WetLabsUBAT] Loaded
2020-11-25T21:15:01.488Z,1606338901.488 [ComponentRegistry](DEBUG): Component "WetLabsUBAT" handled in its own thread.
2020-11-25T21:15:01.490Z,1606338901.490 [WetLabsUBAT ThreadHandler](DEBUG): Created PCaller Thread at 40B974E0
2020-11-25T21:15:01.491Z,1606338901.491 [WetLabsUBAT ThreadHandler](INFO): Protected caller Thread ID is 2168
2020-11-25T21:15:01.491Z,1606338901.491 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2020-11-25T21:15:01.495Z,1606338901.495 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2020-11-25T21:15:01.496Z,1606338901.496 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2020-11-25T21:15:01.505Z,1606338901.505 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2020-11-25T21:15:01.506Z,1606338901.506 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 40BC74E0
2020-11-25T21:15:01.506Z,1606338901.506 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 2169
2020-11-25T21:15:01.511Z,1606338901.511 [Supervisor](INFO): Main Thread ID is 2075
2020-11-25T21:15:01.511Z,1606338901.511 [Supervisor](DEBUG): Running supervisor.
2020-11-25T21:15:01.512Z,1606338901.512 [CommandLine ThreadHandler](INFO): Handler Thread ID is 2170
2020-11-25T21:15:01.515Z,1606338901.515 [controlThread ThreadHandler](INFO): Handler Thread ID is 2171
2020-11-25T21:15:01.515Z,1606338901.515 [controlThread](DEBUG): Initializing ControlThread
2020-11-25T21:15:01.517Z,1606338901.517 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2020-11-25T21:15:01.518Z,1606338901.518 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2020-11-25T21:15:01.519Z,1606338901.519 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2020-11-25T21:15:01.520Z,1606338901.520 [LoopControl](DEBUG): Initialize LoopControlComponent.
2020-11-25T21:15:01.520Z,1606338901.520 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2020-11-25T21:15:01.520Z,1606338901.520 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2020-11-25T21:15:01.521Z,1606338901.521 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2020-11-25T21:15:01.521Z,1606338901.521 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2020-11-25T21:15:01.521Z,1606338901.521 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2020-11-25T21:15:01.522Z,1606338901.522 [ElevatorOffsetCalculator](DEBUG): Initializing ElevatorOffsetCalculator.
2020-11-25T21:15:01.524Z,1606338901.524 [NavChart](DEBUG): Initialize NavChart Navigation.
2020-11-25T21:15:01.525Z,1606338901.525 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2020-11-25T21:15:01.525Z,1606338901.525 [SBIT](INFO): Initialize SBIT Component.
2020-11-25T21:15:01.526Z,1606338901.526 [SBIT](IMPORTANT): git: 2020-11-24
2020-11-25T21:15:01.526Z,1606338901.526 [SBIT](INFO): git hash: adde971cea593344b7c42ced3277a520a74b3766
2020-11-25T21:15:01.526Z,1606338901.526 [SBIT](IMPORTANT): Kernel Release: 2.6.27.8
2020-11-25T21:15:01.527Z,1606338901.527 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #1 PREEMPT Thu Feb 21 11:17:40 PST 2019
Kernel Reported: #1 PREEMPT Thu Aug 6 12:04:53 PDT 2020
2020-11-25T21:15:01.528Z,1606338901.528 [SBIT](INFO): Beginning SBIT in 49.000000 seconds.
2020-11-25T21:15:01.529Z,1606338901.529 [IBIT](INFO): Initialize IBIT Component.
2020-11-25T21:15:01.529Z,1606338901.529 [CBIT](DEBUG): Initialize CBIT Component.
2020-11-25T21:15:01.530Z,1606338901.530 [logger ThreadHandler](INFO): Handler Thread ID is 2172
2020-11-25T21:15:01.543Z,1606338901.543 [CBIT](DEBUG): Initialized mux pins.
2020-11-25T21:15:01.543Z,1606338901.543 [CBIT](DEBUG): Initializing the watchdog timer.
2020-11-25T21:15:01.548Z,1606338901.548 [DataOverHttps ThreadHandler](INFO): Handler Thread ID is 2173
2020-11-25T21:15:01.549Z,1606338901.549 [DataOverHttps](DEBUG): dashIP=134.89.2.23 starts with a digit so assuming it is a numeric IP
2020-11-25T21:15:01.556Z,1606338901.556 [Onboard ThreadHandler](INFO): Handler Thread ID is 2174
2020-11-25T21:15:01.568Z,1606338901.568 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2020-11-25T21:15:01.568Z,1606338901.568 [CBIT](DEBUG): Initializing heartbeat.
2020-11-25T21:15:01.577Z,1606338901.577 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 2175
2020-11-25T21:15:01.599Z,1606338901.599 [BackSeatDriver ThreadHandler](INFO): Handler Thread ID is 2176
2020-11-25T21:15:01.611Z,1606338901.611 [CTD_Seabird ThreadHandler](INFO): Handler Thread ID is 2177
2020-11-25T21:15:01.612Z,1606338901.612 [CTD_Seabird](DEBUG): Initializing CTD_Seabird.
2020-11-25T21:15:01.616Z,1606338901.616 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 2179
2020-11-25T21:15:01.617Z,1606338901.617 [WetLabsBB2FL](INFO): Powering down
2020-11-25T21:15:01.628Z,1606338901.628 [WetLabsUBAT ThreadHandler](INFO): Handler Thread ID is 2180
2020-11-25T21:15:01.635Z,1606338901.635 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 2181
2020-11-25T21:15:01.639Z,1606338901.639 [CBIT](DEBUG): Deactivating GF circuits.
2020-11-25T21:15:01.639Z,1606338901.639 [CBIT](DEBUG): Deactivating emergency mode.
2020-11-25T21:15:01.643Z,1606338901.643 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US1WC07M.000
2020-11-25T21:15:01.643Z,1606338901.643 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2020-11-25T21:15:01.644Z,1606338901.644 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US2WC11M.000
2020-11-25T21:15:01.644Z,1606338901.644 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2020-11-25T21:15:01.644Z,1606338901.644 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US3CA52M.000
2020-11-25T21:15:01.644Z,1606338901.644 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2020-11-25T21:15:01.644Z,1606338901.644 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US4CA60M.000
2020-11-25T21:15:01.644Z,1606338901.644 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2020-11-25T21:15:01.645Z,1606338901.645 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA50M.000
2020-11-25T21:15:01.645Z,1606338901.645 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2020-11-25T21:15:01.645Z,1606338901.645 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA61M.000
2020-11-25T21:15:01.645Z,1606338901.645 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2020-11-25T21:15:01.645Z,1606338901.645 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA62M.000
2020-11-25T21:15:01.645Z,1606338901.645 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2020-11-25T21:15:01.645Z,1606338901.645 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA83M.000
2020-11-25T21:15:01.646Z,1606338901.646 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2020-11-25T21:15:01.675Z,1606338901.675 [CBIT](DEBUG): Backplane powered.
2020-11-25T21:15:01.680Z,1606338901.680 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2020-11-25T21:15:01.699Z,1606338901.699 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2020-11-25T21:15:01.727Z,1606338901.727 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2020-11-25T21:15:01.727Z,1606338901.727 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2020-11-25T21:15:01.799Z,1606338901.799 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2020-11-25T21:15:01.812Z,1606338901.812 [Default:A.Wait](DEBUG): Construct Wait.
2020-11-25T21:15:01.814Z,1606338901.814 [Default:B.GoToSurface](DEBUG): Construct GoToSurface.
2020-11-25T21:15:01.845Z,1606338901.845 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2020-11-25T21:15:01.865Z,1606338901.865 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2020-11-25T21:15:01.887Z,1606338901.887 [Default:E.Execute](DEBUG): Construct Execute.
2020-11-25T21:15:01.891Z,1606338901.891 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xmlns="Tethys"
         xmlns:Units="Tethys/Units"
         xmlns:Guidance="Tethys/Guidance"
         xmlns:Universal="Tethys/Universal"
         xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                             Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                             Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                             Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
         Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:Wait>
        <Description>
            Wait a moment to see if the scheduler starts a new mission before
            starting to actually run Default.
        </Description>
        <Sequence/>
        <Setting><Guidance:Wait.duration/><Units:second/><Value>13</Value></Setting>
    </Guidance:Wait>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn on</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2020-11-25T21:15:01.905Z,1606338901.905 [controlThread](DEBUG): Component order: CycleStarter,AHRS_M2,Depth_Keller,NAL9602,RDI_Pathfinder,DAT,BPC1,PAR_Licor,Depth_Keller,PAR_Licor,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,YawRateCalculator,ElevatorOffsetCalculator,DeadReckonUsingMultipleVelocitySources,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2020-11-25T21:15:01.920Z,1606338901.920 [AHRS_M2](DEBUG): Initializing AHRS_M2.
2020-11-25T21:15:01.952Z,1606338901.952 [Depth_Keller](ERROR): Pressure reading out of range: 1650.297119 decibar
2020-11-25T21:15:01.970Z,1606338901.970 [DAT](INFO): Powered 24V power converter LCB with command: ! echo 1 > /dev/loadB2
2020-11-25T21:15:01.970Z,1606338901.970 [DAT](INFO): Powering up
2020-11-25T21:15:01.970Z,1606338901.970 [DAT](DEBUG): Initializing DAT.
2020-11-25T21:15:01.983Z,1606338901.983 [Radio_Surface](INFO): Powering up
2020-11-25T21:15:02.020Z,1606338902.020 [CommandLine](IMPORTANT): got command ! echo 1 > /dev/loadB2
2020-11-25T21:15:02.134Z,1606338902.134 [DepthRateCalculator](ERROR): Depth measurement is not active
2020-11-25T21:15:02.185Z,1606338902.185 [BuoyancyServo](DEBUG): Initializing EZServoServo.
2020-11-25T21:15:02.191Z,1606338902.191 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2020-11-25T21:15:02.193Z,1606338902.193 [ElevatorServo](DEBUG): Initializing EZServoServo.
2020-11-25T21:15:02.199Z,1606338902.199 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2020-11-25T21:15:02.200Z,1606338902.200 [MassServo](DEBUG): Initializing EZServoServo.
2020-11-25T21:15:02.207Z,1606338902.207 [MassServo](DEBUG): Initializing MassServo.
2020-11-25T21:15:02.208Z,1606338902.208 [RudderServo](DEBUG): Initializing EZServoServo.
2020-11-25T21:15:02.215Z,1606338902.215 [RudderServo](DEBUG): Initializing RudderServo.
2020-11-25T21:15:02.216Z,1606338902.216 [ThrusterServo](DEBUG): Initializing EZServoServo.
2020-11-25T21:15:02.223Z,1606338902.223 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2020-11-25T21:15:02.355Z,1606338902.355 [DepthRateCalculator](ERROR): Depth measurement is not active
2020-11-25T21:15:03.039Z,1606338903.039 [RudderServo](ERROR): Rudder initialization uart error serial timeout
2020-11-25T21:15:03.039Z,1606338903.039 [RudderServo](FAULT): Rudder failed to initialize
2020-11-25T21:15:03.039Z,1606338903.039 [RudderServo] Communications Fault, FailCount= 1
2020-11-25T21:15:03.039Z,1606338903.039 [RudderServo](ERROR): Communications Fault
2020-11-25T21:15:03.175Z,1606338903.175 [CBIT](ERROR): Communications Fault in component: RudderServo
2020-11-25T21:15:03.344Z,1606338903.344 [RudderServo](DEBUG): Uninitialize Rudder Servo.
2020-11-25T21:15:03.344Z,1606338903.344 [RudderServo](INFO): Powering down
2020-11-25T21:15:04.036Z,1606338904.036 [RudderServo](DEBUG): Initializing EZServoServo.
2020-11-25T21:15:04.156Z,1606338904.156 [RudderServo](DEBUG): Initializing RudderServo.
2020-11-25T21:15:04.160Z,1606338904.160 [CBIT](INFO): Clearing failed state for component RudderServo
2020-11-25T21:15:04.161Z,1606338904.161 [RudderServo] No Fault, FailCount= 1
2020-11-25T21:15:08.647Z,1606338908.647 [CTD_Seabird](ERROR): Device message queue exceeded the allowed limit.
2020-11-25T21:15:15.253Z,1606338915.253 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.004787
2020-11-25T21:15:29.044Z,1606338929.044 [NAL9602](INFO): Powering up NAL9602
2020-11-25T21:15:39.952Z,1606338939.952 [NAL9602](INFO): NAL9602 initialized
2020-11-25T21:15:50.885Z,1606338950.885 [SBIT](IMPORTANT): Beginning Startup BIT
2020-11-25T21:15:50.889Z,1606338950.889 [CBIT](IMPORTANT): Beginning ground fault scan
2020-11-25T21:16:01.824Z,1606338961.824 [CBIT](IMPORTANT): No ground fault detected
mA:
CHAN A0 (Batt): -0.010301
CHAN A1 (24V): -0.001985
CHAN A2 (12V): -0.007414
CHAN A3 (5V): -0.002504
CHAN B0 (3.3V): 0.000588
CHAN B1 (3.15aV): 0.000096
CHAN B2 (3.15bV): 0.000039
CHAN B3 (GND): 0.001707
OPEN: 0.004903
Full Scale Calc: 4.765 mA, -1.589 mA
2020-11-25T21:16:02.173Z,1606338962.173 [DAT](FAULT): failed to initialize, no bytes available on serial interface
2020-11-25T21:16:02.173Z,1606338962.173 [DAT] Communications Fault, FailCount= 1
2020-11-25T21:16:02.173Z,1606338962.173 [DAT](ERROR): Communications Fault
2020-11-25T21:16:02.229Z,1606338962.229 [CBIT](ERROR): Communications Fault in component: DAT
2020-11-25T21:16:02.592Z,1606338962.592 [DAT](INFO): Powering down
2020-11-25T21:16:03.464Z,1606338963.464 [CBIT](INFO): Clearing failed state for component DAT
2020-11-25T21:16:03.464Z,1606338963.464 [DAT] No Fault, FailCount= 1
2020-11-25T21:16:05.828Z,1606338965.828 [DAT](INFO): Powered 24V power converter LCB with command: ! echo 1 > /dev/loadB2
2020-11-25T21:16:05.828Z,1606338965.828 [DAT](INFO): Powering up
2020-11-25T21:16:05.828Z,1606338965.828 [DAT](DEBUG): Initializing DAT.
2020-11-25T21:16:05.884Z,1606338965.884 [CommandLine](IMPORTANT): got command ! echo 1 > /dev/loadB2
2020-11-25T21:16:19.978Z,1606338979.978 [DAT](INFO): commRate: 800
2020-11-25T21:16:22.380Z,1606338982.380 [DAT](INFO): entering command mode
2020-11-25T21:16:22.793Z,1606338982.793 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:23.182Z,1606338983.182 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:23.592Z,1606338983.592 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:23.989Z,1606338983.989 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:24.416Z,1606338984.416 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:24.821Z,1606338984.821 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:25.216Z,1606338985.216 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:25.626Z,1606338985.626 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:26.010Z,1606338986.010 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:26.413Z,1606338986.413 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:26.828Z,1606338986.828 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:27.218Z,1606338987.218 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:27.641Z,1606338987.641 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:28.026Z,1606338988.026 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:28.433Z,1606338988.433 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:28.847Z,1606338988.847 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:29.243Z,1606338989.243 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:29.659Z,1606338989.659 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:30.081Z,1606338990.081 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:30.468Z,1606338990.468 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:30.872Z,1606338990.872 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:31.282Z,1606338991.282 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:31.677Z,1606338991.677 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:32.065Z,1606338992.065 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:32.506Z,1606338992.506 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:32.878Z,1606338992.878 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:33.281Z,1606338993.281 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:33.696Z,1606338993.695 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:34.095Z,1606338994.095 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:34.514Z,1606338994.514 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:34.912Z,1606338994.912 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:35.312Z,1606338995.312 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:35.734Z,1606338995.734 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:36.128Z,1606338996.128 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:36.524Z,1606338996.524 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:36.928Z,1606338996.928 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:37.331Z,1606338997.331 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:37.757Z,1606338997.757 [DAT](DEBUG): checking for command mode acknowledgment
2020-11-25T21:16:37.758Z,1606338997.758 [DAT](FAULT): failed to enter command mode
2020-11-25T21:16:38.134Z,1606338998.134 [DAT](INFO): entering command mode
2020-11-25T21:16:38.534Z,1606338998.534 [DAT](INFO): setting verbose to 3
2020-11-25T21:16:38.946Z,1606338998.946 [DAT](INFO): set verbose to 3
2020-11-25T21:16:38.947Z,1606338998.947 [DAT](INFO): setting DatVerbose to 27440
2020-11-25T21:16:39.369Z,1606338999.369 [DAT](INFO): set DatVerbose to 27440
2020-11-25T21:16:39.369Z,1606338999.369 [DAT](INFO): setting transmit power to 8
2020-11-25T21:16:39.750Z,1606338999.750 [DAT](INFO): set transmit power to 8
2020-11-25T21:16:39.751Z,1606338999.751 [DAT](INFO): setting local address to 9
2020-11-25T21:16:40.175Z,1606339000.175 [DAT](INFO): set local address to 9
2020-11-25T21:16:45.016Z,1606339005.016 [SBIT](IMPORTANT): SBIT PASSED
2020-11-25T21:16:45.016Z,1606339005.016 [SBIT](IMPORTANT): Listing configuration overrides from Data/persisted.cfg
2020-11-25T21:16:45.017Z,1606339005.017 [SBIT](IMPORTANT): BPC1.batteryMissingStickThreshold=6 count;

