2020-10-06T16:37:38.225Z,1602002258.225 [Supervisor](DEBUG): Initializing supervisor.
2020-10-06T16:37:38.228Z,1602002258.228 [SyncHandler](DEBUG): Created PCaller Thread at 404514E0
2020-10-06T16:37:38.229Z,1602002258.229 [SyncHandler](INFO): Protected caller Thread ID is 1055
2020-10-06T16:37:38.229Z,1602002258.229 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2020-10-06T16:37:38.230Z,1602002258.230 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 404814E0
2020-10-06T16:37:38.231Z,1602002258.231 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 1056
2020-10-06T16:37:38.234Z,1602002258.234 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2020-10-06T16:37:38.249Z,1602002258.249 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2020-10-06T16:37:38.250Z,1602002258.250 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 404B14E0
2020-10-06T16:37:38.250Z,1602002258.250 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 1057
2020-10-06T16:37:38.251Z,1602002258.251 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2020-10-06T16:37:38.252Z,1602002258.252 [logger ThreadHandler](DEBUG): Created PCaller Thread at 404E14E0
2020-10-06T16:37:38.252Z,1602002258.252 [logger ThreadHandler](INFO): Protected caller Thread ID is 1058
2020-10-06T16:37:38.254Z,1602002258.254 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2020-10-06T16:37:38.255Z,1602002258.255 [Supervisor](INFO): Looking for Config files in directory: Config/
2020-10-06T16:37:38.256Z,1602002258.256 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2020-10-06T16:37:38.350Z,1602002258.350 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2020-10-06T16:37:38.350Z,1602002258.350 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2020-10-06T16:37:38.940Z,1602002258.940 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2020-10-06T16:37:38.941Z,1602002258.941 [Supervisor](INFO): Opening Config file at: Config/Dock.cfg
2020-10-06T16:37:39.137Z,1602002259.137 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Dock
2020-10-06T16:37:39.137Z,1602002259.137 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2020-10-06T16:37:39.234Z,1602002259.234 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2020-10-06T16:37:39.235Z,1602002259.235 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2020-10-06T16:37:39.334Z,1602002259.334 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2020-10-06T16:37:39.335Z,1602002259.335 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2020-10-06T16:37:39.414Z,1602002259.414 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2020-10-06T16:37:39.552Z,1602002259.552 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2020-10-06T16:37:39.552Z,1602002259.552 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2020-10-06T16:37:39.873Z,1602002259.873 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2020-10-06T16:37:39.874Z,1602002259.874 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2020-10-06T16:37:40.723Z,1602002260.723 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2020-10-06T16:37:40.724Z,1602002260.724 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2020-10-06T16:37:40.866Z,1602002260.866 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2020-10-06T16:37:40.867Z,1602002260.867 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2020-10-06T16:37:41.056Z,1602002261.056 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2020-10-06T16:37:41.056Z,1602002261.056 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2020-10-06T16:37:41.551Z,1602002261.551 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2020-10-06T16:37:41.552Z,1602002261.552 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2020-10-06T16:37:41.766Z,1602002261.766 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2020-10-06T16:37:41.767Z,1602002261.767 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2020-10-06T16:37:41.965Z,1602002261.965 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2020-10-06T16:37:41.966Z,1602002261.966 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2020-10-06T16:37:42.373Z,1602002262.373 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2020-10-06T16:37:42.373Z,1602002262.373 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2020-10-06T16:37:42.694Z,1602002262.694 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2020-10-06T16:37:42.697Z,1602002262.697 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-pontus/
2020-10-06T16:37:42.697Z,1602002262.697 [Supervisor](INFO): Opening Config file at: Config/lrauv-pontus/secure.cfg
2020-10-06T16:37:42.779Z,1602002262.779 [Supervisor](INFO): Opening Config file at: Config/lrauv-pontus/Sensor.cfg
2020-10-06T16:37:42.933Z,1602002262.933 [Supervisor](INFO): Opening Config file at: Config/lrauv-pontus/Servo.cfg
2020-10-06T16:37:43.039Z,1602002263.039 [Supervisor](INFO): Opening Config file at: Config/lrauv-pontus/Simulator.cfg
2020-10-06T16:37:43.182Z,1602002263.182 [Supervisor](INFO): Opening Config file at: Config/lrauv-pontus/logger.cfg
2020-10-06T16:37:43.275Z,1602002263.275 [Supervisor](INFO): Opening Config file at: Config/lrauv-pontus/vehicle.cfg
2020-10-06T16:37:43.468Z,1602002263.468 [Supervisor](INFO): Opening Config file at: Config/lrauv-pontus/Battery.cfg
2020-10-06T16:37:43.698Z,1602002263.698 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Battery
2020-10-06T16:37:43.698Z,1602002263.698 [Supervisor](INFO): Opening Config file at: Config/lrauv-pontus/Navigation.cfg
2020-10-06T16:37:43.790Z,1602002263.790 [Supervisor](INFO): Opening Config file at: Config/lrauv-pontus/BIT.cfg
2020-10-06T16:37:43.886Z,1602002263.886 [Supervisor](INFO): Opening Config file at: Config/lrauv-pontus/Science.cfg
2020-10-06T16:37:44.015Z,1602002264.015 [Supervisor](INFO): Opening Config file at: Config/lrauv-pontus/Control.cfg
2020-10-06T16:37:44.113Z,1602002264.113 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-pontus/root/
2020-10-06T16:37:44.113Z,1602002264.113 [Supervisor](IMPORTANT): Reading configuration overrides from Data/persisted.cfg
2020-10-06T16:37:44.131Z,1602002264.131 [Module Loader](DEBUG): Loading Module at Modules/Dock.so
2020-10-06T16:37:44.214Z,1602002264.214 [Module Loader](DEBUG): Loaded Module: Dock (Contains behaviors and commands for docking)
2020-10-06T16:37:44.214Z,1602002264.214 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2020-10-06T16:37:44.264Z,1602002264.264 [VerticalControl](DEBUG): Construct VerticalControl.
2020-10-06T16:37:44.377Z,1602002264.377 [VerticalControl] Loaded
2020-10-06T16:37:44.377Z,1602002264.377 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2020-10-06T16:37:44.378Z,1602002264.378 [HorizontalControl](DEBUG): Construct HorizontalControl.
2020-10-06T16:37:44.459Z,1602002264.459 [HorizontalControl] Loaded
2020-10-06T16:37:44.459Z,1602002264.459 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2020-10-06T16:37:44.460Z,1602002264.460 [SpeedControl](DEBUG): Construct SpeedControl.
2020-10-06T16:37:44.465Z,1602002264.465 [SpeedControl] Loaded
2020-10-06T16:37:44.466Z,1602002264.466 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2020-10-06T16:37:44.466Z,1602002264.466 [LoopControl](DEBUG): Construct LoopControl.
2020-10-06T16:37:44.467Z,1602002264.467 [LoopControl] Loaded
2020-10-06T16:37:44.467Z,1602002264.467 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2020-10-06T16:37:44.467Z,1602002264.467 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2020-10-06T16:37:44.468Z,1602002264.468 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2020-10-06T16:37:44.510Z,1602002264.510 [DepthRateCalculator] Loaded
2020-10-06T16:37:44.510Z,1602002264.510 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2020-10-06T16:37:44.516Z,1602002264.516 [PitchRateCalculator] Loaded
2020-10-06T16:37:44.516Z,1602002264.516 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2020-10-06T16:37:44.531Z,1602002264.531 [SpeedCalculator] Loaded
2020-10-06T16:37:44.532Z,1602002264.532 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2020-10-06T16:37:44.553Z,1602002264.553 [TempGradientCalculator] Loaded
2020-10-06T16:37:44.553Z,1602002264.553 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2020-10-06T16:37:44.558Z,1602002264.558 [YawRateCalculator] Loaded
2020-10-06T16:37:44.558Z,1602002264.558 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2020-10-06T16:37:44.588Z,1602002264.588 [ElevatorOffsetCalculator] Loaded
2020-10-06T16:37:44.588Z,1602002264.588 [ComponentRegistry](DEBUG): SyncComponent "ElevatorOffsetCalculator" handled in the control thread.
2020-10-06T16:37:44.589Z,1602002264.589 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2020-10-06T16:37:44.589Z,1602002264.589 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2020-10-06T16:37:44.617Z,1602002264.617 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2020-10-06T16:37:44.617Z,1602002264.617 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2020-10-06T16:37:44.706Z,1602002264.706 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2020-10-06T16:37:44.707Z,1602002264.707 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2020-10-06T16:37:45.198Z,1602002265.198 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2020-10-06T16:37:45.199Z,1602002265.199 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2020-10-06T16:37:45.317Z,1602002265.317 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2020-10-06T16:37:45.317Z,1602002265.317 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2020-10-06T16:37:45.666Z,1602002265.666 [AHRS_M2](DEBUG): LcmSlateWriter::add(): platform_orientation
2020-10-06T16:37:45.671Z,1602002265.671 [AHRS_M2](INFO): created writer for : platform_orientation
2020-10-06T16:37:45.673Z,1602002265.673 [AHRS_M2](DEBUG): LcmSlateWriter::add(): platform_magnetic_orientation
2020-10-06T16:37:45.678Z,1602002265.678 [AHRS_M2](INFO): created writer for : platform_magnetic_orientation
2020-10-06T16:37:45.679Z,1602002265.679 [AHRS_M2](DEBUG): LcmSlateWriter::add(): platform_pitch_angle
2020-10-06T16:37:45.684Z,1602002265.684 [AHRS_M2](INFO): created writer for : platform_pitch_angle
2020-10-06T16:37:45.685Z,1602002265.685 [AHRS_M2](DEBUG): LcmSlateWriter::add(): platform_roll_angle
2020-10-06T16:37:45.690Z,1602002265.690 [AHRS_M2](INFO): created writer for : platform_roll_angle
2020-10-06T16:37:45.763Z,1602002265.763 [AHRS_M2] Loaded
2020-10-06T16:37:45.764Z,1602002265.764 [ComponentRegistry](DEBUG): SyncComponent "AHRS_M2" handled in the control thread.
2020-10-06T16:37:45.842Z,1602002265.842 [DataOverHttps] Loaded
2020-10-06T16:37:45.842Z,1602002265.842 [ComponentRegistry](DEBUG): Component "DataOverHttps" handled in its own thread.
2020-10-06T16:37:45.843Z,1602002265.843 [DataOverHttps ThreadHandler](DEBUG): Created PCaller Thread at 4090E4E0
2020-10-06T16:37:45.843Z,1602002265.843 [DataOverHttps ThreadHandler](INFO): Protected caller Thread ID is 1140
2020-10-06T16:37:45.874Z,1602002265.874 [Depth_Keller] Loaded
2020-10-06T16:37:45.874Z,1602002265.874 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2020-10-06T16:37:45.993Z,1602002265.993 [NAL9602] Loaded
2020-10-06T16:37:45.993Z,1602002265.993 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2020-10-06T16:37:46.042Z,1602002266.042 [Onboard] Loaded
2020-10-06T16:37:46.043Z,1602002266.043 [ComponentRegistry](DEBUG): Component "Onboard" handled in its own thread.
2020-10-06T16:37:46.044Z,1602002266.044 [Onboard ThreadHandler](DEBUG): Created PCaller Thread at 4093E4E0
2020-10-06T16:37:46.044Z,1602002266.044 [Onboard ThreadHandler](INFO): Protected caller Thread ID is 1141
2020-10-06T16:37:46.064Z,1602002266.064 [Radio_Surface] Loaded
2020-10-06T16:37:46.064Z,1602002266.064 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2020-10-06T16:37:46.065Z,1602002266.065 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 4096E4E0
2020-10-06T16:37:46.065Z,1602002266.065 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 1142
2020-10-06T16:37:46.127Z,1602002266.127 [RDI_Pathfinder] Loaded
2020-10-06T16:37:46.127Z,1602002266.127 [ComponentRegistry](DEBUG): SyncComponent "RDI_Pathfinder" handled in the control thread.
2020-10-06T16:37:46.283Z,1602002266.283 [DAT] Loaded
2020-10-06T16:37:46.283Z,1602002266.283 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2020-10-06T16:37:47.832Z,1602002267.832 [BPC1] Loaded
2020-10-06T16:37:47.832Z,1602002267.832 [ComponentRegistry](DEBUG): SyncComponent "BPC1" handled in the control thread.
2020-10-06T16:37:47.833Z,1602002267.833 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2020-10-06T16:37:47.833Z,1602002267.833 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2020-10-06T16:37:47.952Z,1602002267.952 [DeadReckonUsingMultipleVelocitySources] Loaded
2020-10-06T16:37:47.953Z,1602002267.953 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2020-10-06T16:37:47.973Z,1602002267.973 [NavChart] Loaded
2020-10-06T16:37:47.973Z,1602002267.973 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2020-10-06T16:37:47.977Z,1602002267.977 [UniversalFixResidualReporter] Loaded
2020-10-06T16:37:47.978Z,1602002267.978 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2020-10-06T16:37:47.978Z,1602002267.978 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2020-10-06T16:37:47.979Z,1602002267.979 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2020-10-06T16:37:48.255Z,1602002268.255 [SBIT](DEBUG): Construct Startup Built In Test.
2020-10-06T16:37:48.279Z,1602002268.279 [SBIT] Loaded
2020-10-06T16:37:48.279Z,1602002268.279 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2020-10-06T16:37:48.280Z,1602002268.280 [IBIT](DEBUG): Construct Initiated Built In Test.
2020-10-06T16:37:48.293Z,1602002268.293 [IBIT] Loaded
2020-10-06T16:37:48.293Z,1602002268.293 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2020-10-06T16:37:48.296Z,1602002268.296 [CBIT](DEBUG): Construct Continuous Built In Test.
2020-10-06T16:37:48.671Z,1602002268.671 [CBIT] Loaded
2020-10-06T16:37:48.671Z,1602002268.671 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2020-10-06T16:37:48.671Z,1602002268.671 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2020-10-06T16:37:48.672Z,1602002268.672 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2020-10-06T16:37:48.802Z,1602002268.802 [BuoyancyServo] Loaded
2020-10-06T16:37:48.802Z,1602002268.802 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2020-10-06T16:37:48.832Z,1602002268.832 [ElevatorServo] Loaded
2020-10-06T16:37:48.832Z,1602002268.832 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2020-10-06T16:37:48.861Z,1602002268.861 [MassServo] Loaded
2020-10-06T16:37:48.861Z,1602002268.861 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2020-10-06T16:37:48.889Z,1602002268.889 [RudderServo] Loaded
2020-10-06T16:37:48.889Z,1602002268.889 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2020-10-06T16:37:48.918Z,1602002268.918 [ThrusterServo] Loaded
2020-10-06T16:37:48.918Z,1602002268.918 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2020-10-06T16:37:48.918Z,1602002268.918 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2020-10-06T16:37:48.919Z,1602002268.919 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2020-10-06T16:37:48.938Z,1602002268.938 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2020-10-06T16:37:48.938Z,1602002268.938 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2020-10-06T16:37:49.184Z,1602002269.184 [BackSeatDriver] Loaded
2020-10-06T16:37:49.184Z,1602002269.184 [ComponentRegistry](DEBUG): Component "BackSeatDriver" handled in its own thread.
2020-10-06T16:37:49.186Z,1602002269.186 [BackSeatDriver ThreadHandler](DEBUG): Created PCaller Thread at 40B054E0
2020-10-06T16:37:49.186Z,1602002269.186 [BackSeatDriver ThreadHandler](INFO): Protected caller Thread ID is 1143
2020-10-06T16:37:49.216Z,1602002269.216 [CTD_Seabird](DEBUG): LcmSlateWriter::add(): sea_water_density
2020-10-06T16:37:49.221Z,1602002269.221 [CTD_Seabird](INFO): created writer for : sea_water_density
2020-10-06T16:37:49.221Z,1602002269.221 [CTD_Seabird](DEBUG): LcmSlateWriter::add(): depth
2020-10-06T16:37:49.226Z,1602002269.226 [CTD_Seabird](INFO): created writer for : depth
2020-10-06T16:37:49.227Z,1602002269.227 [CTD_Seabird](DEBUG): LcmSlateWriter::add(): sea_water_pressure
2020-10-06T16:37:49.232Z,1602002269.232 [CTD_Seabird](INFO): created writer for : sea_water_pressure
2020-10-06T16:37:49.233Z,1602002269.233 [CTD_Seabird](DEBUG): LcmSlateWriter::add(): sea_water_salinity
2020-10-06T16:37:49.238Z,1602002269.238 [CTD_Seabird](INFO): created writer for : sea_water_salinity
2020-10-06T16:37:49.239Z,1602002269.239 [CTD_Seabird](DEBUG): LcmSlateWriter::add(): sea_water_temperature
2020-10-06T16:37:49.244Z,1602002269.244 [CTD_Seabird](INFO): created writer for : sea_water_temperature
2020-10-06T16:37:49.245Z,1602002269.245 [CTD_Seabird](DEBUG): LcmSlateWriter::add(): sea_water_electrical_conductivity
2020-10-06T16:37:49.250Z,1602002269.250 [CTD_Seabird](INFO): created writer for : sea_water_electrical_conductivity
2020-10-06T16:37:49.251Z,1602002269.251 [CTD_Seabird](DEBUG): LcmSlateWriter::add(): speed_of_sound_in_sea_water
2020-10-06T16:37:49.256Z,1602002269.256 [CTD_Seabird](INFO): created writer for : speed_of_sound_in_sea_water
2020-10-06T16:37:49.283Z,1602002269.283 [CTD_Seabird] Loaded
2020-10-06T16:37:49.284Z,1602002269.284 [ComponentRegistry](DEBUG): Component "CTD_Seabird" handled in its own thread.
2020-10-06T16:37:49.285Z,1602002269.285 [CTD_Seabird ThreadHandler](DEBUG): Created PCaller Thread at 40B354E0
2020-10-06T16:37:49.285Z,1602002269.285 [CTD_Seabird ThreadHandler](INFO): Protected caller Thread ID is 1144
2020-10-06T16:37:49.336Z,1602002269.336 [ESPComponent] Loaded
2020-10-06T16:37:49.336Z,1602002269.336 [ComponentRegistry](DEBUG): SyncComponent "ESPComponent" handled in the control thread.
2020-10-06T16:37:49.368Z,1602002269.368 [PAR_Licor] Loaded
2020-10-06T16:37:49.369Z,1602002269.369 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2020-10-06T16:37:49.391Z,1602002269.391 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.Output470
2020-10-06T16:37:49.391Z,1602002269.391 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: Output470
2020-10-06T16:37:49.396Z,1602002269.396 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.Output650
2020-10-06T16:37:49.396Z,1602002269.396 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: Output650
2020-10-06T16:37:49.400Z,1602002269.400 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.OutputChl
2020-10-06T16:37:49.400Z,1602002269.400 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: OutputChl
2020-10-06T16:37:49.405Z,1602002269.405 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.VolumeScatCoeff117deg470nm
2020-10-06T16:37:49.405Z,1602002269.405 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: VolumeScatCoeff117deg470nm
2020-10-06T16:37:49.409Z,1602002269.409 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.VolumeScatCoeff117deg650nm
2020-10-06T16:37:49.409Z,1602002269.409 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: VolumeScatCoeff117deg650nm
2020-10-06T16:37:49.414Z,1602002269.414 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.BackscatteringCoeff470nm
2020-10-06T16:37:49.414Z,1602002269.414 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: BackscatteringCoeff470nm