2020-11-25T21:16:45.017Z,1606339005.017 [SBIT](IMPORTANT): CBIT.gf24Offset=145 microampere;

2020-11-25T21:16:45.017Z,1606339005.017 [SBIT](IMPORTANT): DAT.loadAtStartup=1 bool;

2020-11-25T21:16:45.017Z,1606339005.017 [SBIT](IMPORTANT): DAT.sbdAddress=-1 enum;

2020-11-25T21:16:45.018Z,1606339005.018 [SBIT](IMPORTANT): DAT.surfaceThreshold=100 meter;

2020-11-25T21:16:45.018Z,1606339005.018 [SBIT](IMPORTANT): DAT.verbosity=0 count;

2020-11-25T21:16:45.018Z,1606339005.018 [SBIT](IMPORTANT): DropWeight.loadAtStartup=0 bool;

2020-11-25T21:16:45.018Z,1606339005.018 [SBIT](IMPORTANT): Express linearApproximation ThrusterServo.component_avgCurrent 50.000000 milliampere;

2020-11-25T21:16:45.018Z,1606339005.018 [SBIT](IMPORTANT): Express linearApproximation WetLabsUBAT.flow_rate 1.000000 liter_per_second;

2020-11-25T21:16:45.018Z,1606339005.018 [SBIT](IMPORTANT): Express linearApproximation height_above_sea_floor 5.000000 meter;

2020-11-25T21:16:45.018Z,1606339005.018 [SBIT](IMPORTANT): PAR_Licor.loadAtStartup=1 bool;

2020-11-25T21:16:45.018Z,1606339005.018 [SBIT](IMPORTANT): PAR_Licor.parCal=1.01146 none;

2020-11-25T21:16:45.018Z,1606339005.018 [SBIT](IMPORTANT): RDI_Pathfinder.loadAtStartup=1 bool;

2020-11-25T21:16:45.019Z,1606339005.019 [SBIT](IMPORTANT): VerticalControl.buoyancyNeutral=254.6 cubic_centimeter;

2020-11-25T21:16:45.019Z,1606339005.019 [SBIT](IMPORTANT): VerticalControl.massDefault=7.48 millimeter;

2020-11-25T21:16:45.019Z,1606339005.019 [SBIT](IMPORTANT): WetLabsUBAT.loadAtStartup=1 bool;

2020-11-25T21:16:45.434Z,1606339005.434 [MissionManager](IMPORTANT): Started mission Startup
2020-11-25T21:16:45.435Z,1606339005.435 [Startup] Running Loop=1
2020-11-25T21:16:45.435Z,1606339005.435 [Startup](DEBUG): Aggregate::initialize Startup
2020-11-25T21:16:45.435Z,1606339005.435 [Startup:A.GoToSurface] Running Loop=1
2020-11-25T21:16:45.435Z,1606339005.435 [Startup:A.GoToSurface](DEBUG): Initialize GoToSurfaceComponent.
2020-11-25T21:16:45.436Z,1606339005.436 [Startup:A.GoToSurface](DEBUG): No depth rate setting specified. Using default value of nan m/s.
2020-11-25T21:16:45.436Z,1606339005.436 [Startup:A.GoToSurface](DEBUG): No pitch setting specified. Using default value of nan degrees.
2020-11-25T21:16:45.436Z,1606339005.436 [Startup:A.GoToSurface](DEBUG): No speed setting specified. Using default value of 1.000000 m/s.
2020-11-25T21:16:45.437Z,1606339005.437 [Startup:A.GoToSurface](DEBUG): No surface timeout specified. Using default value of 1000.000000 seconds.
2020-11-25T21:16:45.437Z,1606339005.437 [Startup:A.GoToSurface](INFO): Received pitch timeout configuration 60.000000 seconds.
2020-11-25T21:16:45.439Z,1606339005.439 [Startup:StartupSatComms] Running Loop=1
2020-11-25T21:16:45.439Z,1606339005.439 [Startup:StartupSatComms](DEBUG): Aggregate::initialize Startup:StartupSatComms
2020-11-25T21:16:45.439Z,1606339005.439 [Startup:StartupSatComms:A] Running Loop=1
2020-11-25T21:16:45.835Z,1606339005.835 [Startup:StartupSatComms:A](DEBUG): Initialize ReadDataComponent to sense latitude_fix
2020-11-25T21:17:04.058Z,1606339024.058 [BPC1](ERROR): BPC1A failed to parse battery data due to unrecognized msg size.
2020-11-25T21:17:06.737Z,1606339026.737 [CommandLine](IMPORTANT): got command failComponent
2020-11-25T21:17:06.737Z,1606339026.737 [CommandLine](IMPORTANT): Failed components:
2020-11-25T21:17:06.737Z,1606339026.737 [CommandLine](IMPORTANT): No failed Components.
2020-11-25T21:17:20.584Z,1606339040.584 [CommandLine](IMPORTANT): got command configSet list
2020-11-25T21:17:20.584Z,1606339040.584 [CommandLine](IMPORTANT): Listing configuration overrides from Data/persisted.cfg
2020-11-25T21:17:20.585Z,1606339040.585 [CommandLine](IMPORTANT): BPC1.batteryMissingStickThreshold=6 count;

2020-11-25T21:17:20.585Z,1606339040.585 [CommandLine](IMPORTANT): CBIT.gf24Offset=145 microampere;

2020-11-25T21:17:20.585Z,1606339040.585 [CommandLine](IMPORTANT): DAT.loadAtStartup=1 bool;

2020-11-25T21:17:20.585Z,1606339040.585 [CommandLine](IMPORTANT): DAT.sbdAddress=-1 enum;

2020-11-25T21:17:20.585Z,1606339040.585 [CommandLine](IMPORTANT): DAT.surfaceThreshold=100 meter;

2020-11-25T21:17:20.585Z,1606339040.585 [CommandLine](IMPORTANT): DAT.verbosity=0 count;

2020-11-25T21:17:20.586Z,1606339040.586 [CommandLine](IMPORTANT): DropWeight.loadAtStartup=0 bool;

2020-11-25T21:17:20.586Z,1606339040.586 [CommandLine](IMPORTANT): Express linearApproximation ThrusterServo.component_avgCurrent 50.000000 milliampere;

2020-11-25T21:17:20.586Z,1606339040.586 [CommandLine](IMPORTANT): Express linearApproximation WetLabsUBAT.flow_rate 1.000000 liter_per_second;

2020-11-25T21:17:20.586Z,1606339040.586 [CommandLine](IMPORTANT): Express linearApproximation height_above_sea_floor 5.000000 meter;

2020-11-25T21:17:20.586Z,1606339040.586 [CommandLine](IMPORTANT): PAR_Licor.loadAtStartup=1 bool;

2020-11-25T21:17:20.586Z,1606339040.586 [CommandLine](IMPORTANT): PAR_Licor.parCal=1.01146 none;

2020-11-25T21:17:20.586Z,1606339040.586 [CommandLine](IMPORTANT): RDI_Pathfinder.loadAtStartup=1 bool;

2020-11-25T21:17:20.586Z,1606339040.586 [CommandLine](IMPORTANT): VerticalControl.buoyancyNeutral=254.6 cubic_centimeter;

2020-11-25T21:17:20.586Z,1606339040.586 [CommandLine](IMPORTANT): VerticalControl.massDefault=7.48 millimeter;

2020-11-25T21:17:20.587Z,1606339040.587 [CommandLine](IMPORTANT): WetLabsUBAT.loadAtStartup=1 bool;

2020-11-25T21:17:43.673Z,1606339063.673 [BPC1](ERROR): BPC1B failed to parse battery data due to unrecognized msg size.
2020-11-25T21:17:45.653Z,1606339065.653 [Startup:StartupSatComms:A](INFO): Timed out from 2020-11-25T21:16:45.4Z
2020-11-25T21:17:45.653Z,1606339065.653 [Startup:StartupSatComms:A] Stopped
2020-11-25T21:17:45.653Z,1606339065.653 [Startup:StartupSatComms:B] Running Loop=1
2020-11-25T21:17:46.033Z,1606339066.033 [Startup:StartupSatComms:B](DEBUG): Initialize ReadDataComponent to sense platform_communications
2020-11-25T21:17:51.024Z,1606339071.024 [CommandLine](IMPORTANT): got command show dependencies
2020-11-25T21:17:51.024Z,1606339071.024 [CommandLine](FAULT): Incomplete syntax. Try: help show
2020-11-25T21:17:57.577Z,1606339077.577 [CommandLine](IMPORTANT): got command show variable fwd
2020-11-25T21:17:57.700Z,1606339077.700 [CommandLine](IMPORTANT): VerticalControl.massPositionLimitFwd (millimeter)
2020-11-25T21:17:57.906Z,1606339077.906 [BPC1](ERROR): BPC1A failed to parse battery data due to unrecognized msg size.
2020-11-25T21:18:01.774Z,1606339081.774 [DeadReckonUsingMultipleVelocitySources] Software Fault, FailCount= 1
2020-11-25T21:18:01.774Z,1606339081.774 [DeadReckonUsingMultipleVelocitySources](ERROR): Software Fault
2020-11-25T21:18:01.784Z,1606339081.784 [CBIT](ERROR): Software Fault in component: DeadReckonUsingMultipleVelocitySources
2020-11-25T21:18:02.189Z,1606339082.189 [CBIT](INFO): Clearing failed state for component DeadReckonUsingMultipleVelocitySources
2020-11-25T21:18:02.189Z,1606339082.189 [DeadReckonUsingMultipleVelocitySources] No Fault, FailCount= 1
2020-11-25T21:18:12.217Z,1606339092.217 [CommandLine](IMPORTANT): got command get VerticalControl.massPositionLimitFwd
2020-11-25T21:18:12.217Z,1606339092.217 [CommandLine](IMPORTANT): VerticalControl.massPositionLimitFwd 40.000000 mm
2020-11-25T21:18:16.298Z,1606339096.298 [CommandLine](IMPORTANT): got command get VerticalControl.massPositionLimitAft
2020-11-25T21:18:16.299Z,1606339096.299 [CommandLine](IMPORTANT): VerticalControl.massPositionLimitAft -20.000000 mm
2020-11-25T21:18:24.390Z,1606339104.390 [BPC1](ERROR): BPC1B failed to parse battery stick message.
2020-11-25T21:18:27.756Z,1606339107.756 [DataOverHttps](INFO): Sending 39 bytes from file Logs/20201118T220059/Courier0007.lzma
2020-11-25T21:18:28.757Z,1606339108.757 [DataOverHttps](INFO): Moved sent file to Logs/20201118T220059/Courier0007.lzma.bak
2020-11-25T21:18:28.757Z,1606339108.757 [DataOverHttps](INFO): SBD MOMSN=13339115
2020-11-25T21:18:30.753Z,1606339110.753 [CommandLine](IMPORTANT): got command show stack
2020-11-25T21:18:30.753Z,1606339110.753 [CommandLine](IMPORTANT): Behavior Stack:

2020-11-25T21:18:30.753Z,1606339110.753 [Startup](IMPORTANT): Priority 0: Startup:A.GoToSurface
2020-11-25T21:18:30.753Z,1606339110.753 [Startup:StartupSatComms](IMPORTANT): Priority 1: Startup:StartupSatComms:B
2020-11-25T21:18:44.882Z,1606339124.882 [DataOverHttps](INFO): Sending 151 bytes from file Logs/20201125T211450/Courier0000.lzma
2020-11-25T21:18:45.801Z,1606339125.801 [Startup:StartupSatComms:B](INFO): Timed out from 2020-11-25T21:17:45.7Z
2020-11-25T21:18:45.801Z,1606339125.801 [Startup:StartupSatComms:B] Stopped
2020-11-25T21:18:45.801Z,1606339125.801 [Startup:StartupSatComms](INFO): Completed Startup:StartupSatComms
2020-11-25T21:18:45.801Z,1606339125.801 [Startup:StartupSatComms] Stopped
2020-11-25T21:18:45.801Z,1606339125.801 [Startup:StartupSatComms](DEBUG): Aggregate::uninitialize Startup:StartupSatComms
2020-11-25T21:18:45.802Z,1606339125.802 [Startup](INFO): Completed Startup
2020-11-25T21:18:45.802Z,1606339125.802 [MissionManager](INFO): Startup is completed.
2020-11-25T21:18:45.802Z,1606339125.802 [MissionManager](INFO): Uninitializing Mission Startup
2020-11-25T21:18:45.802Z,1606339125.802 [Startup] Stopped
2020-11-25T21:18:45.802Z,1606339125.802 [Startup](DEBUG): Aggregate::uninitialize Startup
2020-11-25T21:18:45.802Z,1606339125.802 [Startup:A.GoToSurface] Stopped
2020-11-25T21:18:45.803Z,1606339125.803 [Startup:A.GoToSurface](DEBUG): Uninitialize GoToSurfaceComponent.
2020-11-25T21:18:45.885Z,1606339125.885 [DataOverHttps](INFO): Moved sent file to Logs/20201125T211450/Courier0000.lzma.bak
2020-11-25T21:18:45.885Z,1606339125.885 [DataOverHttps](INFO): SBD MOMSN=13339117
2020-11-25T21:18:46.230Z,1606339126.230 [MissionManager](IMPORTANT): Started mission Default
2020-11-25T21:18:46.230Z,1606339126.230 [Default] Running Loop=1
2020-11-25T21:18:46.230Z,1606339126.230 [Default](DEBUG): Aggregate::initialize Default
2020-11-25T21:18:46.230Z,1606339126.230 [Default:B.GoToSurface] Running Loop=1
2020-11-25T21:18:46.230Z,1606339126.230 [Default:B.GoToSurface](DEBUG): Initialize GoToSurfaceComponent.
2020-11-25T21:18:46.230Z,1606339126.230 [Default:B.GoToSurface](DEBUG): No depth rate setting specified. Using default value of nan m/s.
2020-11-25T21:18:46.231Z,1606339126.231 [Default:B.GoToSurface](DEBUG): No pitch setting specified. Using default value of nan degrees.
2020-11-25T21:18:46.231Z,1606339126.231 [Default:B.GoToSurface](DEBUG): No speed setting specified. Using default value of 1.000000 m/s.
2020-11-25T21:18:46.231Z,1606339126.231 [Default:B.GoToSurface](DEBUG): No surface timeout specified. Using default value of 1000.000000 seconds.
2020-11-25T21:18:46.232Z,1606339126.232 [Default:B.GoToSurface](INFO): Received pitch timeout configuration 60.000000 seconds.
2020-11-25T21:18:46.232Z,1606339126.232 [Default:A.Wait] Running Loop=1
2020-11-25T21:18:46.232Z,1606339126.232 [Default:A.Wait](DEBUG): Initialize Wait Component.
2020-11-25T21:18:59.556Z,1606339139.556 [Default:A.Wait](INFO): Done Waiting.
2020-11-25T21:18:59.556Z,1606339139.556 [Default:A.Wait] Stopped
2020-11-25T21:18:59.556Z,1606339139.556 [Default:A.Wait](DEBUG): Uninitialize Wait Component.
2020-11-25T21:18:59.945Z,1606339139.945 [Default:CheckIn] Running Loop=1
2020-11-25T21:18:59.945Z,1606339139.945 [Default:CheckIn](DEBUG): Aggregate::initialize Default:CheckIn
2020-11-25T21:18:59.945Z,1606339139.945 [Default:CheckIn:Read_GPS] Running Loop=1
2020-11-25T21:19:00.349Z,1606339140.349 [Default:CheckIn:Read_GPS](DEBUG): Initialize ReadDataComponent to sense time_fix
2020-11-25T21:19:14.929Z,1606339154.929 [CommandLine](IMPORTANT): got command run ./Missions/Insert/Science.xml
2020-11-25T21:19:14.929Z,1606339154.929 [MissionManager](INFO): Loading Mission: ./Missions/Insert/Science.xml
2020-11-25T21:19:15.097Z,1606339155.097 [MissionManager](INFO): DefineArg Science.PeakDetectChlActive = 0 bool
2020-11-25T21:19:15.101Z,1606339155.101 [MissionManager](INFO): DefineArg Science.TimeWindowPeakReport = nan min
2020-11-25T21:19:15.103Z,1606339155.103 [MissionManager](INFO): DefineArg Science.HighestChlPeakReportActive = 0 bool
2020-11-25T21:19:15.106Z,1606339155.106 [MissionManager](INFO): DefineArg Science.PatchTracking = 0 bool
2020-11-25T21:19:15.109Z,1606339155.109 [MissionManager](INFO): DefineArg Science.FilterWidthHorizontal = 3.000000 count
2020-11-25T21:19:15.112Z,1606339155.112 [MissionManager](INFO): DefineArg Science.NumProfilesSlidingwindow = 100.000000 count
2020-11-25T21:19:15.115Z,1606339155.115 [MissionManager](INFO): DefineArg Science.OffPeakFractionHorizontal = 80.000000 %
2020-11-25T21:19:15.118Z,1606339155.118 [MissionManager](INFO): DefineArg Science.PeakDetectNO3Active = 0 bool
2020-11-25T21:19:15.121Z,1606339155.121 [MissionManager](INFO): DefineArg Science.PeakDetectOilActive = 0 bool
2020-11-25T21:19:15.124Z,1606339155.124 [MissionManager](INFO): DefineArg Science.PeakDetectFDOMActive = 0 bool
2020-11-25T21:19:15.126Z,1606339155.126 [MissionManager](INFO): DefineArg Science.UpwardDerivativeOfTemperatureActive = 0 bool
2020-11-25T21:19:15.130Z,1606339155.130 [MissionManager](INFO): DefineArg Science.EnabledAanderaaO2 = 0.000000 bool
2020-11-25T21:19:15.133Z,1606339155.133 [MissionManager](INFO): DefineArg Science.EnabledNeilBrown = 0.000000 bool
2020-11-25T21:19:15.157Z,1606339155.157 [MissionManager](INFO): DefineArg Science.EnabledSeabird = 1.000000 bool
2020-11-25T21:19:15.167Z,1606339155.167 [MissionManager](INFO): DefineArg Science.EnabledWetLabsBB2FL = 1.000000 bool
2020-11-25T21:19:15.178Z,1606339155.178 [MissionManager](INFO): DefineArg Science.EnabledWetLabsSeaOWL_UV_A = 0.000000 bool
2020-11-25T21:19:15.182Z,1606339155.182 [MissionManager](INFO): DefineArg Science.EnabledWetLabsUBAT = 1.000000 bool
2020-11-25T21:19:15.190Z,1606339155.190 [MissionManager](INFO): DefineArg Science.LowPassWindowLength = 20.000000 count
2020-11-25T21:19:15.201Z,1606339155.201 [MissionManager](INFO): DefineArg Science.MedianFilterLen = 5.000000 count
2020-11-25T21:19:15.204Z,1606339155.204 [MissionManager](INFO): DefineArg Science.PeakChlShallowBound = nan m
2020-11-25T21:19:15.219Z,1606339155.219 [MissionManager](INFO): DefineArg Science.PeakChlDeepBound = nan m
2020-11-25T21:19:15.222Z,1606339155.222 [MissionManager](INFO): DefineArg Science.PeakShallowBound = nan m
2020-11-25T21:19:15.225Z,1606339155.225 [MissionManager](INFO): DefineArg Science.PeakDeepBound = nan m
2020-11-25T21:19:15.244Z,1606339155.244 [MissionManager](INFO): DefineOutput Science.PeakChl = 0.000000 ug/l
2020-11-25T21:19:15.250Z,1606339155.250 [MissionManager](INFO): DefineOutput Science.PeakChlDepth = 0.000000 m
2020-11-25T21:19:15.253Z,1606339155.253 [MissionManager](INFO): DefineOutput Science.PeakChlTemperature = 0.000000 degC
2020-11-25T21:19:15.256Z,1606339155.256 [MissionManager](INFO): DefineOutput Science.PeakChlLatitude = nan arcdeg
2020-11-25T21:19:15.311Z,1606339155.311 [MissionManager](INFO): DefineOutput Science.PeakChlLongitude = nan arcdeg
2020-11-25T21:19:15.314Z,1606339155.314 [MissionManager](INFO): DefineOutput Science.PeakNO3 = 0.000000 umol/l
2020-11-25T21:19:15.330Z,1606339155.330 [MissionManager](INFO): DefineOutput Science.PeakNO3Depth = 0.000000 m
2020-11-25T21:19:15.341Z,1606339155.341 [MissionManager](INFO): DefineOutput Science.PeakNO3Latitude = nan arcdeg
2020-11-25T21:19:15.350Z,1606339155.350 [MissionManager](INFO): DefineOutput Science.PeakNO3Longitude = nan arcdeg
2020-11-25T21:19:15.362Z,1606339155.362 [MissionManager](INFO): DefineOutput Science.PatchChl = 0.000000 m
2020-11-25T21:19:15.370Z,1606339155.370 [MissionManager](INFO): DefineOutput Science.PatchChlDepth = 0.000000 m
2020-11-25T21:19:15.377Z,1606339155.377 [MissionManager](INFO): DefineOutput Science.PatchChlLatitude = nan arcdeg
2020-11-25T21:19:15.381Z,1606339155.381 [MissionManager](INFO): DefineOutput Science.PatchChlLongitude = nan arcdeg
2020-11-25T21:19:15.397Z,1606339155.397 [MissionManager](INFO): DefineOutput Science.PatchChlDistance = nan m
2020-11-25T21:19:15.404Z,1606339155.404 [MissionManager](INFO): DefineOutput Science.PeakOil = 0.000000 kg/m3
2020-11-25T21:19:15.413Z,1606339155.413 [MissionManager](INFO): DefineOutput Science.PeakOilDepth = 0.000000 m
2020-11-25T21:19:15.416Z,1606339155.416 [MissionManager](INFO): DefineOutput Science.PeakOilLatitude = nan arcdeg
2020-11-25T21:19:15.422Z,1606339155.422 [MissionManager](INFO): DefineOutput Science.PeakOilLongitude = nan arcdeg
2020-11-25T21:19:15.438Z,1606339155.438 [MissionManager](INFO): DefineOutput Science.PeakFDOM = 0.000000 ppb
2020-11-25T21:19:15.453Z,1606339155.453 [MissionManager](INFO): DefineOutput Science.PeakFDOMDepth = 0.000000 m
2020-11-25T21:19:15.496Z,1606339155.496 [MissionManager](INFO): DefineOutput Science.PeakFDOMLatitude = nan arcdeg
2020-11-25T21:19:15.499Z,1606339155.499 [MissionManager](INFO): DefineOutput Science.PeakFDOMLongitude = nan arcdeg
2020-11-25T21:19:15.502Z,1606339155.502 [MissionManager](INFO): DefineOutput Science.PatchFDOMDistance = nan m
2020-11-25T21:19:15.574Z,1606339155.574 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-11-25T21:19:15.601Z,1606339155.601 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](DEBUG): Construct PeakDetectHorizontal.
2020-11-25T21:19:15.634Z,1606339155.634 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-11-25T21:19:15.653Z,1606339155.653 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-11-25T21:19:15.723Z,1606339155.723 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-11-25T21:19:15.783Z,1606339155.783 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<!-- ====================
     Generated by TethysL
     ==================== -->
<Aggregate xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
           xmlns="Tethys"
           xmlns:Units="Tethys/Units"
           xmlns:Science="Tethys/Science"
           xmlns:Universal="Tethys/Universal"
           xmlns:Trigger="Tethys/Trigger"
           xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                               Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                               Tethys/Science http://okeanids.mbari.org/tethys/Xml/Science.xsd
                               Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd
                               Tethys/Trigger http://okeanids.mbari.org/tethys/Xml/Trigger.xsd"
       Id="Science">

    <DefineArg Name="PeakDetectChlActive"><Description>
        Turns on peak detection of Cholorphyll.
    </Description><False/></DefineArg>

    <DefineArg Name="TimeWindowPeakReport"><Description>
        If greater than zero, report a peak every window. If NaN or zero, this
        variable is ignored.
    </Description><Units:minute/><Value>NaN</Value></DefineArg>

    <DefineArg Name="HighestChlPeakReportActive"><Description>
        Turns on reporting of the highest peak value on yo-yo profiles in a
        horizontal sliding window (of length numProfilesSlidingwindow)
    </Description><False/></DefineArg>

    <DefineArg Name="PatchTracking"><Description>
        If tracking a patch
    </Description><False/></DefineArg>

    <DefineArg Name="FilterWidthHorizontal"><Description>
        Width of boxcar filter applied to yoyo-wise chl peaks to pick out the
        highest peak.
    </Description><Units:count/><Value>3</Value></DefineArg>

    <DefineArg Name="NumProfilesSlidingwindow"><Description>
        Length of horizontal sliding window. The highest yoyo-wise chl peak
        (after low-pass filtering by a filter of length FilterWidthHorizontal)
        within this window.
    </Description><Units:count/><Value>100</Value></DefineArg>

    <DefineArg Name="OffPeakFractionHorizontal"><Description>
        When filtered horizontal value is this fraction of the peak, consider it
        outside the patch.
    </Description><Units:percent/><Value>80</Value></DefineArg>

    <DefineArg Name="PeakDetectNO3Active"><Description>
        Turns on peak detection of Nitrate (and turns on ISUS).
    </Description><False/></DefineArg>

    <DefineArg Name="PeakDetectOilActive"><Description>
        Turns on peak detection of Dissolved Oil.
    </Description><False/></DefineArg>

    <DefineArg Name="PeakDetectFDOMActive"><Description>
        Turns on peak detection of concentration_of_chromophoric_dissolved_organic_matter_in_sea_water from FDOM sensor.
    </Description><False/></DefineArg>
    
    <DefineArg Name="UpwardDerivativeOfTemperatureActive"><Description>
        Turns on seawater temperature derivative.
    </Description><False/></DefineArg>

    <DefineArg Name="EnabledAanderaaO2"><Description>
        Automatically set to True if the Aanderaa O2 sensor is installed. Set to
        false to disable reading Aandera O2.
    </Description><Science:Aanderaa_O2.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledNeilBrown"><Description>
        Automatically set to true if the Neil Brown CTD is enabled. Set to false
        to disable reading from the Neil Brown.
    </Description><Science:CTD_NeilBrown.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledSeabird"><Description>
        Automatically set to true if the CTD is enabled. Set to false to disable
        reading from the CTD.
    </Description><Science:CTD_Seabird.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsBB2FL"><Description>
        Automatically set to true if the the WetLabs BB2FL is enabled. Set to
        false to disable the WetLabs BB2FL.
    </Description><Science:WetLabsBB2FL.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsSeaOWL_UV_A"><Description>
        Automatically set to true if the the WetLabs SeaOWL UV-A is enabled. Set
        to false to disable the WetLabs SeaOWL UV-A.
    </Description><Science:WetLabsSeaOWL_UV_A.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsUBAT"><Description>
        Automatically set to true if the the WetLabs UBAT is enabled. Set
        to false to disable the WetLabs UBAT.
    </Description><Science:WetLabsUBAT.loadAtStartup/></DefineArg>

    <DefineArg Name="LowPassWindowLength"><Description>
        Low-pass window length (based on depth sensor sampling interval 0.4
        second) for low-pass filtering.
    </Description><Units:count/><Value>20</Value></DefineArg>

    <DefineArg Name="MedianFilterLen"><Description>
        Median filter length (only for chlorophyll fluorescence which tends to have spikes)
    </Description><Units:count/><Value>5</Value></DefineArg>

    <DefineArg Name="PeakChlShallowBound"><Description>
        Shallow depth bound for detecting chl peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineArg Name="PeakChlDeepBound"><Description>
        Deep depth bound for detecting chl peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineArg Name="PeakShallowBound"><Description>
        Shallow depth bound for detecting any peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineArg Name="PeakDeepBound"><Description>
        Deep depth bound for detecting any peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineOutput Name="PeakChl"><Units:microgram_per_liter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlTemperature"><Units:celsius/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakChlLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakNO3"><Units:micromole_per_liter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Depth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Latitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Longitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChl"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PatchChlDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PatchChlLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChlLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChlDistance"><Units:meter/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakOil"><Units:kilogram_per_cubic_meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakOilDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakOilLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakOilLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakFDOM"><Units:part_per_billion/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>
    
    <DefineOutput Name="PatchFDOMDistance"><Units:meter/><Value>NaN</Value></DefineOutput>    
    
    <Parallel/>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledAanderaaO2"/>
        </While>
        <Universal:mass_concentration_of_oxygen_in_sea_water/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledNeilBrown"/>
            <Or><Arg Name="EnabledSeabird"/></Or>
        </While>
        <Universal:sea_water_temperature/>
        <Universal:sea_water_salinity/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledSeabird"/>
        </While>
        <Science:CTD_Seabird.sea_water_temperature/>
        <Science:CTD_Seabird.sea_water_salinity/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledNeilBrown"/>
            <Or><Arg Name="EnabledSeabird"/></Or>
            <And><Arg Name="UpwardDerivativeOfTemperatureActive"/></And>
        </While>
        <Universal:upward_derivative_of_sea_water_temperature/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsBB2FL"/>
            <Or><Arg Name="PeakDetectChlActive"/></Or>
        </While>
        <Universal:mass_concentration_of_chlorophyll_in_sea_water/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsUBAT"/>
        </While>
        <Science:WetLabsUBAT.biolum_potential/>
    </ReadData>

    <ReadData Id="Read_Oil" Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsSeaOWL_UV_A"/>
            <Or><Arg Name="PeakDetectOilActive"/></Or>
        </While>
        <Universal:mass_concentration_of_chlorophyll_in_sea_water/>
    </ReadData>

    <Aggregate Id="OceanCurrent">
        <Estimation:CurrentEstimator>
            <Parallel/>
        </Estimation:CurrentEstimator>	
    </Aggregate>    	

    <Aggregate Id="PeakDetectChl">

        <While>
            <Arg Name="PeakDetectChlActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mass_concentration_of_chlorophyll_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.medianFilterLength/><Arg Name="MedianFilterLen"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakChlShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakChlDeepBound"/></Setting>
            <OutputArg Name="PeakChl"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakChlDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakChlTemperature"><Trigger:PeakDetectVsDepth.peakTemperature/></OutputArg>
            <OutputArg Name="PeakChlLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakChlLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

<!--debug
        <Syslog Severity="Important">PeakChl, PeakChlLatitude, PeakChlLongitude = <Arg Name="PeakChl"/><Units:microgram_per_liter/>, <Arg Name="PeakChlLatitude"/><Units:degree/>, <Arg Name="PeakChlLongitude"/><Units:degree/></Syslog>
-->

        <SendData Service="Express"><Arg Name="PeakChl"/><Arg Name="PeakChlDepth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="HighestChlPeakReport">

        <While>
            <Arg Name="HighestChlPeakReportActive"/>
        </While>

        <Trigger:PeakDetectHorizontal>
            <Sequence/>
            <Setting><Trigger:PeakDetectHorizontal.detectFrom/><Arg Name="PeakChl"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.depthFrom/><Arg Name="PeakChlDepth"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.latitudeFrom/><Arg Name="PeakChlLatitude"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.longitudeFrom/><Arg Name="PeakChlLongitude"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.patchTracking/><Arg Name="PatchTracking"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.filterWidth/><Arg Name="FilterWidthHorizontal"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.numProfilesSlidingwindow/><Arg Name="NumProfilesSlidingwindow"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.offPeakFraction/><Arg Name="OffPeakFractionHorizontal"/></Setting>
            <OutputArg Name="PatchChl"><Trigger:PeakDetectHorizontal.peakDetect/></OutputArg>
            <OutputArg Name="PatchChlDepth"><Trigger:PeakDetectHorizontal.peakDepth/></OutputArg>
            <OutputArg Name="PatchChlLatitude"><Trigger:PeakDetectHorizontal.peakLatitude/></OutputArg>
            <OutputArg Name="PatchChlLongitude"><Trigger:PeakDetectHorizontal.peakLongitude/></OutputArg>
            <OutputArg Name="PatchChlDistance"><Trigger:PeakDetectHorizontal.peakDistance/></OutputArg>
        </Trigger:PeakDetectHorizontal>

    </Aggregate>

    <Aggregate Id="PeakDetectNO3">

        <While>
            <Arg Name="PeakDetectNO3Active"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mole_concentration_of_nitrate_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakNO3"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakNO3Depth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakNO3Latitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakNO3Longitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakNO3"/><Arg Name="PeakNO3Depth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="PeakDetectOil">

        <While>
            <Arg Name="PeakDetectOilActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mass_concentration_of_petroleum_hydrocarbons_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakOil"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakOilDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakOilLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakOilLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakOil"/><Arg Name="PeakOilDepth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="PeakDetectFDOM">

        <While>
            <Arg Name="PeakDetectFDOMActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:concentration_of_chromophoric_dissolved_organic_matter_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakFDOM"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakFDOMDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakFDOMTemperature"><Trigger:PeakDetectVsDepth.peakTemperature/></OutputArg>
            <OutputArg Name="PeakFDOMLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakFDOMLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakFDOM"/><Arg Name="PeakFDOMDepth"/>
        </SendData>