2020-10-06T16:37:49.418Z,1602002269.418 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.BackscatteringCoeff650nm
2020-10-06T16:37:49.418Z,1602002269.418 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: BackscatteringCoeff650nm
2020-10-06T16:37:49.423Z,1602002269.423 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): mass_concentration_of_chlorophyll_in_sea_water
2020-10-06T16:37:49.428Z,1602002269.428 [WetLabsBB2FL](INFO): created writer for : mass_concentration_of_chlorophyll_in_sea_water
2020-10-06T16:37:49.428Z,1602002269.428 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.bin_median_mass_concentration_of_chlorophyll_in_sea_water
2020-10-06T16:37:49.428Z,1602002269.428 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: bin_median_mass_concentration_of_chlorophyll_in_sea_water
2020-10-06T16:37:49.433Z,1602002269.433 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.bin_mean_mass_concentration_of_chlorophyll_in_sea_water
2020-10-06T16:37:49.433Z,1602002269.433 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: bin_mean_mass_concentration_of_chlorophyll_in_sea_water
2020-10-06T16:37:49.438Z,1602002269.438 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.bin_variance_mass_concentration_of_chlorophyll_in_sea_water
2020-10-06T16:37:49.438Z,1602002269.438 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: bin_variance_mass_concentration_of_chlorophyll_in_sea_water
2020-10-06T16:37:49.442Z,1602002269.442 [WetLabsBB2FL] Loaded
2020-10-06T16:37:49.443Z,1602002269.443 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2020-10-06T16:37:49.444Z,1602002269.444 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 40B654E0
2020-10-06T16:37:49.444Z,1602002269.444 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 1145
2020-10-06T16:37:49.445Z,1602002269.445 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2020-10-06T16:37:49.448Z,1602002269.448 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2020-10-06T16:37:49.449Z,1602002269.449 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2020-10-06T16:37:49.456Z,1602002269.456 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2020-10-06T16:37:49.457Z,1602002269.457 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 40B954E0
2020-10-06T16:37:49.457Z,1602002269.457 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 1146
2020-10-06T16:37:49.462Z,1602002269.462 [Supervisor](INFO): Main Thread ID is 588
2020-10-06T16:37:49.462Z,1602002269.462 [Supervisor](DEBUG): Running supervisor.
2020-10-06T16:37:49.463Z,1602002269.463 [CommandLine ThreadHandler](INFO): Handler Thread ID is 1147
2020-10-06T16:37:49.465Z,1602002269.465 [controlThread ThreadHandler](INFO): Handler Thread ID is 1148
2020-10-06T16:37:49.466Z,1602002269.466 [controlThread](DEBUG): Initializing ControlThread
2020-10-06T16:37:49.466Z,1602002269.466 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2020-10-06T16:37:49.468Z,1602002269.468 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2020-10-06T16:37:49.469Z,1602002269.469 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2020-10-06T16:37:49.469Z,1602002269.469 [LoopControl](DEBUG): Initialize LoopControlComponent.
2020-10-06T16:37:49.470Z,1602002269.470 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2020-10-06T16:37:49.470Z,1602002269.470 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2020-10-06T16:37:49.470Z,1602002269.470 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2020-10-06T16:37:49.471Z,1602002269.471 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2020-10-06T16:37:49.471Z,1602002269.471 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2020-10-06T16:37:49.472Z,1602002269.472 [ElevatorOffsetCalculator](DEBUG): Initializing ElevatorOffsetCalculator.
2020-10-06T16:37:49.478Z,1602002269.478 [NavChart](DEBUG): Initialize NavChart Navigation.
2020-10-06T16:37:49.478Z,1602002269.478 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2020-10-06T16:37:49.478Z,1602002269.478 [SBIT](INFO): Initialize SBIT Component.
2020-10-06T16:37:49.479Z,1602002269.479 [SBIT](IMPORTANT): git: 2020-09-25-4-g3c79f45c2
2020-10-06T16:37:49.479Z,1602002269.479 [SBIT](INFO): git hash: 3c79f45c23e378871ed20937b122d1fb360f9687
2020-10-06T16:37:49.479Z,1602002269.479 [SBIT](IMPORTANT): Kernel Release: 2.6.27.8
2020-10-06T16:37:49.481Z,1602002269.481 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #1 PREEMPT Thu Feb 21 11:17:40 PST 2019
Kernel Reported: #1 PREEMPT Thu Aug 6 12:04:53 PDT 2020
2020-10-06T16:37:49.482Z,1602002269.482 [SBIT](INFO): Beginning SBIT in 99.000000 seconds.
2020-10-06T16:37:49.482Z,1602002269.482 [IBIT](INFO): Initialize IBIT Component.
2020-10-06T16:37:49.483Z,1602002269.483 [CBIT](DEBUG): Initialize CBIT Component.
2020-10-06T16:37:49.484Z,1602002269.484 [logger ThreadHandler](INFO): Handler Thread ID is 1149
2020-10-06T16:37:49.496Z,1602002269.496 [CBIT](DEBUG): Initialized mux pins.
2020-10-06T16:37:49.496Z,1602002269.496 [CBIT](DEBUG): Initializing the watchdog timer.
2020-10-06T16:37:49.501Z,1602002269.501 [DataOverHttps ThreadHandler](INFO): Handler Thread ID is 1150
2020-10-06T16:37:49.502Z,1602002269.502 [DataOverHttps](DEBUG): dashIP=134.89.2.23 starts with a digit so assuming it is a numeric IP
2020-10-06T16:37:49.509Z,1602002269.509 [Onboard ThreadHandler](INFO): Handler Thread ID is 1151
2020-10-06T16:37:49.521Z,1602002269.521 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2020-10-06T16:37:49.521Z,1602002269.521 [CBIT](DEBUG): Initializing heartbeat.
2020-10-06T16:37:49.530Z,1602002269.530 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 1152
2020-10-06T16:37:49.553Z,1602002269.553 [BackSeatDriver ThreadHandler](INFO): Handler Thread ID is 1153
2020-10-06T16:37:49.565Z,1602002269.565 [CTD_Seabird ThreadHandler](INFO): Handler Thread ID is 1154
2020-10-06T16:37:49.565Z,1602002269.565 [CTD_Seabird](DEBUG): Initializing CTD_Seabird.
2020-10-06T16:37:49.570Z,1602002269.570 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 1156
2020-10-06T16:37:49.571Z,1602002269.571 [WetLabsBB2FL](INFO): Powering down
2020-10-06T16:37:49.592Z,1602002269.592 [CBIT](DEBUG): Deactivating GF circuits.
2020-10-06T16:37:49.593Z,1602002269.593 [CBIT](DEBUG): Deactivating emergency mode.
2020-10-06T16:37:49.605Z,1602002269.605 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 1157
2020-10-06T16:37:49.608Z,1602002269.608 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US1WC07M.000
2020-10-06T16:37:49.608Z,1602002269.608 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2020-10-06T16:37:49.608Z,1602002269.608 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US2WC11M.000
2020-10-06T16:37:49.608Z,1602002269.608 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2020-10-06T16:37:49.609Z,1602002269.609 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US3CA52M.000
2020-10-06T16:37:49.609Z,1602002269.609 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2020-10-06T16:37:49.609Z,1602002269.609 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US4CA60M.000
2020-10-06T16:37:49.609Z,1602002269.609 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2020-10-06T16:37:49.609Z,1602002269.609 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA50M.000
2020-10-06T16:37:49.609Z,1602002269.609 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2020-10-06T16:37:49.609Z,1602002269.609 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA61M.000
2020-10-06T16:37:49.610Z,1602002269.610 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2020-10-06T16:37:49.610Z,1602002269.610 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA62M.000
2020-10-06T16:37:49.610Z,1602002269.610 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2020-10-06T16:37:49.610Z,1602002269.610 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA83M.000
2020-10-06T16:37:49.610Z,1602002269.610 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2020-10-06T16:37:49.628Z,1602002269.628 [CBIT](DEBUG): Backplane powered.
2020-10-06T16:37:49.633Z,1602002269.633 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2020-10-06T16:37:49.643Z,1602002269.643 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2020-10-06T16:37:49.678Z,1602002269.678 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2020-10-06T16:37:49.679Z,1602002269.679 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2020-10-06T16:37:49.746Z,1602002269.746 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2020-10-06T16:37:49.747Z,1602002269.747 [Default:A.Wait](DEBUG): Construct Wait.
2020-10-06T16:37:49.765Z,1602002269.765 [Default:B.GoToSurface](DEBUG): Construct GoToSurface.
2020-10-06T16:37:49.796Z,1602002269.796 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2020-10-06T16:37:49.798Z,1602002269.798 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2020-10-06T16:37:49.831Z,1602002269.831 [Default:E.Execute](DEBUG): Construct Execute.
2020-10-06T16:37:49.835Z,1602002269.835 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xmlns="Tethys"
         xmlns:Units="Tethys/Units"
         xmlns:Guidance="Tethys/Guidance"
         xmlns:Universal="Tethys/Universal"
         xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                             Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                             Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                             Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
         Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:Wait>
        <Description>
            Wait a moment to see if the scheduler starts a new mission before
            starting to actually run Default.
        </Description>
        <Sequence/>
        <Setting><Guidance:Wait.duration/><Units:second/><Value>13</Value></Setting>
    </Guidance:Wait>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn on</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2020-10-06T16:37:49.844Z,1602002269.844 [controlThread](DEBUG): Component order: CycleStarter,AHRS_M2,Depth_Keller,NAL9602,RDI_Pathfinder,DAT,BPC1,ESPComponent,PAR_Licor,Depth_Keller,PAR_Licor,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,YawRateCalculator,ElevatorOffsetCalculator,DeadReckonUsingMultipleVelocitySources,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2020-10-06T16:37:49.856Z,1602002269.856 [AHRS_M2](DEBUG): Initializing AHRS_M2.
2020-10-06T16:37:49.937Z,1602002269.937 [Radio_Surface](INFO): Powering up
2020-10-06T16:37:49.995Z,1602002269.995 [DAT](INFO): Powered 24V power converter LCB with command: ! echo 1 > /dev/loadB2
2020-10-06T16:37:49.995Z,1602002269.995 [DAT](INFO): Powering up
2020-10-06T16:37:49.996Z,1602002269.996 [DAT](DEBUG): Initializing DAT.
2020-10-06T16:37:50.065Z,1602002270.065 [CommandLine](IMPORTANT): got command ! echo 1 > /dev/loadB2
2020-10-06T16:37:50.279Z,1602002270.279 [BuoyancyServo](DEBUG): Initializing EZServoServo.
2020-10-06T16:37:50.285Z,1602002270.285 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2020-10-06T16:37:50.286Z,1602002270.286 [ElevatorServo](DEBUG): Initializing EZServoServo.
2020-10-06T16:37:50.297Z,1602002270.297 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2020-10-06T16:37:50.298Z,1602002270.298 [MassServo](DEBUG): Initializing EZServoServo.
2020-10-06T16:37:50.310Z,1602002270.310 [MassServo](DEBUG): Initializing MassServo.
2020-10-06T16:37:50.311Z,1602002270.311 [RudderServo](DEBUG): Initializing EZServoServo.
2020-10-06T16:37:50.317Z,1602002270.317 [RudderServo](DEBUG): Initializing RudderServo.
2020-10-06T16:37:50.318Z,1602002270.318 [ThrusterServo](DEBUG): Initializing EZServoServo.
2020-10-06T16:37:50.325Z,1602002270.325 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2020-10-06T16:37:56.597Z,1602002276.597 [CTD_Seabird](ERROR): Device message queue exceeded the allowed limit.
2020-10-06T16:37:59.701Z,1602002279.701 [CBIT](CRITICAL): Environmental Failure. Press:14.421388 PSI. Humidity:52%. Temp:20 C. ABORTING MISSION
2020-10-06T16:37:59.701Z,1602002279.701 [Supervisor](INFO): Stop Mission called by CBIT::monitorEnvironmentals
2020-10-06T16:38:00.102Z,1602002280.102 [CommandLine](FAULT): Scheduling is paused
2020-10-06T16:38:00.103Z,1602002280.103 [CBIT](INFO): Critical error at 20201006T163759
2020-10-06T16:38:04.084Z,1602002284.084 [DAT](INFO): commRate: 800
2020-10-06T16:38:06.113Z,1602002286.113 [DAT](INFO): entering command mode
2020-10-06T16:38:06.507Z,1602002286.507 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:06.910Z,1602002286.910 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:07.325Z,1602002287.325 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:07.729Z,1602002287.729 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:08.123Z,1602002288.123 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:08.537Z,1602002288.537 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:08.930Z,1602002288.930 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:09.334Z,1602002289.334 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:09.774Z,1602002289.774 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:10.142Z,1602002290.142 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:10.574Z,1602002290.574 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:10.950Z,1602002290.950 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:11.354Z,1602002291.354 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:11.770Z,1602002291.770 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:12.162Z,1602002292.162 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:12.581Z,1602002292.581 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:12.971Z,1602002292.971 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:13.371Z,1602002293.371 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:13.811Z,1602002293.811 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:14.179Z,1602002294.179 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:14.587Z,1602002294.587 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:15.028Z,1602002295.028 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:15.391Z,1602002295.391 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:15.795Z,1602002295.795 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:16.206Z,1602002296.206 [NAL9602](INFO): Powering up NAL9602
2020-10-06T16:38:16.218Z,1602002296.218 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:16.622Z,1602002296.622 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:17.010Z,1602002297.010 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:17.414Z,1602002297.414 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:17.833Z,1602002297.833 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:18.219Z,1602002298.219 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:18.653Z,1602002298.653 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:19.027Z,1602002299.027 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:19.436Z,1602002299.436 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:19.865Z,1602002299.865 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:20.239Z,1602002300.239 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:20.657Z,1602002300.657 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:20.726Z,1602002300.726 [CommandLine](IMPORTANT): got command show variable ubat
2020-10-06T16:38:20.733Z,1602002300.733 [CommandLine](IMPORTANT): WetLabsUBAT.enableUBAT (count)
2020-10-06T16:38:20.829Z,1602002300.829 [CommandLine](IMPORTANT): WetLabsUBAT.loadControl (none)
2020-10-06T16:38:20.830Z,1602002300.830 [CommandLine](IMPORTANT): WetLabsUBAT.uart (none)
2020-10-06T16:38:20.830Z,1602002300.830 [CommandLine](IMPORTANT): WetLabsUBAT.baud (bit_per_second)
2020-10-06T16:38:20.855Z,1602002300.855 [CommandLine](IMPORTANT): WetLabsUBAT.loadAtStartup (bool)
2020-10-06T16:38:20.855Z,1602002300.855 [CommandLine](IMPORTANT): WetLabsUBAT.simulateHardware (bool)
2020-10-06T16:38:20.855Z,1602002300.855 [CommandLine](IMPORTANT): WetLabsUBAT.serial (none)
2020-10-06T16:38:20.856Z,1602002300.856 [CommandLine](IMPORTANT): WetLabsUBAT.flowrateCalibCoeff (none_float)
2020-10-06T16:38:20.856Z,1602002300.856 [CommandLine](IMPORTANT): WetLabsUBAT.minFlowrate (liter_per_second)
2020-10-06T16:38:21.050Z,1602002301.050 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:21.097Z,1602002301.097 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:38:21.457Z,1602002301.457 [DAT](DEBUG): checking for command mode acknowledgment
2020-10-06T16:38:21.457Z,1602002301.457 [DAT](FAULT): failed to enter command mode
2020-10-06T16:38:21.884Z,1602002301.884 [DAT](INFO): entering command mode
2020-10-06T16:38:22.260Z,1602002302.260 [DAT](INFO): setting verbose to 3
2020-10-06T16:38:22.687Z,1602002302.687 [DAT](INFO): set verbose to 3
2020-10-06T16:38:22.687Z,1602002302.687 [DAT](INFO): setting DatVerbose to 27440
2020-10-06T16:38:23.075Z,1602002303.075 [DAT](INFO): set DatVerbose to 27440
2020-10-06T16:38:23.075Z,1602002303.075 [DAT](INFO): setting transmit power to 8
2020-10-06T16:38:23.149Z,1602002303.149 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:38:23.475Z,1602002303.475 [DAT](INFO): set transmit power to 8
2020-10-06T16:38:23.476Z,1602002303.476 [DAT](INFO): setting local address to 9
2020-10-06T16:38:23.880Z,1602002303.880 [DAT](INFO): set local address to 9
2020-10-06T16:38:27.110Z,1602002307.110 [NAL9602](INFO): NAL9602 initialized
2020-10-06T16:38:27.741Z,1602002307.741 [CommandLine](IMPORTANT): got command get WetLabsUBAT.loadAtStartup
2020-10-06T16:38:27.741Z,1602002307.741 [CommandLine](IMPORTANT): WetLabsUBAT.loadAtStartup 0 bool
2020-10-06T16:38:39.539Z,1602002319.539 [CommandLine](IMPORTANT): got command configSet WetLabsUBAT.loadAtStartup 1.000000 bool persist
2020-10-06T16:38:39.571Z,1602002319.571 [CommandLine](IMPORTANT): configSet WetLabsUBAT.loadAtStartup requires a restart to take effect.
2020-10-06T16:38:53.806Z,1602002333.806 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:38:55.445Z,1602002335.445 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:39:26.119Z,1602002366.119 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:39:27.785Z,1602002367.785 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:39:28.944Z,1602002368.944 [SBIT](IMPORTANT): Beginning Startup BIT
2020-10-06T16:39:28.948Z,1602002368.948 [CBIT](IMPORTANT): Beginning ground fault scan
2020-10-06T16:39:39.921Z,1602002379.921 [CBIT](IMPORTANT): No ground fault detected
mA:
CHAN A0 (Batt): 0.012175
CHAN A1 (24V): -0.000714
CHAN A2 (12V): -0.007236
CHAN A3 (5V): -0.002051
CHAN B0 (3.3V): -0.000248
CHAN B1 (3.15aV): -0.000355
CHAN B2 (3.15bV): 0.000075
CHAN B3 (GND): 0.001715
OPEN: 0.004980
Full Scale Calc: 4.765 mA, -1.589 mA
2020-10-06T16:39:58.437Z,1602002398.437 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:40:00.105Z,1602002400.105 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:40:18.055Z,1602002418.055 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.005162
2020-10-06T16:40:23.084Z,1602002423.084 [SBIT](IMPORTANT): SBIT PASSED
2020-10-06T16:40:23.085Z,1602002423.085 [SBIT](IMPORTANT): Listing configuration overrides from Data/persisted.cfg
2020-10-06T16:40:23.085Z,1602002423.085 [SBIT](IMPORTANT): AMEcho.loadAtStartup=0 bool;