    </Aggregate>

</Aggregate>


2020-11-25T21:19:15.786Z,1606339155.786 [CommandLine](IMPORTANT): Running ./Missions/Insert/Science.xml
2020-11-25T21:19:16.112Z,1606339156.112 [Default] Stopped
2020-11-25T21:19:16.112Z,1606339156.112 [Default](DEBUG): Aggregate::uninitialize Default
2020-11-25T21:19:16.112Z,1606339156.112 [Default:B.GoToSurface] Stopped
2020-11-25T21:19:16.112Z,1606339156.112 [Default:B.GoToSurface](DEBUG): Uninitialize GoToSurfaceComponent.
2020-11-25T21:19:16.112Z,1606339156.112 [Default:CheckIn] Stopped
2020-11-25T21:19:16.112Z,1606339156.112 [Default:CheckIn](DEBUG): Aggregate::uninitialize Default:CheckIn
2020-11-25T21:19:16.112Z,1606339156.112 [Default:CheckIn:Read_GPS] Stopped
2020-11-25T21:19:16.112Z,1606339156.112 [MissionManager](IMPORTANT): Started mission Science
2020-11-25T21:19:16.112Z,1606339156.112 [Science] Running Loop=1
2020-11-25T21:19:16.113Z,1606339156.113 [Science](DEBUG): Aggregate::initialize Science
2020-11-25T21:19:16.113Z,1606339156.113 [Science:A] Running Loop=1
2020-11-25T21:19:16.113Z,1606339156.113 [Science:B] Running Loop=1
2020-11-25T21:19:16.113Z,1606339156.113 [Science:C] Running Loop=1
2020-11-25T21:19:16.113Z,1606339156.113 [Science:D] Running Loop=1
2020-11-25T21:19:16.113Z,1606339156.113 [Science:E] Running Loop=1
2020-11-25T21:19:16.113Z,1606339156.113 [Science:F] Running Loop=1
2020-11-25T21:19:16.113Z,1606339156.113 [Science:Read_Oil] Running Loop=1
2020-11-25T21:19:16.113Z,1606339156.113 [Science:PeakDetectChl] Running Loop=1
2020-11-25T21:19:16.113Z,1606339156.113 [Science:PeakDetectChl](DEBUG): Aggregate::initialize Science:PeakDetectChl
2020-11-25T21:19:16.113Z,1606339156.113 [Science:PeakDetectChl:A.PeakDetectVsDepth] Running Loop=1
2020-11-25T21:19:16.113Z,1606339156.113 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-11-25T21:19:16.123Z,1606339156.123 [Science:HighestChlPeakReport] Running Loop=1
2020-11-25T21:19:16.123Z,1606339156.123 [Science:HighestChlPeakReport](DEBUG): Aggregate::initialize Science:HighestChlPeakReport
2020-11-25T21:19:16.124Z,1606339156.124 [Science:HighestChlPeakReport:A.PeakDetectHorizontal] Running Loop=1
2020-11-25T21:19:16.124Z,1606339156.124 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](INFO): Initialize.
2020-11-25T21:19:16.124Z,1606339156.124 [Science:PeakDetectNO3] Running Loop=1
2020-11-25T21:19:16.124Z,1606339156.124 [Science:PeakDetectNO3](DEBUG): Aggregate::initialize Science:PeakDetectNO3
2020-11-25T21:19:16.124Z,1606339156.124 [Science:PeakDetectNO3:A.PeakDetectVsDepth] Running Loop=1
2020-11-25T21:19:16.124Z,1606339156.124 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-11-25T21:19:16.126Z,1606339156.126 [Science:PeakDetectOil] Running Loop=1
2020-11-25T21:19:16.126Z,1606339156.126 [Science:PeakDetectOil](DEBUG): Aggregate::initialize Science:PeakDetectOil
2020-11-25T21:19:16.126Z,1606339156.126 [Science:PeakDetectOil:A.PeakDetectVsDepth] Running Loop=1
2020-11-25T21:19:16.126Z,1606339156.126 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-11-25T21:19:16.128Z,1606339156.128 [Science:PeakDetectFDOM] Running Loop=1
2020-11-25T21:19:16.128Z,1606339156.128 [Science:PeakDetectFDOM](DEBUG): Aggregate::initialize Science:PeakDetectFDOM
2020-11-25T21:19:16.129Z,1606339156.129 [Science:PeakDetectFDOM:A.PeakDetectVsDepth] Running Loop=1
2020-11-25T21:19:16.129Z,1606339156.129 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-11-25T21:19:16.131Z,1606339156.131 [Science:OceanCurrent] Running Loop=1
2020-11-25T21:19:16.131Z,1606339156.131 [Science:OceanCurrent](DEBUG): Aggregate::initialize Science:OceanCurrent
2020-11-25T21:19:16.131Z,1606339156.131 [Science:OceanCurrent:A.] Running Loop=1
2020-11-25T21:19:16.131Z,1606339156.131 [Science:OceanCurrent:A.](INFO): Initializing CurrentEstimator.
2020-11-25T21:19:16.132Z,1606339156.132 [Science:PeakDetectFDOM] Stopped
2020-11-25T21:19:16.132Z,1606339156.132 [Science:PeakDetectFDOM](DEBUG): Aggregate::uninitialize Science:PeakDetectFDOM
2020-11-25T21:19:16.132Z,1606339156.132 [Science:PeakDetectFDOM:A.PeakDetectVsDepth] Stopped
2020-11-25T21:19:16.132Z,1606339156.132 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-11-25T21:19:16.133Z,1606339156.133 [Science:PeakDetectOil] Stopped
2020-11-25T21:19:16.133Z,1606339156.133 [Science:PeakDetectOil](DEBUG): Aggregate::uninitialize Science:PeakDetectOil
2020-11-25T21:19:16.133Z,1606339156.133 [Science:PeakDetectOil:A.PeakDetectVsDepth] Stopped
2020-11-25T21:19:16.133Z,1606339156.133 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-11-25T21:19:16.133Z,1606339156.133 [Science:PeakDetectNO3] Stopped
2020-11-25T21:19:16.133Z,1606339156.133 [Science:PeakDetectNO3](DEBUG): Aggregate::uninitialize Science:PeakDetectNO3
2020-11-25T21:19:16.133Z,1606339156.133 [Science:PeakDetectNO3:A.PeakDetectVsDepth] Stopped
2020-11-25T21:19:16.133Z,1606339156.133 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-11-25T21:19:16.133Z,1606339156.133 [Science:HighestChlPeakReport] Stopped
2020-11-25T21:19:16.133Z,1606339156.133 [Science:HighestChlPeakReport](DEBUG): Aggregate::uninitialize Science:HighestChlPeakReport
2020-11-25T21:19:16.133Z,1606339156.133 [Science:HighestChlPeakReport:A.PeakDetectHorizontal] Stopped
2020-11-25T21:19:16.133Z,1606339156.133 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](DEBUG): Uninitialize.
2020-11-25T21:19:16.133Z,1606339156.133 [Science:PeakDetectChl] Stopped
2020-11-25T21:19:16.134Z,1606339156.134 [Science:PeakDetectChl](DEBUG): Aggregate::uninitialize Science:PeakDetectChl
2020-11-25T21:19:16.134Z,1606339156.134 [Science:PeakDetectChl:A.PeakDetectVsDepth] Stopped
2020-11-25T21:19:16.134Z,1606339156.134 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-11-25T21:19:16.134Z,1606339156.134 [Science:OceanCurrent:A.] Running Loop=1
2020-11-25T21:19:16.134Z,1606339156.134 [Science:Read_Oil] Stopped
2020-11-25T21:19:16.134Z,1606339156.134 [Science:F] Running Loop=1
2020-11-25T21:19:16.135Z,1606339156.135 [Science:F](DEBUG): Initialize ReadDataComponent to sense WetLabsUBAT.biolum_potential
2020-11-25T21:19:16.143Z,1606339156.143 [Science:E] Running Loop=1
2020-11-25T21:19:16.144Z,1606339156.144 [Science:E](DEBUG): Initialize ReadDataComponent to sense mass_concentration_of_chlorophyll_in_sea_water
2020-11-25T21:19:16.144Z,1606339156.144 [Science:D] Stopped
2020-11-25T21:19:16.144Z,1606339156.144 [Science:C] Running Loop=1
2020-11-25T21:19:16.144Z,1606339156.144 [Science:C](DEBUG): Initialize ReadDataComponent to sense CTD_Seabird.sea_water_temperature
2020-11-25T21:19:16.145Z,1606339156.145 [Science:C](DEBUG): Initialize ReadDataComponent to sense CTD_Seabird.sea_water_salinity
2020-11-25T21:19:16.145Z,1606339156.145 [Science:B] Running Loop=1
2020-11-25T21:19:16.146Z,1606339156.146 [Science:B](DEBUG): Initialize ReadDataComponent to sense sea_water_temperature
2020-11-25T21:19:16.146Z,1606339156.146 [Science:B](DEBUG): Initialize ReadDataComponent to sense sea_water_salinity
2020-11-25T21:19:16.146Z,1606339156.146 [Science:A] Stopped
2020-11-25T21:19:16.260Z,1606339156.260 [WetLabsBB2FL](INFO): Powering up
2020-11-25T21:19:16.623Z,1606339156.623 [WetLabsUBAT](INFO): Initializing
2020-11-25T21:19:16.625Z,1606339156.625 [WetLabsUBAT](INFO): readConfig(): serialNo_: UBAT0051, uartName_: /dev/ttyC1, optionalArgs_: 
2020-11-25T21:19:16.625Z,1606339156.625 [WetLabsUBAT](INFO): Powering up
2020-11-25T21:19:16.625Z,1606339156.625 [WetLabsUBAT](INFO): Checking LCM
2020-11-25T21:19:16.626Z,1606339156.626 [WetLabsUBAT](INFO): LCM OK
2020-11-25T21:19:16.630Z,1606339156.630 [WetLabsUBAT](INFO): setup() - setLineFormat()
2020-11-25T21:19:19.676Z,1606339159.676 [CTD_Seabird](ERROR): Failed to parse device response: <!--startlogging-->
2020-11-25T21:19:26.930Z,1606339166.930 [WetLabsUBAT](INFO): Got instrument prompt
2020-11-25T21:19:29.073Z,1606339169.073 [WetLabsUBAT](INFO): Got instrument prompt
2020-11-25T21:19:30.139Z,1606339170.139 [WetLabsUBAT..StreamSerialDriver](INFO): device metadata:
Override SerialDriver::getDeviceMetadata()
2020-11-25T21:19:48.642Z,1606339188.642 [CommandLine](IMPORTANT): got command stop
2020-11-25T21:19:48.642Z,1606339188.642 [CommandLine](IMPORTANT): Scheduling is paused
2020-11-25T21:19:48.645Z,1606339188.645 [Supervisor](INFO): Stop Mission called by CommandLine::commandStop
2020-11-25T21:19:48.906Z,1606339188.906 [MissionManager](INFO): MissionManager is completed.
2020-11-25T21:19:48.906Z,1606339188.906 [MissionManager](INFO): Uninitializing Mission Science
2020-11-25T21:19:48.906Z,1606339188.906 [Science] Stopped
2020-11-25T21:19:48.906Z,1606339188.906 [Science](DEBUG): Aggregate::uninitialize Science
2020-11-25T21:19:48.906Z,1606339188.906 [Science:B] Stopped
2020-11-25T21:19:48.906Z,1606339188.906 [Science:C] Stopped
2020-11-25T21:19:48.906Z,1606339188.906 [Science:E] Stopped
2020-11-25T21:19:48.906Z,1606339188.906 [Science:F] Stopped
2020-11-25T21:19:48.906Z,1606339188.906 [Science:OceanCurrent] Stopped
2020-11-25T21:19:48.907Z,1606339188.907 [Science:OceanCurrent](DEBUG): Aggregate::uninitialize Science:OceanCurrent
2020-11-25T21:19:48.907Z,1606339188.907 [Science:OceanCurrent:A.] Stopped
2020-11-25T21:19:49.111Z,1606339189.111 [WetLabsBB2FL](INFO): Powering down
2020-11-25T21:19:49.277Z,1606339189.277 [MissionManager](IMPORTANT): Started mission Default
2020-11-25T21:19:49.277Z,1606339189.277 [Default] Running Loop=1
2020-11-25T21:19:49.277Z,1606339189.277 [Default](DEBUG): Aggregate::initialize Default
2020-11-25T21:19:49.277Z,1606339189.277 [Default:B.GoToSurface] Running Loop=1
2020-11-25T21:19:49.278Z,1606339189.278 [Default:B.GoToSurface](DEBUG): Initialize GoToSurfaceComponent.
2020-11-25T21:19:49.278Z,1606339189.278 [Default:B.GoToSurface](DEBUG): No depth rate setting specified. Using default value of nan m/s.
2020-11-25T21:19:49.278Z,1606339189.278 [Default:B.GoToSurface](DEBUG): No pitch setting specified. Using default value of nan degrees.
2020-11-25T21:19:49.278Z,1606339189.278 [Default:B.GoToSurface](DEBUG): No speed setting specified. Using default value of 1.000000 m/s.
2020-11-25T21:19:49.279Z,1606339189.279 [Default:B.GoToSurface](DEBUG): No surface timeout specified. Using default value of 1000.000000 seconds.
2020-11-25T21:19:49.283Z,1606339189.283 [Default:B.GoToSurface](INFO): Received pitch timeout configuration 60.000000 seconds.
2020-11-25T21:19:49.284Z,1606339189.284 [Default:A.Wait] Running Loop=1
2020-11-25T21:19:49.284Z,1606339189.284 [Default:A.Wait](DEBUG): Initialize Wait Component.
2020-11-25T21:19:49.879Z,1606339189.879 [WetLabsUBAT](INFO): Powering down
2020-11-25T21:19:58.249Z,1606339198.249 [CommandLine](IMPORTANT): got command ubat off
2020-11-25T21:19:58.249Z,1606339198.249 [CommandLine](IMPORTANT): Disabling UBAT.
2020-11-25T21:20:02.631Z,1606339202.631 [Default:A.Wait](INFO): Done Waiting.
2020-11-25T21:20:02.631Z,1606339202.631 [Default:A.Wait] Stopped
2020-11-25T21:20:02.651Z,1606339202.651 [Default:A.Wait](DEBUG): Uninitialize Wait Component.
2020-11-25T21:20:02.976Z,1606339202.976 [Default:CheckIn] Running Loop=1
2020-11-25T21:20:02.977Z,1606339202.977 [Default:CheckIn](DEBUG): Aggregate::initialize Default:CheckIn
2020-11-25T21:20:02.977Z,1606339202.977 [Default:CheckIn:Read_GPS] Running Loop=1
2020-11-25T21:20:05.473Z,1606339205.473 [CommandLine](IMPORTANT): got command run ./Missions/Insert/Science.xml
2020-11-25T21:20:05.473Z,1606339205.473 [MissionManager](INFO): Loading Mission: ./Missions/Insert/Science.xml
2020-11-25T21:20:05.624Z,1606339205.624 [MissionManager](INFO): DefineArg Science.PeakDetectChlActive = 0 bool
2020-11-25T21:20:05.626Z,1606339205.626 [MissionManager](INFO): DefineArg Science.TimeWindowPeakReport = nan min
2020-11-25T21:20:05.627Z,1606339205.627 [MissionManager](INFO): DefineArg Science.HighestChlPeakReportActive = 0 bool
2020-11-25T21:20:05.629Z,1606339205.629 [MissionManager](INFO): DefineArg Science.PatchTracking = 0 bool
2020-11-25T21:20:05.631Z,1606339205.631 [MissionManager](INFO): DefineArg Science.FilterWidthHorizontal = 3.000000 count
2020-11-25T21:20:05.633Z,1606339205.633 [MissionManager](INFO): DefineArg Science.NumProfilesSlidingwindow = 100.000000 count
2020-11-25T21:20:05.635Z,1606339205.635 [MissionManager](INFO): DefineArg Science.OffPeakFractionHorizontal = 80.000000 %
2020-11-25T21:20:05.637Z,1606339205.637 [MissionManager](INFO): DefineArg Science.PeakDetectNO3Active = 0 bool
2020-11-25T21:20:05.639Z,1606339205.639 [MissionManager](INFO): DefineArg Science.PeakDetectOilActive = 0 bool
2020-11-25T21:20:05.640Z,1606339205.640 [MissionManager](INFO): DefineArg Science.PeakDetectFDOMActive = 0 bool
2020-11-25T21:20:05.642Z,1606339205.642 [MissionManager](INFO): DefineArg Science.UpwardDerivativeOfTemperatureActive = 0 bool
2020-11-25T21:20:05.645Z,1606339205.645 [MissionManager](INFO): DefineArg Science.EnabledAanderaaO2 = 0.000000 bool
2020-11-25T21:20:05.647Z,1606339205.647 [MissionManager](INFO): DefineArg Science.EnabledNeilBrown = 0.000000 bool
2020-11-25T21:20:05.649Z,1606339205.649 [MissionManager](INFO): DefineArg Science.EnabledSeabird = 1.000000 bool
2020-11-25T21:20:05.652Z,1606339205.652 [MissionManager](INFO): DefineArg Science.EnabledWetLabsBB2FL = 1.000000 bool
2020-11-25T21:20:05.654Z,1606339205.654 [MissionManager](INFO): DefineArg Science.EnabledWetLabsSeaOWL_UV_A = 0.000000 bool
2020-11-25T21:20:05.657Z,1606339205.657 [MissionManager](INFO): DefineArg Science.EnabledWetLabsUBAT = 1.000000 bool
2020-11-25T21:20:05.660Z,1606339205.660 [MissionManager](INFO): DefineArg Science.LowPassWindowLength = 20.000000 count
2020-11-25T21:20:05.662Z,1606339205.662 [MissionManager](INFO): DefineArg Science.MedianFilterLen = 5.000000 count
2020-11-25T21:20:05.692Z,1606339205.692 [MissionManager](INFO): DefineArg Science.PeakChlShallowBound = nan m
2020-11-25T21:20:05.694Z,1606339205.694 [MissionManager](INFO): DefineArg Science.PeakChlDeepBound = nan m
2020-11-25T21:20:05.696Z,1606339205.696 [MissionManager](INFO): DefineArg Science.PeakShallowBound = nan m
2020-11-25T21:20:05.698Z,1606339205.698 [MissionManager](INFO): DefineArg Science.PeakDeepBound = nan m
2020-11-25T21:20:05.700Z,1606339205.700 [MissionManager](INFO): DefineOutput Science.PeakChl = 0.000000 ug/l
2020-11-25T21:20:05.702Z,1606339205.702 [MissionManager](INFO): DefineOutput Science.PeakChlDepth = 0.000000 m
2020-11-25T21:20:05.704Z,1606339205.704 [MissionManager](INFO): DefineOutput Science.PeakChlTemperature = 0.000000 degC
2020-11-25T21:20:05.706Z,1606339205.706 [MissionManager](INFO): DefineOutput Science.PeakChlLatitude = nan arcdeg
2020-11-25T21:20:05.708Z,1606339205.708 [MissionManager](INFO): DefineOutput Science.PeakChlLongitude = nan arcdeg
2020-11-25T21:20:05.710Z,1606339205.710 [MissionManager](INFO): DefineOutput Science.PeakNO3 = 0.000000 umol/l
2020-11-25T21:20:05.729Z,1606339205.729 [MissionManager](INFO): DefineOutput Science.PeakNO3Depth = 0.000000 m
2020-11-25T21:20:05.731Z,1606339205.731 [MissionManager](INFO): DefineOutput Science.PeakNO3Latitude = nan arcdeg
2020-11-25T21:20:05.745Z,1606339205.745 [MissionManager](INFO): DefineOutput Science.PeakNO3Longitude = nan arcdeg
2020-11-25T21:20:05.747Z,1606339205.747 [MissionManager](INFO): DefineOutput Science.PatchChl = 0.000000 m
2020-11-25T21:20:05.749Z,1606339205.749 [MissionManager](INFO): DefineOutput Science.PatchChlDepth = 0.000000 m
2020-11-25T21:20:05.751Z,1606339205.751 [MissionManager](INFO): DefineOutput Science.PatchChlLatitude = nan arcdeg
2020-11-25T21:20:05.753Z,1606339205.753 [MissionManager](INFO): DefineOutput Science.PatchChlLongitude = nan arcdeg
2020-11-25T21:20:05.767Z,1606339205.767 [MissionManager](INFO): DefineOutput Science.PatchChlDistance = nan m
2020-11-25T21:20:05.769Z,1606339205.769 [MissionManager](INFO): DefineOutput Science.PeakOil = 0.000000 kg/m3
2020-11-25T21:20:05.789Z,1606339205.789 [MissionManager](INFO): DefineOutput Science.PeakOilDepth = 0.000000 m
2020-11-25T21:20:05.791Z,1606339205.791 [MissionManager](INFO): DefineOutput Science.PeakOilLatitude = nan arcdeg
2020-11-25T21:20:05.793Z,1606339205.793 [MissionManager](INFO): DefineOutput Science.PeakOilLongitude = nan arcdeg
2020-11-25T21:20:05.812Z,1606339205.812 [MissionManager](INFO): DefineOutput Science.PeakFDOM = 0.000000 ppb
2020-11-25T21:20:05.814Z,1606339205.814 [MissionManager](INFO): DefineOutput Science.PeakFDOMDepth = 0.000000 m
2020-11-25T21:20:05.817Z,1606339205.817 [MissionManager](INFO): DefineOutput Science.PeakFDOMLatitude = nan arcdeg
2020-11-25T21:20:05.836Z,1606339205.836 [MissionManager](INFO): DefineOutput Science.PeakFDOMLongitude = nan arcdeg
2020-11-25T21:20:05.838Z,1606339205.838 [MissionManager](INFO): DefineOutput Science.PatchFDOMDistance = nan m
2020-11-25T21:20:05.915Z,1606339205.915 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-11-25T21:20:05.949Z,1606339205.949 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](DEBUG): Construct PeakDetectHorizontal.
2020-11-25T21:20:06.011Z,1606339206.011 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-11-25T21:20:06.028Z,1606339206.028 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-11-25T21:20:06.045Z,1606339206.045 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-11-25T21:20:06.093Z,1606339206.093 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<!-- ====================
     Generated by TethysL
     ==================== -->
<Aggregate xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
           xmlns="Tethys"
           xmlns:Units="Tethys/Units"
           xmlns:Science="Tethys/Science"
           xmlns:Universal="Tethys/Universal"
           xmlns:Trigger="Tethys/Trigger"
           xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                               Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                               Tethys/Science http://okeanids.mbari.org/tethys/Xml/Science.xsd
                               Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd
                               Tethys/Trigger http://okeanids.mbari.org/tethys/Xml/Trigger.xsd"
       Id="Science">