2020-10-06T16:40:23.086Z,1602002423.086 [SBIT](IMPORTANT): BPC1.batteryMissingStickThreshold=6 count;

2020-10-06T16:40:23.086Z,1602002423.086 [SBIT](IMPORTANT): BuoyancyServo.loadAtStartup=1 bool;

2020-10-06T16:40:23.086Z,1602002423.086 [SBIT](IMPORTANT): CBIT.gf24Offset=145 microampere;

2020-10-06T16:40:23.086Z,1602002423.086 [SBIT](IMPORTANT): DAT.loadAtStartup=1 bool;

2020-10-06T16:40:23.086Z,1602002423.086 [SBIT](IMPORTANT): DAT.sbdAddress=-1 enum;

2020-10-06T16:40:23.086Z,1602002423.086 [SBIT](IMPORTANT): DAT.surfaceThreshold=100 meter;

2020-10-06T16:40:23.086Z,1602002423.086 [SBIT](IMPORTANT): DAT.verbosity=0 count;

2020-10-06T16:40:23.086Z,1602002423.086 [SBIT](IMPORTANT): DropWeight.loadAtStartup=0 bool;

2020-10-06T16:40:23.086Z,1602002423.086 [SBIT](IMPORTANT): ESPComponent.loadAtStartup=1 bool;

2020-10-06T16:40:23.087Z,1602002423.087 [SBIT](IMPORTANT): Express linearApproximation AMEcho.altitude 1.000000 meter;

2020-10-06T16:40:23.087Z,1602002423.087 [SBIT](IMPORTANT): Express none ThrusterServo.component_avgCurrent;

2020-10-06T16:40:23.087Z,1602002423.087 [SBIT](IMPORTANT): Express linearApproximation WetLabsUBAT.flow_rate 1.000000 liter_per_second;

2020-10-06T16:40:23.087Z,1602002423.087 [SBIT](IMPORTANT): Express linearApproximation height_above_sea_floor 5.000000 meter;

2020-10-06T16:40:23.087Z,1602002423.087 [SBIT](IMPORTANT): IBIT.batteryVoltageThreshold=13 volt;

2020-10-06T16:40:23.087Z,1602002423.087 [SBIT](IMPORTANT): PAR_Licor.loadAtStartup=1 bool;

2020-10-06T16:40:23.087Z,1602002423.087 [SBIT](IMPORTANT): RDI_Pathfinder.loadAtStartup=1 bool;

2020-10-06T16:40:23.087Z,1602002423.087 [SBIT](IMPORTANT): VerticalControl.buoyancyNeutral=170 cubic_centimeter;

2020-10-06T16:40:23.087Z,1602002423.087 [SBIT](IMPORTANT): VerticalControl.massDefault=20 millimeter;

2020-10-06T16:40:23.088Z,1602002423.088 [SBIT](IMPORTANT): WetLabsUBAT.loadAtStartup=1 bool;