    <DefineArg Name="PeakDetectChlActive"><Description>
        Turns on peak detection of Cholorphyll.
    </Description><False/></DefineArg>

    <DefineArg Name="TimeWindowPeakReport"><Description>
        If greater than zero, report a peak every window. If NaN or zero, this
        variable is ignored.
    </Description><Units:minute/><Value>NaN</Value></DefineArg>

    <DefineArg Name="HighestChlPeakReportActive"><Description>
        Turns on reporting of the highest peak value on yo-yo profiles in a
        horizontal sliding window (of length numProfilesSlidingwindow)
    </Description><False/></DefineArg>

    <DefineArg Name="PatchTracking"><Description>
        If tracking a patch
    </Description><False/></DefineArg>

    <DefineArg Name="FilterWidthHorizontal"><Description>
        Width of boxcar filter applied to yoyo-wise chl peaks to pick out the
        highest peak.
    </Description><Units:count/><Value>3</Value></DefineArg>

    <DefineArg Name="NumProfilesSlidingwindow"><Description>
        Length of horizontal sliding window. The highest yoyo-wise chl peak
        (after low-pass filtering by a filter of length FilterWidthHorizontal)
        within this window.
    </Description><Units:count/><Value>100</Value></DefineArg>

    <DefineArg Name="OffPeakFractionHorizontal"><Description>
        When filtered horizontal value is this fraction of the peak, consider it
        outside the patch.
    </Description><Units:percent/><Value>80</Value></DefineArg>

    <DefineArg Name="PeakDetectNO3Active"><Description>
        Turns on peak detection of Nitrate (and turns on ISUS).
    </Description><False/></DefineArg>

    <DefineArg Name="PeakDetectOilActive"><Description>
        Turns on peak detection of Dissolved Oil.
    </Description><False/></DefineArg>

    <DefineArg Name="PeakDetectFDOMActive"><Description>
        Turns on peak detection of concentration_of_chromophoric_dissolved_organic_matter_in_sea_water from FDOM sensor.
    </Description><False/></DefineArg>
    
    <DefineArg Name="UpwardDerivativeOfTemperatureActive"><Description>
        Turns on seawater temperature derivative.
    </Description><False/></DefineArg>

    <DefineArg Name="EnabledAanderaaO2"><Description>
        Automatically set to True if the Aanderaa O2 sensor is installed. Set to
        false to disable reading Aandera O2.
    </Description><Science:Aanderaa_O2.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledNeilBrown"><Description>
        Automatically set to true if the Neil Brown CTD is enabled. Set to false
        to disable reading from the Neil Brown.
    </Description><Science:CTD_NeilBrown.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledSeabird"><Description>
        Automatically set to true if the CTD is enabled. Set to false to disable
        reading from the CTD.
    </Description><Science:CTD_Seabird.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsBB2FL"><Description>
        Automatically set to true if the the WetLabs BB2FL is enabled. Set to
        false to disable the WetLabs BB2FL.
    </Description><Science:WetLabsBB2FL.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsSeaOWL_UV_A"><Description>
        Automatically set to true if the the WetLabs SeaOWL UV-A is enabled. Set
        to false to disable the WetLabs SeaOWL UV-A.
    </Description><Science:WetLabsSeaOWL_UV_A.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsUBAT"><Description>
        Automatically set to true if the the WetLabs UBAT is enabled. Set
        to false to disable the WetLabs UBAT.
    </Description><Science:WetLabsUBAT.loadAtStartup/></DefineArg>

    <DefineArg Name="LowPassWindowLength"><Description>
        Low-pass window length (based on depth sensor sampling interval 0.4
        second) for low-pass filtering.
    </Description><Units:count/><Value>20</Value></DefineArg>

    <DefineArg Name="MedianFilterLen"><Description>
        Median filter length (only for chlorophyll fluorescence which tends to have spikes)
    </Description><Units:count/><Value>5</Value></DefineArg>

    <DefineArg Name="PeakChlShallowBound"><Description>
        Shallow depth bound for detecting chl peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineArg Name="PeakChlDeepBound"><Description>
        Deep depth bound for detecting chl peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineArg Name="PeakShallowBound"><Description>
        Shallow depth bound for detecting any peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineArg Name="PeakDeepBound"><Description>
        Deep depth bound for detecting any peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineOutput Name="PeakChl"><Units:microgram_per_liter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlTemperature"><Units:celsius/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakChlLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakNO3"><Units:micromole_per_liter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Depth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Latitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Longitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChl"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PatchChlDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PatchChlLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChlLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChlDistance"><Units:meter/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakOil"><Units:kilogram_per_cubic_meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakOilDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakOilLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakOilLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakFDOM"><Units:part_per_billion/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>
    
    <DefineOutput Name="PatchFDOMDistance"><Units:meter/><Value>NaN</Value></DefineOutput>    
    
    <Parallel/>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledAanderaaO2"/>
        </While>
        <Universal:mass_concentration_of_oxygen_in_sea_water/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledNeilBrown"/>
            <Or><Arg Name="EnabledSeabird"/></Or>
        </While>
        <Universal:sea_water_temperature/>
        <Universal:sea_water_salinity/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledSeabird"/>
        </While>
        <Science:CTD_Seabird.sea_water_temperature/>
        <Science:CTD_Seabird.sea_water_salinity/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledNeilBrown"/>
            <Or><Arg Name="EnabledSeabird"/></Or>
            <And><Arg Name="UpwardDerivativeOfTemperatureActive"/></And>
        </While>
        <Universal:upward_derivative_of_sea_water_temperature/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsBB2FL"/>
            <Or><Arg Name="PeakDetectChlActive"/></Or>
        </While>
        <Universal:mass_concentration_of_chlorophyll_in_sea_water/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsUBAT"/>
        </While>
        <Science:WetLabsUBAT.biolum_potential/>
    </ReadData>

    <ReadData Id="Read_Oil" Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsSeaOWL_UV_A"/>
            <Or><Arg Name="PeakDetectOilActive"/></Or>
        </While>
        <Universal:mass_concentration_of_chlorophyll_in_sea_water/>
    </ReadData>

    <Aggregate Id="OceanCurrent">
        <Estimation:CurrentEstimator>
            <Parallel/>
        </Estimation:CurrentEstimator>	
    </Aggregate>    	

    <Aggregate Id="PeakDetectChl">

        <While>
            <Arg Name="PeakDetectChlActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mass_concentration_of_chlorophyll_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.medianFilterLength/><Arg Name="MedianFilterLen"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakChlShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakChlDeepBound"/></Setting>
            <OutputArg Name="PeakChl"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakChlDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakChlTemperature"><Trigger:PeakDetectVsDepth.peakTemperature/></OutputArg>
            <OutputArg Name="PeakChlLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakChlLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