2020-10-06T16:40:23.518Z,1602002423.518 [MissionManager](IMPORTANT): Started mission Startup
2020-10-06T16:40:23.518Z,1602002423.518 [Startup] Running Loop=1
2020-10-06T16:40:23.518Z,1602002423.518 [Startup](DEBUG): Aggregate::initialize Startup
2020-10-06T16:40:23.519Z,1602002423.519 [Startup:A.GoToSurface] Running Loop=1
2020-10-06T16:40:23.519Z,1602002423.519 [Startup:A.GoToSurface](DEBUG): Initialize GoToSurfaceComponent.
2020-10-06T16:40:23.519Z,1602002423.519 [Startup:A.GoToSurface](DEBUG): No depth rate setting specified. Using default value of nan m/s.
2020-10-06T16:40:23.520Z,1602002423.520 [Startup:A.GoToSurface](DEBUG): No pitch setting specified. Using default value of nan degrees.
2020-10-06T16:40:23.520Z,1602002423.520 [Startup:A.GoToSurface](DEBUG): No speed setting specified. Using default value of 1.000000 m/s.
2020-10-06T16:40:23.533Z,1602002423.533 [Startup:A.GoToSurface](DEBUG): No surface timeout specified. Using default value of 1000.000000 seconds.
2020-10-06T16:40:23.533Z,1602002423.533 [Startup:A.GoToSurface](INFO): Received pitch timeout configuration 60.000000 seconds.
2020-10-06T16:40:23.534Z,1602002423.534 [Startup:StartupSatComms] Running Loop=1
2020-10-06T16:40:23.534Z,1602002423.534 [Startup:StartupSatComms](DEBUG): Aggregate::initialize Startup:StartupSatComms
2020-10-06T16:40:23.535Z,1602002423.535 [Startup:StartupSatComms:A] Running Loop=1
2020-10-06T16:40:23.913Z,1602002423.913 [Startup:StartupSatComms:A](DEBUG): Initialize ReadDataComponent to sense latitude_fix
2020-10-06T16:40:30.788Z,1602002430.788 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:40:32.853Z,1602002432.853 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:40:49.808Z,1602002449.808 [DeadReckonUsingMultipleVelocitySources] Software Fault, FailCount= 1
2020-10-06T16:40:49.808Z,1602002449.808 [DeadReckonUsingMultipleVelocitySources](ERROR): Software Fault
2020-10-06T16:40:49.843Z,1602002449.843 [CBIT](ERROR): Software Fault in component: DeadReckonUsingMultipleVelocitySources
2020-10-06T16:40:50.198Z,1602002450.198 [CBIT](INFO): Clearing failed state for component DeadReckonUsingMultipleVelocitySources
2020-10-06T16:40:50.198Z,1602002450.198 [DeadReckonUsingMultipleVelocitySources] No Fault, FailCount= 1
2020-10-06T16:41:03.484Z,1602002463.484 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:41:05.129Z,1602002465.129 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:41:23.722Z,1602002483.722 [Startup:StartupSatComms:A](INFO): Timed out from 2020-10-06T16:40:23.5Z
2020-10-06T16:41:23.722Z,1602002483.722 [Startup:StartupSatComms:A] Stopped
2020-10-06T16:41:23.722Z,1602002483.722 [Startup:StartupSatComms:B] Running Loop=1
2020-10-06T16:41:24.115Z,1602002484.115 [Startup:StartupSatComms:B](DEBUG): Initialize ReadDataComponent to sense platform_communications
2020-10-06T16:41:27.640Z,1602002487.640 [DataOverHttps](INFO): Sending 167 bytes from file Logs/20201006T162919/Courier0004.lzma
2020-10-06T16:41:27.798Z,1602002487.798 [DataOverHttps](INFO): Moved sent file to Logs/20201006T162919/Courier0004.lzma.bak
2020-10-06T16:41:27.798Z,1602002487.798 [DataOverHttps](INFO): SBD MOMSN=12796824
2020-10-06T16:41:35.580Z,1602002495.580 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:41:37.625Z,1602002497.625 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:41:45.620Z,1602002505.620 [DataOverHttps](INFO): Sending 251 bytes from file Logs/20201006T163738/Courier0000.lzma
2020-10-06T16:41:46.610Z,1602002506.610 [DataOverHttps](INFO): Moved sent file to Logs/20201006T163738/Courier0000.lzma.bak
2020-10-06T16:41:46.610Z,1602002506.610 [DataOverHttps](INFO): SBD MOMSN=12796830
2020-10-06T16:42:08.375Z,1602002528.375 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:42:09.969Z,1602002529.969 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:42:14.288Z,1602002534.288 [DataOverHttps](INFO): Sending 2476 bytes from file Logs/20201006T162919/Express0005.lzma
2020-10-06T16:42:15.287Z,1602002535.287 [DataOverHttps](INFO): Moved sent file to Logs/20201006T162919/Express0005.lzma.bak
2020-10-06T16:42:15.287Z,1602002535.287 [DataOverHttps](INFO): SBD MOMSN=12796839
2020-10-06T16:42:24.031Z,1602002544.031 [Startup:StartupSatComms:B](INFO): Timed out from 2020-10-06T16:41:23.7Z
2020-10-06T16:42:24.031Z,1602002544.031 [Startup:StartupSatComms:B] Stopped
2020-10-06T16:42:24.032Z,1602002544.032 [Startup:StartupSatComms](INFO): Completed Startup:StartupSatComms
2020-10-06T16:42:24.032Z,1602002544.032 [Startup:StartupSatComms] Stopped
2020-10-06T16:42:24.032Z,1602002544.032 [Startup:StartupSatComms](DEBUG): Aggregate::uninitialize Startup:StartupSatComms
2020-10-06T16:42:24.033Z,1602002544.033 [Startup](INFO): Completed Startup
2020-10-06T16:42:24.033Z,1602002544.033 [MissionManager](INFO): Startup is completed.
2020-10-06T16:42:24.033Z,1602002544.033 [MissionManager](INFO): Uninitializing Mission Startup
2020-10-06T16:42:24.033Z,1602002544.033 [Startup] Stopped
2020-10-06T16:42:24.033Z,1602002544.033 [Startup](DEBUG): Aggregate::uninitialize Startup
2020-10-06T16:42:24.033Z,1602002544.033 [Startup:A.GoToSurface] Stopped
2020-10-06T16:42:24.033Z,1602002544.033 [Startup:A.GoToSurface](DEBUG): Uninitialize GoToSurfaceComponent.
2020-10-06T16:42:24.418Z,1602002544.418 [MissionManager](IMPORTANT): Started mission Default
2020-10-06T16:42:24.418Z,1602002544.418 [Default] Running Loop=1
2020-10-06T16:42:24.418Z,1602002544.418 [Default](DEBUG): Aggregate::initialize Default
2020-10-06T16:42:24.418Z,1602002544.418 [Default:B.GoToSurface] Running Loop=1
2020-10-06T16:42:24.418Z,1602002544.418 [Default:B.GoToSurface](DEBUG): Initialize GoToSurfaceComponent.
2020-10-06T16:42:24.418Z,1602002544.418 [Default:B.GoToSurface](DEBUG): No depth rate setting specified. Using default value of nan m/s.
2020-10-06T16:42:24.419Z,1602002544.419 [Default:B.GoToSurface](DEBUG): No pitch setting specified. Using default value of nan degrees.
2020-10-06T16:42:24.419Z,1602002544.419 [Default:B.GoToSurface](DEBUG): No speed setting specified. Using default value of 1.000000 m/s.
2020-10-06T16:42:24.419Z,1602002544.419 [Default:B.GoToSurface](DEBUG): No surface timeout specified. Using default value of 1000.000000 seconds.
2020-10-06T16:42:24.420Z,1602002544.420 [Default:B.GoToSurface](INFO): Received pitch timeout configuration 60.000000 seconds.
2020-10-06T16:42:24.420Z,1602002544.420 [Default:A.Wait] Running Loop=1
2020-10-06T16:42:24.420Z,1602002544.420 [Default:A.Wait](DEBUG): Initialize Wait Component.
2020-10-06T16:42:32.966Z,1602002552.966 [CommandLine](IMPORTANT): got command run ./Missions/Insert/Science.xml
2020-10-06T16:42:32.966Z,1602002552.966 [MissionManager](INFO): Loading Mission: ./Missions/Insert/Science.xml
2020-10-06T16:42:33.123Z,1602002553.123 [MissionManager](INFO): DefineArg Science.PeakDetectChlActive = 0 bool
2020-10-06T16:42:33.126Z,1602002553.126 [MissionManager](INFO): DefineArg Science.TimeWindowPeakReport = nan min
2020-10-06T16:42:33.129Z,1602002553.129 [MissionManager](INFO): DefineArg Science.HighestChlPeakReportActive = 0 bool
2020-10-06T16:42:33.132Z,1602002553.132 [MissionManager](INFO): DefineArg Science.PatchTracking = 0 bool
2020-10-06T16:42:33.135Z,1602002553.135 [MissionManager](INFO): DefineArg Science.FilterWidthHorizontal = 3.000000 count
2020-10-06T16:42:33.138Z,1602002553.138 [MissionManager](INFO): DefineArg Science.NumProfilesSlidingwindow = 100.000000 count
2020-10-06T16:42:33.141Z,1602002553.141 [MissionManager](INFO): DefineArg Science.OffPeakFractionHorizontal = 80.000000 %
2020-10-06T16:42:33.144Z,1602002553.144 [MissionManager](INFO): DefineArg Science.PeakDetectNO3Active = 0 bool
2020-10-06T16:42:33.147Z,1602002553.147 [MissionManager](INFO): DefineArg Science.PeakDetectOilActive = 0 bool
2020-10-06T16:42:33.150Z,1602002553.150 [MissionManager](INFO): DefineArg Science.PeakDetectFDOMActive = 0 bool
2020-10-06T16:42:33.153Z,1602002553.153 [MissionManager](INFO): DefineArg Science.UpwardDerivativeOfTemperatureActive = 0 bool
2020-10-06T16:42:33.182Z,1602002553.182 [DataOverHttps](INFO): Sending 1410 bytes from file Logs/20201006T163738/Express0001.lzma
2020-10-06T16:42:33.202Z,1602002553.202 [MissionManager](INFO): DefineArg Science.EnabledAanderaaO2 = 0.000000 bool
2020-10-06T16:42:33.206Z,1602002553.206 [MissionManager](INFO): DefineArg Science.EnabledNeilBrown = 0.000000 bool
2020-10-06T16:42:33.229Z,1602002553.229 [MissionManager](INFO): DefineArg Science.EnabledSeabird = 1.000000 bool
2020-10-06T16:42:33.241Z,1602002553.241 [MissionManager](INFO): DefineArg Science.EnabledWetLabsBB2FL = 1.000000 bool
2020-10-06T16:42:33.249Z,1602002553.249 [MissionManager](INFO): DefineArg Science.EnabledWetLabsSeaOWL_UV_A = 0.000000 bool
2020-10-06T16:42:33.257Z,1602002553.257 [MissionManager](INFO): DefineArg Science.EnabledWetLabsUBAT = 1.000000 bool
2020-10-06T16:42:33.260Z,1602002553.260 [MissionManager](INFO): DefineArg Science.LowPassWindowLength = 20.000000 count
2020-10-06T16:42:33.271Z,1602002553.271 [MissionManager](INFO): DefineArg Science.MedianFilterLen = 5.000000 count
2020-10-06T16:42:33.274Z,1602002553.274 [MissionManager](INFO): DefineArg Science.PeakChlShallowBound = nan m
2020-10-06T16:42:33.277Z,1602002553.277 [MissionManager](INFO): DefineArg Science.PeakChlDeepBound = nan m
2020-10-06T16:42:33.316Z,1602002553.316 [MissionManager](INFO): DefineArg Science.PeakShallowBound = nan m
2020-10-06T16:42:33.319Z,1602002553.319 [MissionManager](INFO): DefineArg Science.PeakDeepBound = nan m
2020-10-06T16:42:33.338Z,1602002553.338 [MissionManager](INFO): DefineOutput Science.PeakChl = 0.000000 ug/l
2020-10-06T16:42:33.345Z,1602002553.345 [MissionManager](INFO): DefineOutput Science.PeakChlDepth = 0.000000 m
2020-10-06T16:42:33.356Z,1602002553.356 [MissionManager](INFO): DefineOutput Science.PeakChlTemperature = 0.000000 degC
2020-10-06T16:42:33.360Z,1602002553.360 [MissionManager](INFO): DefineOutput Science.PeakChlLatitude = nan arcdeg
2020-10-06T16:42:33.371Z,1602002553.371 [MissionManager](INFO): DefineOutput Science.PeakChlLongitude = nan arcdeg
2020-10-06T16:42:33.375Z,1602002553.375 [MissionManager](INFO): DefineOutput Science.PeakNO3 = 0.000000 umol/l
2020-10-06T16:42:33.391Z,1602002553.391 [MissionManager](INFO): DefineOutput Science.PeakNO3Depth = 0.000000 m
2020-10-06T16:42:33.404Z,1602002553.404 [MissionManager](INFO): DefineOutput Science.PeakNO3Latitude = nan arcdeg
2020-10-06T16:42:33.411Z,1602002553.411 [MissionManager](INFO): DefineOutput Science.PeakNO3Longitude = nan arcdeg
2020-10-06T16:42:33.419Z,1602002553.419 [MissionManager](INFO): DefineOutput Science.PatchChl = 0.000000 m
2020-10-06T16:42:33.423Z,1602002553.423 [MissionManager](INFO): DefineOutput Science.PatchChlDepth = 0.000000 m
2020-10-06T16:42:33.443Z,1602002553.443 [MissionManager](INFO): DefineOutput Science.PatchChlLatitude = nan arcdeg
2020-10-06T16:42:33.447Z,1602002553.447 [MissionManager](INFO): DefineOutput Science.PatchChlLongitude = nan arcdeg
2020-10-06T16:42:33.462Z,1602002553.462 [MissionManager](INFO): DefineOutput Science.PatchChlDistance = nan m
2020-10-06T16:42:33.469Z,1602002553.469 [MissionManager](INFO): DefineOutput Science.PeakOil = 0.000000 kg/m3
2020-10-06T16:42:33.481Z,1602002553.481 [MissionManager](INFO): DefineOutput Science.PeakOilDepth = 0.000000 m
2020-10-06T16:42:33.503Z,1602002553.503 [MissionManager](INFO): DefineOutput Science.PeakOilLatitude = nan arcdeg
2020-10-06T16:42:33.507Z,1602002553.507 [MissionManager](INFO): DefineOutput Science.PeakOilLongitude = nan arcdeg
2020-10-06T16:42:33.510Z,1602002553.510 [MissionManager](INFO): DefineOutput Science.PeakFDOM = 0.000000 ppb
2020-10-06T16:42:33.518Z,1602002553.518 [MissionManager](INFO): DefineOutput Science.PeakFDOMDepth = 0.000000 m
2020-10-06T16:42:33.559Z,1602002553.559 [MissionManager](INFO): DefineOutput Science.PeakFDOMLatitude = nan arcdeg
2020-10-06T16:42:33.568Z,1602002553.568 [MissionManager](INFO): DefineOutput Science.PeakFDOMLongitude = nan arcdeg
2020-10-06T16:42:33.573Z,1602002553.573 [MissionManager](INFO): DefineOutput Science.PatchFDOMDistance = nan m
2020-10-06T16:42:33.676Z,1602002553.676 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-10-06T16:42:33.723Z,1602002553.723 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](DEBUG): Construct PeakDetectHorizontal.
2020-10-06T16:42:33.762Z,1602002553.762 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-10-06T16:42:33.799Z,1602002553.799 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-10-06T16:42:33.829Z,1602002553.829 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-10-06T16:42:33.895Z,1602002553.895 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<!-- ====================
     Generated by TethysL
     ==================== -->
<Aggregate xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
           xmlns="Tethys"
           xmlns:Units="Tethys/Units"
           xmlns:Science="Tethys/Science"
           xmlns:Universal="Tethys/Universal"
           xmlns:Trigger="Tethys/Trigger"
           xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                               Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                               Tethys/Science http://okeanids.mbari.org/tethys/Xml/Science.xsd
                               Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd
                               Tethys/Trigger http://okeanids.mbari.org/tethys/Xml/Trigger.xsd"
       Id="Science">

    <DefineArg Name="PeakDetectChlActive"><Description>
        Turns on peak detection of Cholorphyll.
    </Description><False/></DefineArg>

    <DefineArg Name="TimeWindowPeakReport"><Description>
        If greater than zero, report a peak every window. If NaN or zero, this
        variable is ignored.
    </Description><Units:minute/><Value>NaN</Value></DefineArg>

    <DefineArg Name="HighestChlPeakReportActive"><Description>
        Turns on reporting of the highest peak value on yo-yo profiles in a
        horizontal sliding window (of length numProfilesSlidingwindow)
    </Description><False/></DefineArg>

    <DefineArg Name="PatchTracking"><Description>
        If tracking a patch
    </Description><False/></DefineArg>

    <DefineArg Name="FilterWidthHorizontal"><Description>
        Width of boxcar filter applied to yoyo-wise chl peaks to pick out the
        highest peak.
    </Description><Units:count/><Value>3</Value></DefineArg>

    <DefineArg Name="NumProfilesSlidingwindow"><Description>
        Length of horizontal sliding window. The highest yoyo-wise chl peak
        (after low-pass filtering by a filter of length FilterWidthHorizontal)
        within this window.
    </Description><Units:count/><Value>100</Value></DefineArg>

    <DefineArg Name="OffPeakFractionHorizontal"><Description>
        When filtered horizontal value is this fraction of the peak, consider it
        outside the patch.
    </Description><Units:percent/><Value>80</Value></DefineArg>

    <DefineArg Name="PeakDetectNO3Active"><Description>
        Turns on peak detection of Nitrate (and turns on ISUS).
    </Description><False/></DefineArg>

    <DefineArg Name="PeakDetectOilActive"><Description>
        Turns on peak detection of Dissolved Oil.
    </Description><False/></DefineArg>

    <DefineArg Name="PeakDetectFDOMActive"><Description>
        Turns on peak detection of concentration_of_chromophoric_dissolved_organic_matter_in_sea_water from FDOM sensor.
    </Description><False/></DefineArg>
    
    <DefineArg Name="UpwardDerivativeOfTemperatureActive"><Description>
        Turns on seawater temperature derivative.
    </Description><False/></DefineArg>

    <DefineArg Name="EnabledAanderaaO2"><Description>
        Automatically set to True if the Aanderaa O2 sensor is installed. Set to
        false to disable reading Aandera O2.
    </Description><Science:Aanderaa_O2.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledNeilBrown"><Description>
        Automatically set to true if the Neil Brown CTD is enabled. Set to false
        to disable reading from the Neil Brown.
    </Description><Science:CTD_NeilBrown.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledSeabird"><Description>
        Automatically set to true if the CTD is enabled. Set to false to disable
        reading from the CTD.
    </Description><Science:CTD_Seabird.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsBB2FL"><Description>
        Automatically set to true if the the WetLabs BB2FL is enabled. Set to
        false to disable the WetLabs BB2FL.
    </Description><Science:WetLabsBB2FL.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsSeaOWL_UV_A"><Description>
        Automatically set to true if the the WetLabs SeaOWL UV-A is enabled. Set
        to false to disable the WetLabs SeaOWL UV-A.
    </Description><Science:WetLabsSeaOWL_UV_A.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsUBAT"><Description>
        Automatically set to true if the the WetLabs UBAT is enabled. Set
        to false to disable the WetLabs UBAT.
    </Description><Science:WetLabsUBAT.loadAtStartup/></DefineArg>

    <DefineArg Name="LowPassWindowLength"><Description>
        Low-pass window length (based on depth sensor sampling interval 0.4
        second) for low-pass filtering.
    </Description><Units:count/><Value>20</Value></DefineArg>

    <DefineArg Name="MedianFilterLen"><Description>
        Median filter length (only for chlorophyll fluorescence which tends to have spikes)
    </Description><Units:count/><Value>5</Value></DefineArg>

    <DefineArg Name="PeakChlShallowBound"><Description>
        Shallow depth bound for detecting chl peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineArg Name="PeakChlDeepBound"><Description>
        Deep depth bound for detecting chl peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineArg Name="PeakShallowBound"><Description>
        Shallow depth bound for detecting any peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineArg Name="PeakDeepBound"><Description>
        Deep depth bound for detecting any peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineOutput Name="PeakChl"><Units:microgram_per_liter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlTemperature"><Units:celsius/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakChlLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakNO3"><Units:micromole_per_liter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Depth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Latitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Longitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChl"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PatchChlDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PatchChlLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChlLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChlDistance"><Units:meter/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakOil"><Units:kilogram_per_cubic_meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakOilDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakOilLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakOilLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakFDOM"><Units:part_per_billion/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>
    
    <DefineOutput Name="PatchFDOMDistance"><Units:meter/><Value>NaN</Value></DefineOutput>    
    
    <Parallel/>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledAanderaaO2"/>
        </While>
        <Universal:mass_concentration_of_oxygen_in_sea_water/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledNeilBrown"/>
            <Or><Arg Name="EnabledSeabird"/></Or>
        </While>
        <Universal:sea_water_temperature/>
        <Universal:sea_water_salinity/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledSeabird"/>
        </While>
        <Science:CTD_Seabird.sea_water_temperature/>
        <Science:CTD_Seabird.sea_water_salinity/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledNeilBrown"/>
            <Or><Arg Name="EnabledSeabird"/></Or>
            <And><Arg Name="UpwardDerivativeOfTemperatureActive"/></And>
        </While>
        <Universal:upward_derivative_of_sea_water_temperature/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsBB2FL"/>
            <Or><Arg Name="PeakDetectChlActive"/></Or>
        </While>
        <Universal:mass_concentration_of_chlorophyll_in_sea_water/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsUBAT"/>
        </While>
        <Science:WetLabsUBAT.biolum_potential/>
    </ReadData>

    <ReadData Id="Read_Oil" Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsSeaOWL_UV_A"/>
            <Or><Arg Name="PeakDetectOilActive"/></Or>
        </While>
        <Universal:mass_concentration_of_chlorophyll_in_sea_water/>
    </ReadData>

    <Aggregate Id="OceanCurrent">
        <Estimation:CurrentEstimator>
            <Parallel/>
        </Estimation:CurrentEstimator>	
    </Aggregate>    	

    <Aggregate Id="PeakDetectChl">

        <While>
            <Arg Name="PeakDetectChlActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mass_concentration_of_chlorophyll_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.medianFilterLength/><Arg Name="MedianFilterLen"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakChlShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakChlDeepBound"/></Setting>
            <OutputArg Name="PeakChl"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakChlDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakChlTemperature"><Trigger:PeakDetectVsDepth.peakTemperature/></OutputArg>
            <OutputArg Name="PeakChlLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakChlLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

<!--debug
        <Syslog Severity="Important">PeakChl, PeakChlLatitude, PeakChlLongitude = <Arg Name="PeakChl"/><Units:microgram_per_liter/>, <Arg Name="PeakChlLatitude"/><Units:degree/>, <Arg Name="PeakChlLongitude"/><Units:degree/></Syslog>
-->