<!--debug
        <Syslog Severity="Important">PeakChl, PeakChlLatitude, PeakChlLongitude = <Arg Name="PeakChl"/><Units:microgram_per_liter/>, <Arg Name="PeakChlLatitude"/><Units:degree/>, <Arg Name="PeakChlLongitude"/><Units:degree/></Syslog>
-->

        <SendData Service="Express"><Arg Name="PeakChl"/><Arg Name="PeakChlDepth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="HighestChlPeakReport">

        <While>
            <Arg Name="HighestChlPeakReportActive"/>
        </While>

        <Trigger:PeakDetectHorizontal>
            <Sequence/>
            <Setting><Trigger:PeakDetectHorizontal.detectFrom/><Arg Name="PeakChl"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.depthFrom/><Arg Name="PeakChlDepth"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.latitudeFrom/><Arg Name="PeakChlLatitude"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.longitudeFrom/><Arg Name="PeakChlLongitude"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.patchTracking/><Arg Name="PatchTracking"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.filterWidth/><Arg Name="FilterWidthHorizontal"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.numProfilesSlidingwindow/><Arg Name="NumProfilesSlidingwindow"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.offPeakFraction/><Arg Name="OffPeakFractionHorizontal"/></Setting>
            <OutputArg Name="PatchChl"><Trigger:PeakDetectHorizontal.peakDetect/></OutputArg>
            <OutputArg Name="PatchChlDepth"><Trigger:PeakDetectHorizontal.peakDepth/></OutputArg>
            <OutputArg Name="PatchChlLatitude"><Trigger:PeakDetectHorizontal.peakLatitude/></OutputArg>
            <OutputArg Name="PatchChlLongitude"><Trigger:PeakDetectHorizontal.peakLongitude/></OutputArg>
            <OutputArg Name="PatchChlDistance"><Trigger:PeakDetectHorizontal.peakDistance/></OutputArg>
        </Trigger:PeakDetectHorizontal>

    </Aggregate>

    <Aggregate Id="PeakDetectNO3">

        <While>
            <Arg Name="PeakDetectNO3Active"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mole_concentration_of_nitrate_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakNO3"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakNO3Depth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakNO3Latitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakNO3Longitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakNO3"/><Arg Name="PeakNO3Depth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="PeakDetectOil">

        <While>
            <Arg Name="PeakDetectOilActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mass_concentration_of_petroleum_hydrocarbons_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakOil"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakOilDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakOilLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakOilLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakOil"/><Arg Name="PeakOilDepth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="PeakDetectFDOM">

        <While>
            <Arg Name="PeakDetectFDOMActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:concentration_of_chromophoric_dissolved_organic_matter_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakFDOM"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakFDOMDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakFDOMTemperature"><Trigger:PeakDetectVsDepth.peakTemperature/></OutputArg>
            <OutputArg Name="PeakFDOMLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakFDOMLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakFDOM"/><Arg Name="PeakFDOMDepth"/>
        </SendData>