        <SendData Service="Express"><Arg Name="PeakChl"/><Arg Name="PeakChlDepth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="HighestChlPeakReport">

        <While>
            <Arg Name="HighestChlPeakReportActive"/>
        </While>

        <Trigger:PeakDetectHorizontal>
            <Sequence/>
            <Setting><Trigger:PeakDetectHorizontal.detectFrom/><Arg Name="PeakChl"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.depthFrom/><Arg Name="PeakChlDepth"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.latitudeFrom/><Arg Name="PeakChlLatitude"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.longitudeFrom/><Arg Name="PeakChlLongitude"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.patchTracking/><Arg Name="PatchTracking"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.filterWidth/><Arg Name="FilterWidthHorizontal"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.numProfilesSlidingwindow/><Arg Name="NumProfilesSlidingwindow"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.offPeakFraction/><Arg Name="OffPeakFractionHorizontal"/></Setting>
            <OutputArg Name="PatchChl"><Trigger:PeakDetectHorizontal.peakDetect/></OutputArg>
            <OutputArg Name="PatchChlDepth"><Trigger:PeakDetectHorizontal.peakDepth/></OutputArg>
            <OutputArg Name="PatchChlLatitude"><Trigger:PeakDetectHorizontal.peakLatitude/></OutputArg>
            <OutputArg Name="PatchChlLongitude"><Trigger:PeakDetectHorizontal.peakLongitude/></OutputArg>
            <OutputArg Name="PatchChlDistance"><Trigger:PeakDetectHorizontal.peakDistance/></OutputArg>
        </Trigger:PeakDetectHorizontal>

    </Aggregate>

    <Aggregate Id="PeakDetectNO3">

        <While>
            <Arg Name="PeakDetectNO3Active"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mole_concentration_of_nitrate_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakNO3"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakNO3Depth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakNO3Latitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakNO3Longitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakNO3"/><Arg Name="PeakNO3Depth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="PeakDetectOil">

        <While>
            <Arg Name="PeakDetectOilActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mass_concentration_of_petroleum_hydrocarbons_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakOil"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakOilDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakOilLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakOilLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakOil"/><Arg Name="PeakOilDepth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="PeakDetectFDOM">

        <While>
            <Arg Name="PeakDetectFDOMActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:concentration_of_chromophoric_dissolved_organic_matter_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakFDOM"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakFDOMDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakFDOMTemperature"><Trigger:PeakDetectVsDepth.peakTemperature/></OutputArg>
            <OutputArg Name="PeakFDOMLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakFDOMLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakFDOM"/><Arg Name="PeakFDOMDepth"/>
        </SendData>

    </Aggregate>

</Aggregate>


2020-10-06T16:42:33.906Z,1602002553.906 [CommandLine](IMPORTANT): Running ./Missions/Insert/Science.xml
2020-10-06T16:42:34.130Z,1602002554.130 [Default] Stopped
2020-10-06T16:42:34.130Z,1602002554.130 [Default](DEBUG): Aggregate::uninitialize Default
2020-10-06T16:42:34.130Z,1602002554.130 [Default:A.Wait] Stopped
2020-10-06T16:42:34.130Z,1602002554.130 [Default:A.Wait](DEBUG): Uninitialize Wait Component.
2020-10-06T16:42:34.130Z,1602002554.130 [Default:B.GoToSurface] Stopped
2020-10-06T16:42:34.130Z,1602002554.130 [Default:B.GoToSurface](DEBUG): Uninitialize GoToSurfaceComponent.
2020-10-06T16:42:34.131Z,1602002554.131 [MissionManager](IMPORTANT): Started mission Science
2020-10-06T16:42:34.131Z,1602002554.131 [Science] Running Loop=1
2020-10-06T16:42:34.131Z,1602002554.131 [Science](DEBUG): Aggregate::initialize Science
2020-10-06T16:42:34.131Z,1602002554.131 [Science:A] Running Loop=1
2020-10-06T16:42:34.131Z,1602002554.131 [Science:B] Running Loop=1
2020-10-06T16:42:34.131Z,1602002554.131 [Science:C] Running Loop=1
2020-10-06T16:42:34.131Z,1602002554.131 [Science:D] Running Loop=1
2020-10-06T16:42:34.132Z,1602002554.132 [Science:E] Running Loop=1
2020-10-06T16:42:34.132Z,1602002554.132 [Science:F] Running Loop=1
2020-10-06T16:42:34.132Z,1602002554.132 [Science:Read_Oil] Running Loop=1
2020-10-06T16:42:34.132Z,1602002554.132 [Science:PeakDetectChl] Running Loop=1
2020-10-06T16:42:34.132Z,1602002554.132 [Science:PeakDetectChl](DEBUG): Aggregate::initialize Science:PeakDetectChl
2020-10-06T16:42:34.132Z,1602002554.132 [Science:PeakDetectChl:A.PeakDetectVsDepth] Running Loop=1
2020-10-06T16:42:34.140Z,1602002554.140 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-10-06T16:42:34.142Z,1602002554.142 [Science:HighestChlPeakReport] Running Loop=1
2020-10-06T16:42:34.142Z,1602002554.142 [Science:HighestChlPeakReport](DEBUG): Aggregate::initialize Science:HighestChlPeakReport
2020-10-06T16:42:34.142Z,1602002554.142 [Science:HighestChlPeakReport:A.PeakDetectHorizontal] Running Loop=1
2020-10-06T16:42:34.142Z,1602002554.142 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](INFO): Initialize.
2020-10-06T16:42:34.143Z,1602002554.143 [Science:PeakDetectNO3] Running Loop=1
2020-10-06T16:42:34.143Z,1602002554.143 [Science:PeakDetectNO3](DEBUG): Aggregate::initialize Science:PeakDetectNO3
2020-10-06T16:42:34.143Z,1602002554.143 [Science:PeakDetectNO3:A.PeakDetectVsDepth] Running Loop=1
2020-10-06T16:42:34.143Z,1602002554.143 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-10-06T16:42:34.146Z,1602002554.146 [Science:PeakDetectOil] Running Loop=1
2020-10-06T16:42:34.146Z,1602002554.146 [Science:PeakDetectOil](DEBUG): Aggregate::initialize Science:PeakDetectOil
2020-10-06T16:42:34.146Z,1602002554.146 [Science:PeakDetectOil:A.PeakDetectVsDepth] Running Loop=1
2020-10-06T16:42:34.146Z,1602002554.146 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-10-06T16:42:34.148Z,1602002554.148 [Science:PeakDetectFDOM] Running Loop=1
2020-10-06T16:42:34.148Z,1602002554.148 [Science:PeakDetectFDOM](DEBUG): Aggregate::initialize Science:PeakDetectFDOM
2020-10-06T16:42:34.148Z,1602002554.148 [Science:PeakDetectFDOM:A.PeakDetectVsDepth] Running Loop=1
2020-10-06T16:42:34.148Z,1602002554.148 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-10-06T16:42:34.162Z,1602002554.162 [Science:OceanCurrent] Running Loop=1
2020-10-06T16:42:34.163Z,1602002554.163 [Science:OceanCurrent](DEBUG): Aggregate::initialize Science:OceanCurrent
2020-10-06T16:42:34.163Z,1602002554.163 [Science:OceanCurrent:A.] Running Loop=1
2020-10-06T16:42:34.163Z,1602002554.163 [Science:OceanCurrent:A.](INFO): Initializing CurrentEstimator.
2020-10-06T16:42:34.164Z,1602002554.164 [Science:PeakDetectFDOM] Stopped
2020-10-06T16:42:34.164Z,1602002554.164 [Science:PeakDetectFDOM](DEBUG): Aggregate::uninitialize Science:PeakDetectFDOM
2020-10-06T16:42:34.164Z,1602002554.164 [Science:PeakDetectFDOM:A.PeakDetectVsDepth] Stopped
2020-10-06T16:42:34.166Z,1602002554.166 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-10-06T16:42:34.167Z,1602002554.167 [Science:PeakDetectOil] Stopped
2020-10-06T16:42:34.167Z,1602002554.167 [Science:PeakDetectOil](DEBUG): Aggregate::uninitialize Science:PeakDetectOil
2020-10-06T16:42:34.167Z,1602002554.167 [Science:PeakDetectOil:A.PeakDetectVsDepth] Stopped
2020-10-06T16:42:34.167Z,1602002554.167 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-10-06T16:42:34.167Z,1602002554.167 [Science:PeakDetectNO3] Stopped
2020-10-06T16:42:34.167Z,1602002554.167 [Science:PeakDetectNO3](DEBUG): Aggregate::uninitialize Science:PeakDetectNO3
2020-10-06T16:42:34.167Z,1602002554.167 [Science:PeakDetectNO3:A.PeakDetectVsDepth] Stopped
2020-10-06T16:42:34.167Z,1602002554.167 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-10-06T16:42:34.167Z,1602002554.167 [Science:HighestChlPeakReport] Stopped
2020-10-06T16:42:34.167Z,1602002554.167 [Science:HighestChlPeakReport](DEBUG): Aggregate::uninitialize Science:HighestChlPeakReport
2020-10-06T16:42:34.167Z,1602002554.167 [Science:HighestChlPeakReport:A.PeakDetectHorizontal] Stopped
2020-10-06T16:42:34.167Z,1602002554.167 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](DEBUG): Uninitialize.
2020-10-06T16:42:34.167Z,1602002554.167 [Science:PeakDetectChl] Stopped
2020-10-06T16:42:34.168Z,1602002554.168 [Science:PeakDetectChl](DEBUG): Aggregate::uninitialize Science:PeakDetectChl
2020-10-06T16:42:34.168Z,1602002554.168 [Science:PeakDetectChl:A.PeakDetectVsDepth] Stopped
2020-10-06T16:42:34.168Z,1602002554.168 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-10-06T16:42:34.168Z,1602002554.168 [Science:OceanCurrent:A.] Running Loop=1
2020-10-06T16:42:34.182Z,1602002554.182 [DataOverHttps](INFO): Moved sent file to Logs/20201006T163738/Express0001.lzma.bak
2020-10-06T16:42:34.182Z,1602002554.182 [DataOverHttps](INFO): SBD MOMSN=12797025
2020-10-06T16:42:34.188Z,1602002554.188 [Science:Read_Oil] Stopped
2020-10-06T16:42:34.188Z,1602002554.188 [Science:F] Running Loop=1
2020-10-06T16:42:34.189Z,1602002554.189 [Science:F](CRITICAL): Unable to read non-existent URI:WetLabsUBAT.biolum_potential
2020-10-06T16:42:34.189Z,1602002554.189 [Science:F](CRITICAL): Unable to read non-existent data element: WetLabsUBAT.biolum_potential
2020-10-06T16:42:34.189Z,1602002554.189 [Science:E] Running Loop=1
2020-10-06T16:42:34.190Z,1602002554.190 [Science:E](DEBUG): Initialize ReadDataComponent to sense mass_concentration_of_chlorophyll_in_sea_water
2020-10-06T16:42:34.190Z,1602002554.190 [Science:D] Stopped
2020-10-06T16:42:34.190Z,1602002554.190 [Science:C] Running Loop=1
2020-10-06T16:42:34.190Z,1602002554.190 [Science:C](DEBUG): Initialize ReadDataComponent to sense CTD_Seabird.sea_water_temperature
2020-10-06T16:42:34.191Z,1602002554.191 [Science:C](DEBUG): Initialize ReadDataComponent to sense CTD_Seabird.sea_water_salinity
2020-10-06T16:42:34.191Z,1602002554.191 [Science:B] Running Loop=1
2020-10-06T16:42:34.192Z,1602002554.192 [Science:B](DEBUG): Initialize ReadDataComponent to sense sea_water_temperature
2020-10-06T16:42:34.193Z,1602002554.193 [Science:B](DEBUG): Initialize ReadDataComponent to sense sea_water_salinity
2020-10-06T16:42:34.193Z,1602002554.193 [Science:A] Stopped
2020-10-06T16:42:34.208Z,1602002554.208 [CBIT](INFO): Critical error at 20201006T164234
2020-10-06T16:42:34.209Z,1602002554.209 [Supervisor](INFO): Stop Mission called by CBIT::checkCriticals
2020-10-06T16:42:34.454Z,1602002554.454 [WetLabsBB2FL](INFO): Powering up
2020-10-06T16:42:34.546Z,1602002554.546 [Science:F](CRITICAL): Unable to read non-existent URI:WetLabsUBAT.biolum_potential
2020-10-06T16:42:34.547Z,1602002554.547 [Science:F](CRITICAL): Unable to read non-existent data element: WetLabsUBAT.biolum_potential
2020-10-06T16:42:34.547Z,1602002554.547 [MissionManager](INFO): MissionManager is completed.
2020-10-06T16:42:34.547Z,1602002554.547 [MissionManager](INFO): Uninitializing Mission Science
2020-10-06T16:42:34.547Z,1602002554.547 [Science] Stopped
2020-10-06T16:42:34.547Z,1602002554.547 [Science](DEBUG): Aggregate::uninitialize Science
2020-10-06T16:42:34.547Z,1602002554.547 [Science:B] Stopped
2020-10-06T16:42:34.547Z,1602002554.547 [Science:C] Stopped
2020-10-06T16:42:34.547Z,1602002554.547 [Science:E] Stopped
2020-10-06T16:42:34.547Z,1602002554.547 [Science:F] Stopped
2020-10-06T16:42:34.547Z,1602002554.547 [Science:OceanCurrent] Stopped
2020-10-06T16:42:34.548Z,1602002554.548 [Science:OceanCurrent](DEBUG): Aggregate::uninitialize Science:OceanCurrent
2020-10-06T16:42:34.548Z,1602002554.548 [Science:OceanCurrent:A.] Stopped
2020-10-06T16:42:34.599Z,1602002554.599 [CBIT](INFO): Critical error at 20201006T164234
2020-10-06T16:42:34.942Z,1602002554.942 [MissionManager](IMPORTANT): Started mission Default
2020-10-06T16:42:34.942Z,1602002554.942 [Default] Running Loop=1
2020-10-06T16:42:34.942Z,1602002554.942 [Default](DEBUG): Aggregate::initialize Default
2020-10-06T16:42:34.942Z,1602002554.942 [Default:B.GoToSurface] Running Loop=1
2020-10-06T16:42:34.942Z,1602002554.942 [Default:B.GoToSurface](DEBUG): Initialize GoToSurfaceComponent.
2020-10-06T16:42:34.943Z,1602002554.943 [Default:B.GoToSurface](DEBUG): No depth rate setting specified. Using default value of nan m/s.
2020-10-06T16:42:34.943Z,1602002554.943 [Default:B.GoToSurface](DEBUG): No pitch setting specified. Using default value of nan degrees.
2020-10-06T16:42:34.943Z,1602002554.943 [Default:B.GoToSurface](DEBUG): No speed setting specified. Using default value of 1.000000 m/s.
2020-10-06T16:42:34.943Z,1602002554.943 [Default:B.GoToSurface](DEBUG): No surface timeout specified. Using default value of 1000.000000 seconds.
2020-10-06T16:42:34.944Z,1602002554.944 [Default:B.GoToSurface](INFO): Received pitch timeout configuration 60.000000 seconds.
2020-10-06T16:42:34.944Z,1602002554.944 [Default:A.Wait] Running Loop=1
2020-10-06T16:42:34.944Z,1602002554.944 [Default:A.Wait](DEBUG): Initialize Wait Component.
2020-10-06T16:42:37.068Z,1602002557.068 [WetLabsBB2FL](INFO): Powering down
2020-10-06T16:42:40.614Z,1602002560.614 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:42:42.249Z,1602002562.249 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:42:48.283Z,1602002568.283 [Default:A.Wait](INFO): Done Waiting.
2020-10-06T16:42:48.283Z,1602002568.283 [Default:A.Wait] Stopped
2020-10-06T16:42:48.284Z,1602002568.284 [Default:A.Wait](DEBUG): Uninitialize Wait Component.
2020-10-06T16:42:48.737Z,1602002568.737 [Default:CheckIn] Running Loop=1
2020-10-06T16:42:48.737Z,1602002568.737 [Default:CheckIn](DEBUG): Aggregate::initialize Default:CheckIn
2020-10-06T16:42:48.737Z,1602002568.737 [Default:CheckIn:Read_GPS] Running Loop=1
2020-10-06T16:42:49.255Z,1602002569.255 [Default:CheckIn:Read_GPS](DEBUG): Initialize ReadDataComponent to sense time_fix
2020-10-06T16:42:56.574Z,1602002576.574 [CommandLine](IMPORTANT): got command run ./Missions/Insert/Science.xml
2020-10-06T16:42:56.575Z,1602002576.575 [MissionManager](INFO): Loading Mission: ./Missions/Insert/Science.xml
2020-10-06T16:42:56.790Z,1602002576.790 [MissionManager](INFO): DefineArg Science.PeakDetectChlActive = 0 bool
2020-10-06T16:42:56.791Z,1602002576.791 [MissionManager](INFO): DefineArg Science.TimeWindowPeakReport = nan min
2020-10-06T16:42:56.798Z,1602002576.798 [MissionManager](INFO): DefineArg Science.HighestChlPeakReportActive = 0 bool
2020-10-06T16:42:56.799Z,1602002576.799 [MissionManager](INFO): DefineArg Science.PatchTracking = 0 bool
2020-10-06T16:42:56.810Z,1602002576.810 [MissionManager](INFO): DefineArg Science.FilterWidthHorizontal = 3.000000 count
2020-10-06T16:42:56.812Z,1602002576.812 [MissionManager](INFO): DefineArg Science.NumProfilesSlidingwindow = 100.000000 count
2020-10-06T16:42:56.834Z,1602002576.834 [MissionManager](INFO): DefineArg Science.OffPeakFractionHorizontal = 80.000000 %
2020-10-06T16:42:56.836Z,1602002576.836 [MissionManager](INFO): DefineArg Science.PeakDetectNO3Active = 0 bool
2020-10-06T16:42:56.842Z,1602002576.842 [MissionManager](INFO): DefineArg Science.PeakDetectOilActive = 0 bool
2020-10-06T16:42:56.852Z,1602002576.852 [MissionManager](INFO): DefineArg Science.PeakDetectFDOMActive = 0 bool
2020-10-06T16:42:56.866Z,1602002576.866 [MissionManager](INFO): DefineArg Science.UpwardDerivativeOfTemperatureActive = 0 bool
2020-10-06T16:42:56.877Z,1602002576.877 [MissionManager](INFO): DefineArg Science.EnabledAanderaaO2 = 0.000000 bool
2020-10-06T16:42:56.879Z,1602002576.879 [MissionManager](INFO): DefineArg Science.EnabledNeilBrown = 0.000000 bool
2020-10-06T16:42:56.887Z,1602002576.887 [MissionManager](INFO): DefineArg Science.EnabledSeabird = 1.000000 bool
2020-10-06T16:42:56.905Z,1602002576.905 [MissionManager](INFO): DefineArg Science.EnabledWetLabsBB2FL = 1.000000 bool
2020-10-06T16:42:56.908Z,1602002576.908 [MissionManager](INFO): DefineArg Science.EnabledWetLabsSeaOWL_UV_A = 0.000000 bool
2020-10-06T16:42:56.914Z,1602002576.914 [MissionManager](INFO): DefineArg Science.EnabledWetLabsUBAT = 1.000000 bool
2020-10-06T16:42:56.921Z,1602002576.921 [MissionManager](INFO): DefineArg Science.LowPassWindowLength = 20.000000 count
2020-10-06T16:42:56.923Z,1602002576.923 [MissionManager](INFO): DefineArg Science.MedianFilterLen = 5.000000 count
2020-10-06T16:42:56.929Z,1602002576.929 [MissionManager](INFO): DefineArg Science.PeakChlShallowBound = nan m
2020-10-06T16:42:56.934Z,1602002576.934 [MissionManager](INFO): DefineArg Science.PeakChlDeepBound = nan m
2020-10-06T16:42:56.935Z,1602002576.935 [MissionManager](INFO): DefineArg Science.PeakShallowBound = nan m
2020-10-06T16:42:56.938Z,1602002576.938 [MissionManager](INFO): DefineArg Science.PeakDeepBound = nan m
2020-10-06T16:42:56.940Z,1602002576.940 [MissionManager](INFO): DefineOutput Science.PeakChl = 0.000000 ug/l
2020-10-06T16:42:56.946Z,1602002576.946 [MissionManager](INFO): DefineOutput Science.PeakChlDepth = 0.000000 m
2020-10-06T16:42:56.948Z,1602002576.948 [MissionManager](INFO): DefineOutput Science.PeakChlTemperature = 0.000000 degC
2020-10-06T16:42:56.954Z,1602002576.954 [MissionManager](INFO): DefineOutput Science.PeakChlLatitude = nan arcdeg
2020-10-06T16:42:56.961Z,1602002576.961 [MissionManager](INFO): DefineOutput Science.PeakChlLongitude = nan arcdeg
2020-10-06T16:42:56.963Z,1602002576.963 [MissionManager](INFO): DefineOutput Science.PeakNO3 = 0.000000 umol/l
2020-10-06T16:42:56.966Z,1602002576.966 [MissionManager](INFO): DefineOutput Science.PeakNO3Depth = 0.000000 m
2020-10-06T16:42:56.968Z,1602002576.968 [MissionManager](INFO): DefineOutput Science.PeakNO3Latitude = nan arcdeg
2020-10-06T16:42:56.978Z,1602002576.978 [MissionManager](INFO): DefineOutput Science.PeakNO3Longitude = nan arcdeg
2020-10-06T16:42:56.984Z,1602002576.984 [MissionManager](INFO): DefineOutput Science.PatchChl = 0.000000 m
2020-10-06T16:42:56.987Z,1602002576.987 [MissionManager](INFO): DefineOutput Science.PatchChlDepth = 0.000000 m
2020-10-06T16:42:56.993Z,1602002576.993 [MissionManager](INFO): DefineOutput Science.PatchChlLatitude = nan arcdeg
2020-10-06T16:42:56.995Z,1602002576.995 [MissionManager](INFO): DefineOutput Science.PatchChlLongitude = nan arcdeg
2020-10-06T16:42:57.001Z,1602002577.001 [MissionManager](INFO): DefineOutput Science.PatchChlDistance = nan m
2020-10-06T16:42:57.003Z,1602002577.003 [MissionManager](INFO): DefineOutput Science.PeakOil = 0.000000 kg/m3
2020-10-06T16:42:57.010Z,1602002577.010 [MissionManager](INFO): DefineOutput Science.PeakOilDepth = 0.000000 m
2020-10-06T16:42:57.012Z,1602002577.012 [MissionManager](INFO): DefineOutput Science.PeakOilLatitude = nan arcdeg
2020-10-06T16:42:57.018Z,1602002577.018 [MissionManager](INFO): DefineOutput Science.PeakOilLongitude = nan arcdeg
2020-10-06T16:42:57.024Z,1602002577.024 [MissionManager](INFO): DefineOutput Science.PeakFDOM = 0.000000 ppb
2020-10-06T16:42:57.041Z,1602002577.041 [MissionManager](INFO): DefineOutput Science.PeakFDOMDepth = 0.000000 m
2020-10-06T16:42:57.043Z,1602002577.043 [MissionManager](INFO): DefineOutput Science.PeakFDOMLatitude = nan arcdeg
2020-10-06T16:42:57.050Z,1602002577.050 [MissionManager](INFO): DefineOutput Science.PeakFDOMLongitude = nan arcdeg
2020-10-06T16:42:57.052Z,1602002577.052 [MissionManager](INFO): DefineOutput Science.PatchFDOMDistance = nan m
2020-10-06T16:42:57.095Z,1602002577.095 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-10-06T16:42:57.146Z,1602002577.146 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](DEBUG): Construct PeakDetectHorizontal.
2020-10-06T16:42:57.197Z,1602002577.197 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-10-06T16:42:57.221Z,1602002577.221 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-10-06T16:42:57.238Z,1602002577.238 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-10-06T16:42:57.301Z,1602002577.301 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<!-- ====================
     Generated by TethysL
     ==================== -->
<Aggregate xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
           xmlns="Tethys"
           xmlns:Units="Tethys/Units"
           xmlns:Science="Tethys/Science"
           xmlns:Universal="Tethys/Universal"
           xmlns:Trigger="Tethys/Trigger"
           xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                               Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                               Tethys/Science http://okeanids.mbari.org/tethys/Xml/Science.xsd
                               Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd
                               Tethys/Trigger http://okeanids.mbari.org/tethys/Xml/Trigger.xsd"
       Id="Science">

    <DefineArg Name="PeakDetectChlActive"><Description>
        Turns on peak detection of Cholorphyll.
    </Description><False/></DefineArg>

    <DefineArg Name="TimeWindowPeakReport"><Description>
        If greater than zero, report a peak every window. If NaN or zero, this
        variable is ignored.
    </Description><Units:minute/><Value>NaN</Value></DefineArg>

    <DefineArg Name="HighestChlPeakReportActive"><Description>
        Turns on reporting of the highest peak value on yo-yo profiles in a
        horizontal sliding window (of length numProfilesSlidingwindow)
    </Description><False/></DefineArg>

    <DefineArg Name="PatchTracking"><Description>
        If tracking a patch
    </Description><False/></DefineArg>

    <DefineArg Name="FilterWidthHorizontal"><Description>
        Width of boxcar filter applied to yoyo-wise chl peaks to pick out the
        highest peak.
    </Description><Units:count/><Value>3</Value></DefineArg>

    <DefineArg Name="NumProfilesSlidingwindow"><Description>
        Length of horizontal sliding window. The highest yoyo-wise chl peak
        (after low-pass filtering by a filter of length FilterWidthHorizontal)
        within this window.
    </Description><Units:count/><Value>100</Value></DefineArg>

    <DefineArg Name="OffPeakFractionHorizontal"><Description>
        When filtered horizontal value is this fraction of the peak, consider it
        outside the patch.
    </Description><Units:percent/><Value>80</Value></DefineArg>

    <DefineArg Name="PeakDetectNO3Active"><Description>
        Turns on peak detection of Nitrate (and turns on ISUS).
    </Description><False/></DefineArg>

    <DefineArg Name="PeakDetectOilActive"><Description>
        Turns on peak detection of Dissolved Oil.
    </Description><False/></DefineArg>

    <DefineArg Name="PeakDetectFDOMActive"><Description>
        Turns on peak detection of concentration_of_chromophoric_dissolved_organic_matter_in_sea_water from FDOM sensor.
    </Description><False/></DefineArg>
    
    <DefineArg Name="UpwardDerivativeOfTemperatureActive"><Description>
        Turns on seawater temperature derivative.
    </Description><False/></DefineArg>

    <DefineArg Name="EnabledAanderaaO2"><Description>
        Automatically set to True if the Aanderaa O2 sensor is installed. Set to
        false to disable reading Aandera O2.
    </Description><Science:Aanderaa_O2.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledNeilBrown"><Description>
        Automatically set to true if the Neil Brown CTD is enabled. Set to false
        to disable reading from the Neil Brown.
    </Description><Science:CTD_NeilBrown.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledSeabird"><Description>
        Automatically set to true if the CTD is enabled. Set to false to disable
        reading from the CTD.
    </Description><Science:CTD_Seabird.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsBB2FL"><Description>
        Automatically set to true if the the WetLabs BB2FL is enabled. Set to
        false to disable the WetLabs BB2FL.
    </Description><Science:WetLabsBB2FL.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsSeaOWL_UV_A"><Description>
        Automatically set to true if the the WetLabs SeaOWL UV-A is enabled. Set
        to false to disable the WetLabs SeaOWL UV-A.
    </Description><Science:WetLabsSeaOWL_UV_A.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsUBAT"><Description>
        Automatically set to true if the the WetLabs UBAT is enabled. Set
        to false to disable the WetLabs UBAT.
    </Description><Science:WetLabsUBAT.loadAtStartup/></DefineArg>

    <DefineArg Name="LowPassWindowLength"><Description>
        Low-pass window length (based on depth sensor sampling interval 0.4
        second) for low-pass filtering.
    </Description><Units:count/><Value>20</Value></DefineArg>

    <DefineArg Name="MedianFilterLen"><Description>
        Median filter length (only for chlorophyll fluorescence which tends to have spikes)
    </Description><Units:count/><Value>5</Value></DefineArg>

    <DefineArg Name="PeakChlShallowBound"><Description>
        Shallow depth bound for detecting chl peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineArg Name="PeakChlDeepBound"><Description>
        Deep depth bound for detecting chl peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineArg Name="PeakShallowBound"><Description>
        Shallow depth bound for detecting any peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineArg Name="PeakDeepBound"><Description>
        Deep depth bound for detecting any peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineOutput Name="PeakChl"><Units:microgram_per_liter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlTemperature"><Units:celsius/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakChlLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakNO3"><Units:micromole_per_liter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Depth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Latitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Longitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChl"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PatchChlDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PatchChlLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChlLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChlDistance"><Units:meter/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakOil"><Units:kilogram_per_cubic_meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakOilDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakOilLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakOilLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakFDOM"><Units:part_per_billion/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>
    
    <DefineOutput Name="PatchFDOMDistance"><Units:meter/><Value>NaN</Value></DefineOutput>    
    
    <Parallel/>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledAanderaaO2"/>
        </While>
        <Universal:mass_concentration_of_oxygen_in_sea_water/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledNeilBrown"/>
            <Or><Arg Name="EnabledSeabird"/></Or>
        </While>
        <Universal:sea_water_temperature/>
        <Universal:sea_water_salinity/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledSeabird"/>
        </While>
        <Science:CTD_Seabird.sea_water_temperature/>
        <Science:CTD_Seabird.sea_water_salinity/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledNeilBrown"/>
            <Or><Arg Name="EnabledSeabird"/></Or>
            <And><Arg Name="UpwardDerivativeOfTemperatureActive"/></And>
        </While>
        <Universal:upward_derivative_of_sea_water_temperature/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsBB2FL"/>
            <Or><Arg Name="PeakDetectChlActive"/></Or>
        </While>
        <Universal:mass_concentration_of_chlorophyll_in_sea_water/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsUBAT"/>
        </While>
        <Science:WetLabsUBAT.biolum_potential/>
    </ReadData>

    <ReadData Id="Read_Oil" Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsSeaOWL_UV_A"/>
            <Or><Arg Name="PeakDetectOilActive"/></Or>
        </While>
        <Universal:mass_concentration_of_chlorophyll_in_sea_water/>
    </ReadData>

    <Aggregate Id="OceanCurrent">
        <Estimation:CurrentEstimator>
            <Parallel/>
        </Estimation:CurrentEstimator>	
    </Aggregate>    	

    <Aggregate Id="PeakDetectChl">

        <While>
            <Arg Name="PeakDetectChlActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mass_concentration_of_chlorophyll_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.medianFilterLength/><Arg Name="MedianFilterLen"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakChlShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakChlDeepBound"/></Setting>
            <OutputArg Name="PeakChl"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakChlDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakChlTemperature"><Trigger:PeakDetectVsDepth.peakTemperature/></OutputArg>
            <OutputArg Name="PeakChlLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakChlLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

<!--debug
        <Syslog Severity="Important">PeakChl, PeakChlLatitude, PeakChlLongitude = <Arg Name="PeakChl"/><Units:microgram_per_liter/>, <Arg Name="PeakChlLatitude"/><Units:degree/>, <Arg Name="PeakChlLongitude"/><Units:degree/></Syslog>
-->

        <SendData Service="Express"><Arg Name="PeakChl"/><Arg Name="PeakChlDepth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="HighestChlPeakReport">