    </Aggregate>

</Aggregate>


2020-11-25T21:20:06.099Z,1606339206.099 [CommandLine](IMPORTANT): Running ./Missions/Insert/Science.xml
2020-11-25T21:20:06.212Z,1606339206.212 [Default] Stopped
2020-11-25T21:20:06.213Z,1606339206.213 [Default](DEBUG): Aggregate::uninitialize Default
2020-11-25T21:20:06.213Z,1606339206.213 [Default:B.GoToSurface] Stopped
2020-11-25T21:20:06.213Z,1606339206.213 [Default:B.GoToSurface](DEBUG): Uninitialize GoToSurfaceComponent.
2020-11-25T21:20:06.213Z,1606339206.213 [Default:CheckIn] Stopped
2020-11-25T21:20:06.213Z,1606339206.213 [Default:CheckIn](DEBUG): Aggregate::uninitialize Default:CheckIn
2020-11-25T21:20:06.213Z,1606339206.213 [Default:CheckIn:Read_GPS] Stopped
2020-11-25T21:20:06.213Z,1606339206.213 [MissionManager](IMPORTANT): Started mission Science
2020-11-25T21:20:06.213Z,1606339206.213 [Science] Running Loop=1
2020-11-25T21:20:06.213Z,1606339206.213 [Science](DEBUG): Aggregate::initialize Science
2020-11-25T21:20:06.213Z,1606339206.213 [Science:A] Running Loop=1
2020-11-25T21:20:06.214Z,1606339206.214 [Science:B] Running Loop=1
2020-11-25T21:20:06.214Z,1606339206.214 [Science:C] Running Loop=1
2020-11-25T21:20:06.214Z,1606339206.214 [Science:D] Running Loop=1
2020-11-25T21:20:06.214Z,1606339206.214 [Science:E] Running Loop=1
2020-11-25T21:20:06.214Z,1606339206.214 [Science:F] Running Loop=1
2020-11-25T21:20:06.214Z,1606339206.214 [Science:Read_Oil] Running Loop=1
2020-11-25T21:20:06.214Z,1606339206.214 [Science:PeakDetectChl] Running Loop=1
2020-11-25T21:20:06.214Z,1606339206.214 [Science:PeakDetectChl](DEBUG): Aggregate::initialize Science:PeakDetectChl
2020-11-25T21:20:06.214Z,1606339206.214 [Science:PeakDetectChl:A.PeakDetectVsDepth] Running Loop=1
2020-11-25T21:20:06.214Z,1606339206.214 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-11-25T21:20:06.216Z,1606339206.216 [Science:HighestChlPeakReport] Running Loop=1
2020-11-25T21:20:06.216Z,1606339206.216 [Science:HighestChlPeakReport](DEBUG): Aggregate::initialize Science:HighestChlPeakReport
2020-11-25T21:20:06.216Z,1606339206.216 [Science:HighestChlPeakReport:A.PeakDetectHorizontal] Running Loop=1
2020-11-25T21:20:06.216Z,1606339206.216 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](INFO): Initialize.
2020-11-25T21:20:06.216Z,1606339206.216 [Science:PeakDetectNO3] Running Loop=1
2020-11-25T21:20:06.217Z,1606339206.217 [Science:PeakDetectNO3](DEBUG): Aggregate::initialize Science:PeakDetectNO3
2020-11-25T21:20:06.217Z,1606339206.217 [Science:PeakDetectNO3:A.PeakDetectVsDepth] Running Loop=1
2020-11-25T21:20:06.217Z,1606339206.217 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-11-25T21:20:06.218Z,1606339206.218 [Science:PeakDetectOil] Running Loop=1
2020-11-25T21:20:06.218Z,1606339206.218 [Science:PeakDetectOil](DEBUG): Aggregate::initialize Science:PeakDetectOil
2020-11-25T21:20:06.218Z,1606339206.218 [Science:PeakDetectOil:A.PeakDetectVsDepth] Running Loop=1
2020-11-25T21:20:06.218Z,1606339206.218 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-11-25T21:20:06.219Z,1606339206.219 [Science:PeakDetectFDOM] Running Loop=1
2020-11-25T21:20:06.219Z,1606339206.219 [Science:PeakDetectFDOM](DEBUG): Aggregate::initialize Science:PeakDetectFDOM
2020-11-25T21:20:06.220Z,1606339206.220 [Science:PeakDetectFDOM:A.PeakDetectVsDepth] Running Loop=1
2020-11-25T21:20:06.220Z,1606339206.220 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-11-25T21:20:06.221Z,1606339206.221 [Science:OceanCurrent] Running Loop=1
2020-11-25T21:20:06.221Z,1606339206.221 [Science:OceanCurrent](DEBUG): Aggregate::initialize Science:OceanCurrent
2020-11-25T21:20:06.221Z,1606339206.221 [Science:OceanCurrent:A.] Running Loop=1
2020-11-25T21:20:06.221Z,1606339206.221 [Science:OceanCurrent:A.](INFO): Initializing CurrentEstimator.
2020-11-25T21:20:06.222Z,1606339206.222 [Science:PeakDetectFDOM] Stopped
2020-11-25T21:20:06.222Z,1606339206.222 [Science:PeakDetectFDOM](DEBUG): Aggregate::uninitialize Science:PeakDetectFDOM
2020-11-25T21:20:06.222Z,1606339206.222 [Science:PeakDetectFDOM:A.PeakDetectVsDepth] Stopped
2020-11-25T21:20:06.222Z,1606339206.222 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-11-25T21:20:06.222Z,1606339206.222 [Science:PeakDetectOil] Stopped
2020-11-25T21:20:06.222Z,1606339206.222 [Science:PeakDetectOil](DEBUG): Aggregate::uninitialize Science:PeakDetectOil
2020-11-25T21:20:06.222Z,1606339206.222 [Science:PeakDetectOil:A.PeakDetectVsDepth] Stopped
2020-11-25T21:20:06.222Z,1606339206.222 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-11-25T21:20:06.222Z,1606339206.222 [Science:PeakDetectNO3] Stopped
2020-11-25T21:20:06.222Z,1606339206.222 [Science:PeakDetectNO3](DEBUG): Aggregate::uninitialize Science:PeakDetectNO3
2020-11-25T21:20:06.223Z,1606339206.223 [Science:PeakDetectNO3:A.PeakDetectVsDepth] Stopped
2020-11-25T21:20:06.223Z,1606339206.223 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-11-25T21:20:06.223Z,1606339206.223 [Science:HighestChlPeakReport] Stopped
2020-11-25T21:20:06.223Z,1606339206.223 [Science:HighestChlPeakReport](DEBUG): Aggregate::uninitialize Science:HighestChlPeakReport
2020-11-25T21:20:06.223Z,1606339206.223 [Science:HighestChlPeakReport:A.PeakDetectHorizontal] Stopped
2020-11-25T21:20:06.223Z,1606339206.223 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](DEBUG): Uninitialize.
2020-11-25T21:20:06.223Z,1606339206.223 [Science:PeakDetectChl] Stopped
2020-11-25T21:20:06.223Z,1606339206.223 [Science:PeakDetectChl](DEBUG): Aggregate::uninitialize Science:PeakDetectChl
2020-11-25T21:20:06.223Z,1606339206.223 [Science:PeakDetectChl:A.PeakDetectVsDepth] Stopped
2020-11-25T21:20:06.223Z,1606339206.223 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-11-25T21:20:06.223Z,1606339206.223 [Science:OceanCurrent:A.] Running Loop=1
2020-11-25T21:20:06.224Z,1606339206.224 [Science:Read_Oil] Stopped
2020-11-25T21:20:06.224Z,1606339206.224 [Science:F] Running Loop=1
2020-11-25T21:20:06.224Z,1606339206.224 [Science:F](DEBUG): Initialize ReadDataComponent to sense WetLabsUBAT.biolum_potential
2020-11-25T21:20:06.224Z,1606339206.224 [Science:E] Running Loop=1
2020-11-25T21:20:06.225Z,1606339206.225 [Science:E](DEBUG): Initialize ReadDataComponent to sense mass_concentration_of_chlorophyll_in_sea_water
2020-11-25T21:20:06.225Z,1606339206.225 [Science:D] Stopped
2020-11-25T21:20:06.225Z,1606339206.225 [Science:C] Running Loop=1
2020-11-25T21:20:06.225Z,1606339206.225 [Science:C](DEBUG): Initialize ReadDataComponent to sense CTD_Seabird.sea_water_temperature
2020-11-25T21:20:06.226Z,1606339206.226 [Science:C](DEBUG): Initialize ReadDataComponent to sense CTD_Seabird.sea_water_salinity
2020-11-25T21:20:06.226Z,1606339206.226 [Science:B] Running Loop=1
2020-11-25T21:20:06.226Z,1606339206.226 [Science:B](DEBUG): Initialize ReadDataComponent to sense sea_water_temperature
2020-11-25T21:20:06.227Z,1606339206.227 [Science:B](DEBUG): Initialize ReadDataComponent to sense sea_water_salinity
2020-11-25T21:20:06.227Z,1606339206.227 [Science:A] Stopped
2020-11-25T21:20:06.673Z,1606339206.673 [WetLabsBB2FL](INFO): Powering up
2020-11-25T21:20:09.884Z,1606339209.884 [CTD_Seabird](ERROR): Failed to parse device response: <!--startlogging-->
2020-11-25T21:20:42.952Z,1606339242.952 [NAL9602](FAULT): MT Queue status failed to be acquired within timeout. Will not retry this session.
2020-11-25T21:20:44.989Z,1606339244.989 [CommandLine](IMPORTANT): got command get CTD_Seabird.depth
2020-11-25T21:20:44.989Z,1606339244.989 [CommandLine](IMPORTANT): CTD_Seabird.depth -0.029779 m
2020-11-25T21:20:57.425Z,1606339257.425 [CommandLine](IMPORTANT): got command ubat on
2020-11-25T21:20:57.425Z,1606339257.425 [CommandLine](IMPORTANT): Enabling UBAT.
2020-11-25T21:20:58.155Z,1606339258.155 [WetLabsUBAT](INFO): Initializing
2020-11-25T21:20:58.157Z,1606339258.157 [WetLabsUBAT](INFO): readConfig(): serialNo_: UBAT0051, uartName_: /dev/ttyC1, optionalArgs_: 
2020-11-25T21:20:58.157Z,1606339258.157 [WetLabsUBAT](INFO): Powering up
2020-11-25T21:20:58.157Z,1606339258.157 [WetLabsUBAT](INFO): Checking LCM
2020-11-25T21:20:58.157Z,1606339258.157 [WetLabsUBAT](INFO): LCM OK
2020-11-25T21:20:58.249Z,1606339258.249 [WetLabsUBAT](INFO): setup() - setLineFormat()
2020-11-25T21:21:02.865Z,1606339262.865 [DeadReckonUsingMultipleVelocitySources] Software Fault, FailCount= 2
2020-11-25T21:21:02.865Z,1606339262.865 [DeadReckonUsingMultipleVelocitySources](ERROR): Software Fault
2020-11-25T21:21:02.918Z,1606339262.918 [CBIT](ERROR): Software Fault in component: DeadReckonUsingMultipleVelocitySources
2020-11-25T21:21:03.305Z,1606339263.305 [CBIT](INFO): Clearing failed state for component DeadReckonUsingMultipleVelocitySources
2020-11-25T21:21:03.305Z,1606339263.305 [DeadReckonUsingMultipleVelocitySources] No Fault, FailCount= 2
2020-11-25T21:21:08.576Z,1606339268.576 [WetLabsUBAT](INFO): Got instrument prompt
2020-11-25T21:21:10.721Z,1606339270.721 [WetLabsUBAT](INFO): Got instrument prompt
2020-11-25T21:21:11.783Z,1606339271.783 [WetLabsUBAT..StreamSerialDriver](INFO): device metadata:
Override SerialDriver::getDeviceMetadata()
2020-11-25T21:21:13.601Z,1606339273.601 [CommandLine](IMPORTANT): got command stop
2020-11-25T21:21:13.601Z,1606339273.601 [Supervisor](INFO): Stop Mission called by CommandLine::commandStop
2020-11-25T21:21:13.818Z,1606339273.818 [MissionManager](INFO): MissionManager is completed.
2020-11-25T21:21:13.818Z,1606339273.818 [MissionManager](INFO): Uninitializing Mission Science
2020-11-25T21:21:13.819Z,1606339273.819 [Science] Stopped
2020-11-25T21:21:13.819Z,1606339273.819 [Science](DEBUG): Aggregate::uninitialize Science
2020-11-25T21:21:13.819Z,1606339273.819 [Science:B] Stopped
2020-11-25T21:21:13.823Z,1606339273.823 [Science:C] Stopped
2020-11-25T21:21:13.823Z,1606339273.823 [Science:E] Stopped
2020-11-25T21:21:13.823Z,1606339273.823 [Science:F] Stopped
2020-11-25T21:21:13.823Z,1606339273.823 [Science:OceanCurrent] Stopped
2020-11-25T21:21:13.823Z,1606339273.823 [Science:OceanCurrent](DEBUG): Aggregate::uninitialize Science:OceanCurrent
2020-11-25T21:21:13.823Z,1606339273.823 [Science:OceanCurrent:A.] Stopped
2020-11-25T21:21:14.230Z,1606339274.230 [MissionManager](IMPORTANT): Started mission Default
2020-11-25T21:21:14.230Z,1606339274.230 [Default] Running Loop=1
2020-11-25T21:21:14.230Z,1606339274.230 [Default](DEBUG): Aggregate::initialize Default
2020-11-25T21:21:14.231Z,1606339274.231 [Default:B.GoToSurface] Running Loop=1
2020-11-25T21:21:14.231Z,1606339274.231 [Default:B.GoToSurface](DEBUG): Initialize GoToSurfaceComponent.
2020-11-25T21:21:14.243Z,1606339274.243 [Default:B.GoToSurface](DEBUG): No depth rate setting specified. Using default value of nan m/s.
2020-11-25T21:21:14.244Z,1606339274.244 [Default:B.GoToSurface](DEBUG): No pitch setting specified. Using default value of nan degrees.
2020-11-25T21:21:14.244Z,1606339274.244 [Default:B.GoToSurface](DEBUG): No speed setting specified. Using default value of 1.000000 m/s.
2020-11-25T21:21:14.244Z,1606339274.244 [Default:B.GoToSurface](DEBUG): No surface timeout specified. Using default value of 1000.000000 seconds.
2020-11-25T21:21:14.244Z,1606339274.244 [Default:B.GoToSurface](INFO): Received pitch timeout configuration 60.000000 seconds.
2020-11-25T21:21:14.245Z,1606339274.245 [Default:A.Wait] Running Loop=1
2020-11-25T21:21:14.245Z,1606339274.245 [Default:A.Wait](DEBUG): Initialize Wait Component.
2020-11-25T21:21:14.323Z,1606339274.323 [WetLabsBB2FL](INFO): Powering down
2020-11-25T21:21:15.920Z,1606339275.920 [WetLabsUBAT](INFO): isDataRequested() is false
2020-11-25T21:21:16.323Z,1606339276.323 [WetLabsUBAT](INFO): Powering down
2020-11-25T21:21:19.497Z,1606339279.497 [CommandLine](IMPORTANT): got command failComponent
2020-11-25T21:21:19.497Z,1606339279.497 [CommandLine](IMPORTANT): Failed components:
2020-11-25T21:21:19.497Z,1606339279.497 [CommandLine](IMPORTANT): No failed Components.
2020-11-25T21:21:25.313Z,1606339285.313 [CommandLine](IMPORTANT): got command restart system
2020-11-25T21:21:27.387Z,1606339287.387 [CommandLine ThreadHandler](INFO): Uninitializing protected caller thread.
2020-11-25T21:21:27.388Z,1606339287.388 [CommandLine ThreadHandler](INFO): Thread cancelled.
2020-11-25T21:21:27.411Z,1606339287.411 [Supervisor](DEBUG): Uninitializing supervisor and starting cleanup.  Bye!
2020-11-25T21:21:27.411Z,1606339287.411 [CommandLine ThreadHandler](INFO): Thread cancelled.
2020-11-25T21:21:27.412Z,1606339287.412 [CommandLine](INFO): Join timeout helper Thread ID is 2221
2020-11-25T21:21:27.412Z,1606339287.412 [ComponentRegistry](INFO): Shutting down NavChartDb ThreadHandler
2020-11-25T21:21:27.412Z,1606339287.412 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2020-11-25T21:21:27.413Z,1606339287.413 [NavChartDb](INFO): Join timeout helper Thread ID is 2222
2020-11-25T21:21:27.521Z,1606339287.521 [Default:A.Wait](INFO): Done Waiting.
2020-11-25T21:21:27.521Z,1606339287.521 [Default:A.Wait] Stopped
2020-11-25T21:21:27.521Z,1606339287.521 [Default:A.Wait](DEBUG): Uninitialize Wait Component.
2020-11-25T21:21:27.775Z,1606339287.775 [NavChartDb ThreadHandler](INFO): Uninitializing protected caller thread.
2020-11-25T21:21:27.775Z,1606339287.775 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2020-11-25T21:21:27.783Z,1606339287.783 [ComponentRegistry](INFO): Shutting down WetLabsUBAT ThreadHandler
2020-11-25T21:21:27.783Z,1606339287.783 [WetLabsUBAT ThreadHandler](INFO): Thread cancelled.
2020-11-25T21:21:27.783Z,1606339287.783 [WetLabsUBAT](INFO): Join timeout helper Thread ID is 2223
2020-11-25T21:21:27.893Z,1606339287.893 [Default:CheckIn] Running Loop=1
2020-11-25T21:21:27.893Z,1606339287.893 [Default:CheckIn](DEBUG): Aggregate::initialize Default:CheckIn
2020-11-25T21:21:27.894Z,1606339287.894 [Default:CheckIn:Read_GPS] Running Loop=1
2020-11-25T21:21:28.044Z,1606339288.044 [WetLabsUBAT ThreadHandler](INFO): Uninitializing protected caller thread.
2020-11-25T21:21:28.045Z,1606339288.045 [WetLabsUBAT](INFO): Powering down
2020-11-25T21:21:28.045Z,1606339288.045 [WetLabsUBAT ThreadHandler](INFO): Thread cancelled.
2020-11-25T21:21:28.063Z,1606339288.063 [ComponentRegistry](INFO): Shutting down WetLabsBB2FL ThreadHandler
2020-11-25T21:21:28.063Z,1606339288.063 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2020-11-25T21:21:28.064Z,1606339288.064 [WetLabsBB2FL](INFO): Join timeout helper Thread ID is 2224
2020-11-25T21:21:28.339Z,1606339288.339 [WetLabsBB2FL ThreadHandler](INFO): Uninitializing protected caller thread.
2020-11-25T21:21:28.340Z,1606339288.340 [WetLabsBB2FL](INFO): Powering down
2020-11-25T21:21:28.341Z,1606339288.341 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2020-11-25T21:21:28.347Z,1606339288.347 [ComponentRegistry](INFO): Shutting down CTD_Seabird ThreadHandler
2020-11-25T21:21:28.347Z,1606339288.347 [CTD_Seabird ThreadHandler](INFO): Thread cancelled.
2020-11-25T21:21:28.348Z,1606339288.348 [CTD_Seabird](INFO): Join timeout helper Thread ID is 2225
2020-11-25T21:21:29.235Z,1606339289.235 [CTD_Seabird](INFO): Powering down
2020-11-25T21:21:29.250Z,1606339289.250 [CTD_Seabird ThreadHandler](INFO): Uninitializing protected caller thread.
2020-11-25T21:21:29.251Z,1606339289.251 [CTD_Seabird](INFO): Powering down
2020-11-25T21:21:29.263Z,1606339289.263 [CTD_Seabird ThreadHandler](INFO): Thread cancelled.
2020-11-25T21:21:29.264Z,1606339289.264 [ComponentRegistry](INFO): Shutting down BackSeatDriver ThreadHandler
2020-11-25T21:21:29.265Z,1606339289.265 [BackSeatDriver ThreadHandler](INFO): Thread cancelled.
2020-11-25T21:21:29.265Z,1606339289.265 [BackSeatDriver](INFO): Join timeout helper Thread ID is 2226
2020-11-25T21:21:29.275Z,1606339289.275 [BackSeatDriver ThreadHandler](INFO): Uninitializing protected caller thread.
2020-11-25T21:21:29.276Z,1606339289.276 [BackSeatDriver ThreadHandler](INFO): Thread cancelled.
2020-11-25T21:21:29.284Z,1606339289.284 [ComponentRegistry](INFO): Shutting down Radio_Surface ThreadHandler
2020-11-25T21:21:29.284Z,1606339289.284 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2020-11-25T21:21:29.284Z,1606339289.284 [Radio_Surface](INFO): Join timeout helper Thread ID is 2227
2020-11-25T21:21:29.660Z,1606339289.660 [Radio_Surface](INFO): Powering down
2020-11-25T21:21:29.662Z,1606339289.662 [Radio_Surface ThreadHandler](INFO): Uninitializing protected caller thread.
2020-11-25T21:21:29.663Z,1606339289.663 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2020-11-25T21:21:29.676Z,1606339289.676 [ComponentRegistry](INFO): Shutting down Onboard ThreadHandler
2020-11-25T21:21:29.676Z,1606339289.676 [Onboard ThreadHandler](INFO): Thread cancelled.
2020-11-25T21:21:29.676Z,1606339289.676 [Onboard](INFO): Join timeout helper Thread ID is 2228
2020-11-25T21:21:29.999Z,1606339289.999 [DataOverHttps](INFO): Radio surface powered OFF, will not connect.
2020-11-25T21:21:31.867Z,1606339291.867 [Onboard ThreadHandler](INFO): Uninitializing protected caller thread.
2020-11-25T21:21:31.867Z,1606339291.867 [Onboard ThreadHandler](INFO): Thread cancelled.
2020-11-25T21:21:31.880Z,1606339291.880 [ComponentRegistry](INFO): Shutting down DataOverHttps ThreadHandler
2020-11-25T21:21:31.880Z,1606339291.880 [DataOverHttps ThreadHandler](INFO): Thread cancelled.
2020-11-25T21:21:31.880Z,1606339291.880 [DataOverHttps](INFO): Join timeout helper Thread ID is 2229
2020-11-25T21:21:32.008Z,1606339292.008 [DataOverHttps ThreadHandler](INFO): Uninitializing protected caller thread.
2020-11-25T21:21:32.009Z,1606339292.009 [DataOverHttps ThreadHandler](INFO): Thread cancelled.
2020-11-25T21:21:32.022Z,1606339292.022 [ComponentRegistry](INFO): Shutting down logger ThreadHandler
2020-11-25T21:21:32.022Z,1606339292.022 [logger ThreadHandler](INFO): Thread cancelled.
2020-11-25T21:21:32.023Z,1606339292.023 [logger](INFO): Join timeout helper Thread ID is 2230
2020-11-25T21:21:32.055Z,1606339292.055 [logger ThreadHandler](INFO): Uninitializing protected caller thread.
2020-11-25T21:21:32.055Z,1606339292.055 [logger ThreadHandler](INFO): Thread cancelled.
2020-11-25T21:21:32.064Z,1606339292.064 [ComponentRegistry](INFO): Shutting down CommandLine ThreadHandler
2020-11-25T21:21:32.064Z,1606339292.064 [CommandLine ThreadHandler](INFO): Thread cancelled.
2020-11-25T21:21:32.064Z,1606339292.064 [ComponentRegistry](INFO): Shutting down controlThread ThreadHandler
2020-11-25T21:21:32.064Z,1606339292.064 [controlThread ThreadHandler](INFO): Thread cancelled.
2020-11-25T21:21:32.064Z,1606339292.064 [controlThread](INFO): Join timeout helper Thread ID is 2231
2020-11-25T21:21:32.311Z,1606339292.311 [controlThread ThreadHandler](INFO): Uninitializing protected caller thread.
2020-11-25T21:21:32.311Z,1606339292.311 [controlThread](DEBUG): Uninitializing ControlThr