        <While>
            <Arg Name="HighestChlPeakReportActive"/>
        </While>

        <Trigger:PeakDetectHorizontal>
            <Sequence/>
            <Setting><Trigger:PeakDetectHorizontal.detectFrom/><Arg Name="PeakChl"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.depthFrom/><Arg Name="PeakChlDepth"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.latitudeFrom/><Arg Name="PeakChlLatitude"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.longitudeFrom/><Arg Name="PeakChlLongitude"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.patchTracking/><Arg Name="PatchTracking"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.filterWidth/><Arg Name="FilterWidthHorizontal"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.numProfilesSlidingwindow/><Arg Name="NumProfilesSlidingwindow"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.offPeakFraction/><Arg Name="OffPeakFractionHorizontal"/></Setting>
            <OutputArg Name="PatchChl"><Trigger:PeakDetectHorizontal.peakDetect/></OutputArg>
            <OutputArg Name="PatchChlDepth"><Trigger:PeakDetectHorizontal.peakDepth/></OutputArg>
            <OutputArg Name="PatchChlLatitude"><Trigger:PeakDetectHorizontal.peakLatitude/></OutputArg>
            <OutputArg Name="PatchChlLongitude"><Trigger:PeakDetectHorizontal.peakLongitude/></OutputArg>
            <OutputArg Name="PatchChlDistance"><Trigger:PeakDetectHorizontal.peakDistance/></OutputArg>
        </Trigger:PeakDetectHorizontal>

    </Aggregate>

    <Aggregate Id="PeakDetectNO3">

        <While>
            <Arg Name="PeakDetectNO3Active"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mole_concentration_of_nitrate_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakNO3"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakNO3Depth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakNO3Latitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakNO3Longitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakNO3"/><Arg Name="PeakNO3Depth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="PeakDetectOil">

        <While>
            <Arg Name="PeakDetectOilActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mass_concentration_of_petroleum_hydrocarbons_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakOil"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakOilDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakOilLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakOilLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakOil"/><Arg Name="PeakOilDepth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="PeakDetectFDOM">

        <While>
            <Arg Name="PeakDetectFDOMActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:concentration_of_chromophoric_dissolved_organic_matter_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakFDOM"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakFDOMDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakFDOMTemperature"><Trigger:PeakDetectVsDepth.peakTemperature/></OutputArg>
            <OutputArg Name="PeakFDOMLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakFDOMLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakFDOM"/><Arg Name="PeakFDOMDepth"/>
        </SendData>

    </Aggregate>

</Aggregate>


2020-10-06T16:42:57.303Z,1602002577.303 [CommandLine](IMPORTANT): Running ./Missions/Insert/Science.xml
2020-10-06T16:42:57.584Z,1602002577.584 [Default] Stopped
2020-10-06T16:42:57.585Z,1602002577.585 [Default](DEBUG): Aggregate::uninitialize Default
2020-10-06T16:42:57.585Z,1602002577.585 [Default:B.GoToSurface] Stopped
2020-10-06T16:42:57.585Z,1602002577.585 [Default:B.GoToSurface](DEBUG): Uninitialize GoToSurfaceComponent.
2020-10-06T16:42:57.585Z,1602002577.585 [Default:CheckIn] Stopped
2020-10-06T16:42:57.585Z,1602002577.585 [Default:CheckIn](DEBUG): Aggregate::uninitialize Default:CheckIn
2020-10-06T16:42:57.585Z,1602002577.585 [Default:CheckIn:Read_GPS] Stopped
2020-10-06T16:42:57.585Z,1602002577.585 [MissionManager](IMPORTANT): Started mission Science
2020-10-06T16:42:57.585Z,1602002577.585 [Science] Running Loop=1
2020-10-06T16:42:57.585Z,1602002577.585 [Science](DEBUG): Aggregate::initialize Science
2020-10-06T16:42:57.585Z,1602002577.585 [Science:A] Running Loop=1
2020-10-06T16:42:57.585Z,1602002577.585 [Science:B] Running Loop=1
2020-10-06T16:42:57.586Z,1602002577.586 [Science:C] Running Loop=1
2020-10-06T16:42:57.586Z,1602002577.586 [Science:D] Running Loop=1
2020-10-06T16:42:57.586Z,1602002577.586 [Science:E] Running Loop=1
2020-10-06T16:42:57.586Z,1602002577.586 [Science:F] Running Loop=1
2020-10-06T16:42:57.586Z,1602002577.586 [Science:Read_Oil] Running Loop=1
2020-10-06T16:42:57.586Z,1602002577.586 [Science:PeakDetectChl] Running Loop=1
2020-10-06T16:42:57.586Z,1602002577.586 [Science:PeakDetectChl](DEBUG): Aggregate::initialize Science:PeakDetectChl
2020-10-06T16:42:57.586Z,1602002577.586 [Science:PeakDetectChl:A.PeakDetectVsDepth] Running Loop=1
2020-10-06T16:42:57.586Z,1602002577.586 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-10-06T16:42:57.587Z,1602002577.587 [Science:HighestChlPeakReport] Running Loop=1
2020-10-06T16:42:57.588Z,1602002577.588 [Science:HighestChlPeakReport](DEBUG): Aggregate::initialize Science:HighestChlPeakReport
2020-10-06T16:42:57.588Z,1602002577.588 [Science:HighestChlPeakReport:A.PeakDetectHorizontal] Running Loop=1
2020-10-06T16:42:57.588Z,1602002577.588 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](INFO): Initialize.
2020-10-06T16:42:57.597Z,1602002577.597 [Science:PeakDetectNO3] Running Loop=1
2020-10-06T16:42:57.597Z,1602002577.597 [Science:PeakDetectNO3](DEBUG): Aggregate::initialize Science:PeakDetectNO3
2020-10-06T16:42:57.597Z,1602002577.597 [Science:PeakDetectNO3:A.PeakDetectVsDepth] Running Loop=1
2020-10-06T16:42:57.597Z,1602002577.597 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-10-06T16:42:57.598Z,1602002577.598 [Science:PeakDetectOil] Running Loop=1
2020-10-06T16:42:57.598Z,1602002577.598 [Science:PeakDetectOil](DEBUG): Aggregate::initialize Science:PeakDetectOil
2020-10-06T16:42:57.598Z,1602002577.598 [Science:PeakDetectOil:A.PeakDetectVsDepth] Running Loop=1
2020-10-06T16:42:57.598Z,1602002577.598 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-10-06T16:42:57.599Z,1602002577.599 [Science:PeakDetectFDOM] Running Loop=1
2020-10-06T16:42:57.599Z,1602002577.599 [Science:PeakDetectFDOM](DEBUG): Aggregate::initialize Science:PeakDetectFDOM
2020-10-06T16:42:57.600Z,1602002577.600 [Science:PeakDetectFDOM:A.PeakDetectVsDepth] Running Loop=1
2020-10-06T16:42:57.600Z,1602002577.600 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-10-06T16:42:57.609Z,1602002577.609 [Science:OceanCurrent] Running Loop=1
2020-10-06T16:42:57.609Z,1602002577.609 [Science:OceanCurrent](DEBUG): Aggregate::initialize Science:OceanCurrent
2020-10-06T16:42:57.609Z,1602002577.609 [Science:OceanCurrent:A.] Running Loop=1
2020-10-06T16:42:57.609Z,1602002577.609 [Science:OceanCurrent:A.](INFO): Initializing CurrentEstimator.
2020-10-06T16:42:57.610Z,1602002577.610 [Science:PeakDetectFDOM] Stopped
2020-10-06T16:42:57.610Z,1602002577.610 [Science:PeakDetectFDOM](DEBUG): Aggregate::uninitialize Science:PeakDetectFDOM
2020-10-06T16:42:57.610Z,1602002577.610 [Science:PeakDetectFDOM:A.PeakDetectVsDepth] Stopped
2020-10-06T16:42:57.611Z,1602002577.611 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-10-06T16:42:57.611Z,1602002577.611 [Science:PeakDetectOil] Stopped
2020-10-06T16:42:57.611Z,1602002577.611 [Science:PeakDetectOil](DEBUG): Aggregate::uninitialize Science:PeakDetectOil
2020-10-06T16:42:57.611Z,1602002577.611 [Science:PeakDetectOil:A.PeakDetectVsDepth] Stopped
2020-10-06T16:42:57.611Z,1602002577.611 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-10-06T16:42:57.611Z,1602002577.611 [Science:PeakDetectNO3] Stopped
2020-10-06T16:42:57.611Z,1602002577.611 [Science:PeakDetectNO3](DEBUG): Aggregate::uninitialize Science:PeakDetectNO3
2020-10-06T16:42:57.611Z,1602002577.611 [Science:PeakDetectNO3:A.PeakDetectVsDepth] Stopped
2020-10-06T16:42:57.611Z,1602002577.611 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-10-06T16:42:57.611Z,1602002577.611 [Science:HighestChlPeakReport] Stopped
2020-10-06T16:42:57.611Z,1602002577.611 [Science:HighestChlPeakReport](DEBUG): Aggregate::uninitialize Science:HighestChlPeakReport
2020-10-06T16:42:57.611Z,1602002577.611 [Science:HighestChlPeakReport:A.PeakDetectHorizontal] Stopped
2020-10-06T16:42:57.611Z,1602002577.611 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](DEBUG): Uninitialize.
2020-10-06T16:42:57.612Z,1602002577.612 [Science:PeakDetectChl] Stopped
2020-10-06T16:42:57.612Z,1602002577.612 [Science:PeakDetectChl](DEBUG): Aggregate::uninitialize Science:PeakDetectChl
2020-10-06T16:42:57.612Z,1602002577.612 [Science:PeakDetectChl:A.PeakDetectVsDepth] Stopped
2020-10-06T16:42:57.612Z,1602002577.612 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-10-06T16:42:57.612Z,1602002577.612 [Science:OceanCurrent:A.] Running Loop=1
2020-10-06T16:42:57.620Z,1602002577.620 [Science:Read_Oil] Stopped
2020-10-06T16:42:57.620Z,1602002577.620 [Science:F] Running Loop=1
2020-10-06T16:42:57.621Z,1602002577.621 [Science:F](CRITICAL): Unable to read non-existent URI:WetLabsUBAT.biolum_potential
2020-10-06T16:42:57.621Z,1602002577.621 [Science:F](CRITICAL): Unable to read non-existent data element: WetLabsUBAT.biolum_potential
2020-10-06T16:42:57.621Z,1602002577.621 [Science:E] Running Loop=1
2020-10-06T16:42:57.621Z,1602002577.621 [Science:E](DEBUG): Initialize ReadDataComponent to sense mass_concentration_of_chlorophyll_in_sea_water
2020-10-06T16:42:57.622Z,1602002577.622 [Science:D] Stopped
2020-10-06T16:42:57.622Z,1602002577.622 [Science:C] Running Loop=1
2020-10-06T16:42:57.622Z,1602002577.622 [Science:C](DEBUG): Initialize ReadDataComponent to sense CTD_Seabird.sea_water_temperature
2020-10-06T16:42:57.622Z,1602002577.622 [Science:C](DEBUG): Initialize ReadDataComponent to sense CTD_Seabird.sea_water_salinity
2020-10-06T16:42:57.622Z,1602002577.622 [Science:B] Running Loop=1
2020-10-06T16:42:57.623Z,1602002577.623 [Science:B](DEBUG): Initialize ReadDataComponent to sense sea_water_temperature
2020-10-06T16:42:57.623Z,1602002577.623 [Science:B](DEBUG): Initialize ReadDataComponent to sense sea_water_salinity
2020-10-06T16:42:57.623Z,1602002577.623 [Science:A] Stopped
2020-10-06T16:42:57.638Z,1602002577.638 [CBIT](INFO): Critical error at 20201006T164257
2020-10-06T16:42:57.638Z,1602002577.638 [Supervisor](INFO): Stop Mission called by CBIT::checkCriticals
2020-10-06T16:42:57.653Z,1602002577.653 [WetLabsBB2FL](INFO): Powering up
2020-10-06T16:42:57.972Z,1602002577.972 [Science:F](CRITICAL): Unable to read non-existent URI:WetLabsUBAT.biolum_potential
2020-10-06T16:42:57.972Z,1602002577.972 [Science:F](CRITICAL): Unable to read non-existent data element: WetLabsUBAT.biolum_potential
2020-10-06T16:42:57.973Z,1602002577.973 [MissionManager](INFO): MissionManager is completed.
2020-10-06T16:42:57.973Z,1602002577.973 [MissionManager](INFO): Uninitializing Mission Science
2020-10-06T16:42:57.973Z,1602002577.973 [Science] Stopped
2020-10-06T16:42:57.973Z,1602002577.973 [Science](DEBUG): Aggregate::uninitialize Science
2020-10-06T16:42:57.973Z,1602002577.973 [Science:B] Stopped
2020-10-06T16:42:57.973Z,1602002577.973 [Science:C] Stopped
2020-10-06T16:42:57.973Z,1602002577.973 [Science:E] Stopped
2020-10-06T16:42:57.973Z,1602002577.973 [Science:F] Stopped
2020-10-06T16:42:57.973Z,1602002577.973 [Science:OceanCurrent] Stopped
2020-10-06T16:42:57.973Z,1602002577.973 [Science:OceanCurrent](DEBUG): Aggregate::uninitialize Science:OceanCurrent
2020-10-06T16:42:57.973Z,1602002577.973 [Science:OceanCurrent:A.] Stopped
2020-10-06T16:42:58.027Z,1602002578.027 [CBIT](INFO): Critical error at 20201006T164257
2020-10-06T16:42:58.380Z,1602002578.380 [MissionManager](IMPORTANT): Started mission Default
2020-10-06T16:42:58.380Z,1602002578.380 [Default] Running Loop=1
2020-10-06T16:42:58.380Z,1602002578.380 [Default](DEBUG): Aggregate::initialize Default
2020-10-06T16:42:58.381Z,1602002578.381 [Default:B.GoToSurface] Running Loop=1
2020-10-06T16:42:58.381Z,1602002578.381 [Default:B.GoToSurface](DEBUG): Initialize GoToSurfaceComponent.
2020-10-06T16:42:58.381Z,1602002578.381 [Default:B.GoToSurface](DEBUG): No depth rate setting specified. Using default value of nan m/s.
2020-10-06T16:42:58.381Z,1602002578.381 [Default:B.GoToSurface](DEBUG): No pitch setting specified. Using default value of nan degrees.
2020-10-06T16:42:58.381Z,1602002578.381 [Default:B.GoToSurface](DEBUG): No speed setting specified. Using default value of 1.000000 m/s.
2020-10-06T16:42:58.382Z,1602002578.382 [Default:B.GoToSurface](DEBUG): No surface timeout specified. Using default value of 1000.000000 seconds.
2020-10-06T16:42:58.382Z,1602002578.382 [Default:B.GoToSurface](INFO): Received pitch timeout configuration 60.000000 seconds.
2020-10-06T16:42:58.382Z,1602002578.382 [Default:A.Wait] Running Loop=1
2020-10-06T16:42:58.382Z,1602002578.382 [Default:A.Wait](DEBUG): Initialize Wait Component.
2020-10-06T16:43:00.260Z,1602002580.260 [WetLabsBB2FL](INFO): Powering down
2020-10-06T16:43:11.390Z,1602002591.390 [CommandLine](IMPORTANT): got command show stack
2020-10-06T16:43:11.390Z,1602002591.390 [CommandLine](IMPORTANT): Behavior Stack:

2020-10-06T16:43:11.390Z,1602002591.390 [Default](IMPORTANT): Priority 0: Default:A.Wait
2020-10-06T16:43:11.391Z,1602002591.391 [Default](IMPORTANT): Priority 1: Default:B.GoToSurface
2020-10-06T16:43:11.702Z,1602002591.702 [Default:A.Wait](INFO): Done Waiting.
2020-10-06T16:43:11.703Z,1602002591.703 [Default:A.Wait] Stopped
2020-10-06T16:43:11.703Z,1602002591.703 [Default:A.Wait](DEBUG): Uninitialize Wait Component.
2020-10-06T16:43:12.102Z,1602002592.102 [Default:CheckIn] Running Loop=1
2020-10-06T16:43:12.103Z,1602002592.103 [Default:CheckIn](DEBUG): Aggregate::initialize Default:CheckIn
2020-10-06T16:43:12.103Z,1602002592.103 [Default:CheckIn:Read_GPS] Running Loop=1
2020-10-06T16:43:12.915Z,1602002592.915 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:43:14.957Z,1602002594.957 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:43:30.258Z,1602002610.258 [NAL9602](FAULT): MT Queue status failed to be acquired within timeout. Will not retry this session.
2020-10-06T16:43:40.229Z,1602002620.229 [CommandLine](IMPORTANT): got command run ./Missions/Insert/Science.xml
2020-10-06T16:43:40.229Z,1602002620.229 [MissionManager](INFO): Loading Mission: ./Missions/Insert/Science.xml
2020-10-06T16:43:40.604Z,1602002620.604 [MissionManager](INFO): DefineArg Science.PeakDetectChlActive = 0 bool
2020-10-06T16:43:40.625Z,1602002620.625 [MissionManager](INFO): DefineArg Science.TimeWindowPeakReport = nan min
2020-10-06T16:43:40.627Z,1602002620.627 [MissionManager](INFO): DefineArg Science.HighestChlPeakReportActive = 0 bool
2020-10-06T16:43:40.633Z,1602002620.633 [MissionManager](INFO): DefineArg Science.PatchTracking = 0 bool
2020-10-06T16:43:40.635Z,1602002620.635 [MissionManager](INFO): DefineArg Science.FilterWidthHorizontal = 3.000000 count
2020-10-06T16:43:40.641Z,1602002620.641 [MissionManager](INFO): DefineArg Science.NumProfilesSlidingwindow = 100.000000 count
2020-10-06T16:43:40.643Z,1602002620.643 [MissionManager](INFO): DefineArg Science.OffPeakFractionHorizontal = 80.000000 %
2020-10-06T16:43:40.649Z,1602002620.649 [MissionManager](INFO): DefineArg Science.PeakDetectNO3Active = 0 bool
2020-10-06T16:43:40.651Z,1602002620.651 [MissionManager](INFO): DefineArg Science.PeakDetectOilActive = 0 bool
2020-10-06T16:43:40.657Z,1602002620.657 [MissionManager](INFO): DefineArg Science.PeakDetectFDOMActive = 0 bool
2020-10-06T16:43:40.659Z,1602002620.659 [MissionManager](INFO): DefineArg Science.UpwardDerivativeOfTemperatureActive = 0 bool
2020-10-06T16:43:40.701Z,1602002620.701 [MissionManager](INFO): DefineArg Science.EnabledAanderaaO2 = 0.000000 bool
2020-10-06T16:43:40.703Z,1602002620.703 [MissionManager](INFO): DefineArg Science.EnabledNeilBrown = 0.000000 bool
2020-10-06T16:43:40.717Z,1602002620.717 [MissionManager](INFO): DefineArg Science.EnabledSeabird = 1.000000 bool
2020-10-06T16:43:40.719Z,1602002620.719 [MissionManager](INFO): DefineArg Science.EnabledWetLabsBB2FL = 1.000000 bool
2020-10-06T16:43:40.734Z,1602002620.734 [MissionManager](INFO): DefineArg Science.EnabledWetLabsSeaOWL_UV_A = 0.000000 bool
2020-10-06T16:43:40.745Z,1602002620.745 [MissionManager](INFO): DefineArg Science.EnabledWetLabsUBAT = 1.000000 bool
2020-10-06T16:43:40.747Z,1602002620.747 [MissionManager](INFO): DefineArg Science.LowPassWindowLength = 20.000000 count
2020-10-06T16:43:40.794Z,1602002620.794 [MissionManager](INFO): DefineArg Science.MedianFilterLen = 5.000000 count
2020-10-06T16:43:40.796Z,1602002620.796 [MissionManager](INFO): DefineArg Science.PeakChlShallowBound = nan m
2020-10-06T16:43:40.814Z,1602002620.814 [MissionManager](INFO): DefineArg Science.PeakChlDeepBound = nan m
2020-10-06T16:43:40.828Z,1602002620.828 [MissionManager](INFO): DefineArg Science.PeakShallowBound = nan m
2020-10-06T16:43:40.830Z,1602002620.830 [MissionManager](INFO): DefineArg Science.PeakDeepBound = nan m
2020-10-06T16:43:40.841Z,1602002620.841 [MissionManager](INFO): DefineOutput Science.PeakChl = 0.000000 ug/l
2020-10-06T16:43:40.843Z,1602002620.843 [MissionManager](INFO): DefineOutput Science.PeakChlDepth = 0.000000 m
2020-10-06T16:43:40.851Z,1602002620.851 [MissionManager](INFO): DefineOutput Science.PeakChlTemperature = 0.000000 degC
2020-10-06T16:43:40.865Z,1602002620.865 [MissionManager](INFO): DefineOutput Science.PeakChlLatitude = nan arcdeg
2020-10-06T16:43:40.867Z,1602002620.867 [MissionManager](INFO): DefineOutput Science.PeakChlLongitude = nan arcdeg
2020-10-06T16:43:40.878Z,1602002620.878 [MissionManager](INFO): DefineOutput Science.PeakNO3 = 0.000000 umol/l
2020-10-06T16:43:40.880Z,1602002620.880 [MissionManager](INFO): DefineOutput Science.PeakNO3Depth = 0.000000 m
2020-10-06T16:43:40.914Z,1602002620.914 [MissionManager](INFO): DefineOutput Science.PeakNO3Latitude = nan arcdeg
2020-10-06T16:43:40.916Z,1602002620.916 [MissionManager](INFO): DefineOutput Science.PeakNO3Longitude = nan arcdeg
2020-10-06T16:43:40.918Z,1602002620.918 [MissionManager](INFO): DefineOutput Science.PatchChl = 0.000000 m
2020-10-06T16:43:40.920Z,1602002620.920 [MissionManager](INFO): DefineOutput Science.PatchChlDepth = 0.000000 m
2020-10-06T16:43:40.938Z,1602002620.938 [MissionManager](INFO): DefineOutput Science.PatchChlLatitude = nan arcdeg
2020-10-06T16:43:40.945Z,1602002620.945 [MissionManager](INFO): DefineOutput Science.PatchChlLongitude = nan arcdeg
2020-10-06T16:43:40.947Z,1602002620.947 [MissionManager](INFO): DefineOutput Science.PatchChlDistance = nan m
2020-10-06T16:43:40.958Z,1602002620.958 [MissionManager](INFO): DefineOutput Science.PeakOil = 0.000000 kg/m3
2020-10-06T16:43:40.960Z,1602002620.960 [MissionManager](INFO): DefineOutput Science.PeakOilDepth = 0.000000 m
2020-10-06T16:43:40.984Z,1602002620.984 [MissionManager](INFO): DefineOutput Science.PeakOilLatitude = nan arcdeg
2020-10-06T16:43:40.987Z,1602002620.987 [MissionManager](INFO): DefineOutput Science.PeakOilLongitude = nan arcdeg
2020-10-06T16:43:40.997Z,1602002620.997 [MissionManager](INFO): DefineOutput Science.PeakFDOM = 0.000000 ppb
2020-10-06T16:43:41.005Z,1602002621.005 [MissionManager](INFO): DefineOutput Science.PeakFDOMDepth = 0.000000 m
2020-10-06T16:43:41.007Z,1602002621.007 [MissionManager](INFO): DefineOutput Science.PeakFDOMLatitude = nan arcdeg
2020-10-06T16:43:41.014Z,1602002621.014 [MissionManager](INFO): DefineOutput Science.PeakFDOMLongitude = nan arcdeg
2020-10-06T16:43:41.024Z,1602002621.024 [MissionManager](INFO): DefineOutput Science.PatchFDOMDistance = nan m
2020-10-06T16:43:41.063Z,1602002621.063 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-10-06T16:43:41.105Z,1602002621.105 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](DEBUG): Construct PeakDetectHorizontal.
2020-10-06T16:43:41.147Z,1602002621.147 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-10-06T16:43:41.221Z,1602002621.221 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-10-06T16:43:41.250Z,1602002621.250 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-10-06T16:43:41.360Z,1602002621.360 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<!-- ====================
     Generated by TethysL
     ==================== -->
<Aggregate xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
           xmlns="Tethys"
           xmlns:Units="Tethys/Units"
           xmlns:Science="Tethys/Science"
           xmlns:Universal="Tethys/Universal"
           xmlns:Trigger="Tethys/Trigger"
           xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                               Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                               Tethys/Science http://okeanids.mbari.org/tethys/Xml/Science.xsd
                               Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd
                               Tethys/Trigger http://okeanids.mbari.org/tethys/Xml/Trigger.xsd"
       Id="Science">

    <DefineArg Name="PeakDetectChlActive"><Description>
        Turns on peak detection of Cholorphyll.
    </Description><False/></DefineArg>

    <DefineArg Name="TimeWindowPeakReport"><Description>
        If greater than zero, report a peak every window. If NaN or zero, this
        variable is ignored.
    </Description><Units:minute/><Value>NaN</Value></DefineArg>

    <DefineArg Name="HighestChlPeakReportActive"><Description>
        Turns on reporting of the highest peak value on yo-yo profiles in a
        horizontal sliding window (of length numProfilesSlidingwindow)
    </Description><False/></DefineArg>

    <DefineArg Name="PatchTracking"><Description>
        If tracking a patch
    </Description><False/></DefineArg>

    <DefineArg Name="FilterWidthHorizontal"><Description>
        Width of boxcar filter applied to yoyo-wise chl peaks to pick out the
        highest peak.
    </Description><Units:count/><Value>3</Value></DefineArg>

    <DefineArg Name="NumProfilesSlidingwindow"><Description>
        Length of horizontal sliding window. The highest yoyo-wise chl peak
        (after low-pass filtering by a filter of length FilterWidthHorizontal)
        within this window.
    </Description><Units:count/><Value>100</Value></DefineArg>

    <DefineArg Name="OffPeakFractionHorizontal"><Description>
        When filtered horizontal value is this fraction of the peak, consider it
        outside the patch.
    </Description><Units:percent/><Value>80</Value></DefineArg>

    <DefineArg Name="PeakDetectNO3Active"><Description>
        Turns on peak detection of Nitrate (and turns on ISUS).
    </Description><False/></DefineArg>

    <DefineArg Name="PeakDetectOilActive"><Description>
        Turns on peak detection of Dissolved Oil.
    </Description><False/></DefineArg>

    <DefineArg Name="PeakDetectFDOMActive"><Description>
        Turns on peak detection of concentration_of_chromophoric_dissolved_organic_matter_in_sea_water from FDOM sensor.
    </Description><False/></DefineArg>
    
    <DefineArg Name="UpwardDerivativeOfTemperatureActive"><Description>
        Turns on seawater temperature derivative.
    </Description><False/></DefineArg>

    <DefineArg Name="EnabledAanderaaO2"><Description>
        Automatically set to True if the Aanderaa O2 sensor is installed. Set to
        false to disable reading Aandera O2.
    </Description><Science:Aanderaa_O2.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledNeilBrown"><Description>
        Automatically set to true if the Neil Brown CTD is enabled. Set to false
        to disable reading from the Neil Brown.
    </Description><Science:CTD_NeilBrown.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledSeabird"><Description>
        Automatically set to true if the CTD is enabled. Set to false to disable
        reading from the CTD.
    </Description><Science:CTD_Seabird.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsBB2FL"><Description>
        Automatically set to true if the the WetLabs BB2FL is enabled. Set to
        false to disable the WetLabs BB2FL.
    </Description><Science:WetLabsBB2FL.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsSeaOWL_UV_A"><Description>
        Automatically set to true if the the WetLabs SeaOWL UV-A is enabled. Set
        to false to disable the WetLabs SeaOWL UV-A.
    </Description><Science:WetLabsSeaOWL_UV_A.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsUBAT"><Description>
        Automatically set to true if the the WetLabs UBAT is enabled. Set
        to false to disable the WetLabs UBAT.
    </Description><Science:WetLabsUBAT.loadAtStartup/></DefineArg>

    <DefineArg Name="LowPassWindowLength"><Description>
        Low-pass window length (based on depth sensor sampling interval 0.4
        second) for low-pass filtering.
    </Description><Units:count/><Value>20</Value></DefineArg>

    <DefineArg Name="MedianFilterLen"><Description>
        Median filter length (only for chlorophyll fluorescence which tends to have spikes)
    </Description><Units:count/><Value>5</Value></DefineArg>

    <DefineArg Name="PeakChlShallowBound"><Description>
        Shallow depth bound for detecting chl peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineArg Name="PeakChlDeepBound"><Description>
        Deep depth bound for detecting chl peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineArg Name="PeakShallowBound"><Description>
        Shallow depth bound for detecting any peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineArg Name="PeakDeepBound"><Description>
        Deep depth bound for detecting any peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineOutput Name="PeakChl"><Units:microgram_per_liter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlTemperature"><Units:celsius/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakChlLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakNO3"><Units:micromole_per_liter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Depth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Latitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Longitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChl"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PatchChlDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PatchChlLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChlLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChlDistance"><Units:meter/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakOil"><Units:kilogram_per_cubic_meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakOilDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakOilLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakOilLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakFDOM"><Units:part_per_billion/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>
    
    <DefineOutput Name="PatchFDOMDistance"><Units:meter/><Value>NaN</Value></DefineOutput>    
    
    <Parallel/>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledAanderaaO2"/>
        </While>
        <Universal:mass_concentration_of_oxygen_in_sea_water/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledNeilBrown"/>
            <Or><Arg Name="EnabledSeabird"/></Or>
        </While>
        <Universal:sea_water_temperature/>
        <Universal:sea_water_salinity/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledSeabird"/>
        </While>
        <Science:CTD_Seabird.sea_water_temperature/>
        <Science:CTD_Seabird.sea_water_salinity/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledNeilBrown"/>
            <Or><Arg Name="EnabledSeabird"/></Or>
            <And><Arg Name="UpwardDerivativeOfTemperatureActive"/></And>
        </While>
        <Universal:upward_derivative_of_sea_water_temperature/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsBB2FL"/>
            <Or><Arg Name="PeakDetectChlActive"/></Or>
        </While>
        <Universal:mass_concentration_of_chlorophyll_in_sea_water/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsUBAT"/>
        </While>
        <Science:WetLabsUBAT.biolum_potential/>
    </ReadData>

    <ReadData Id="Read_Oil" Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsSeaOWL_UV_A"/>
            <Or><Arg Name="PeakDetectOilActive"/></Or>
        </While>
        <Universal:mass_concentration_of_chlorophyll_in_sea_water/>
    </ReadData>

    <Aggregate Id="OceanCurrent">
        <Estimation:CurrentEstimator>
            <Parallel/>
        </Estimation:CurrentEstimator>	
    </Aggregate>    	

    <Aggregate Id="PeakDetectChl">

        <While>
            <Arg Name="PeakDetectChlActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mass_concentration_of_chlorophyll_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.medianFilterLength/><Arg Name="MedianFilterLen"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakChlShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakChlDeepBound"/></Setting>
            <OutputArg Name="PeakChl"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakChlDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakChlTemperature"><Trigger:PeakDetectVsDepth.peakTemperature/></OutputArg>
            <OutputArg Name="PeakChlLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakChlLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

<!--debug
        <Syslog Severity="Important">PeakChl, PeakChlLatitude, PeakChlLongitude = <Arg Name="PeakChl"/><Units:microgram_per_liter/>, <Arg Name="PeakChlLatitude"/><Units:degree/>, <Arg Name="PeakChlLongitude"/><Units:degree/></Syslog>
-->

        <SendData Service="Express"><Arg Name="PeakChl"/><Arg Name="PeakChlDepth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="HighestChlPeakReport">

        <While>
            <Arg Name="HighestChlPeakReportActive"/>
        </While>

        <Trigger:PeakDetectHorizontal>
            <Sequence/>
            <Setting><Trigger:PeakDetectHorizontal.detectFrom/><Arg Name="PeakChl"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.depthFrom/><Arg Name="PeakChlDepth"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.latitudeFrom/><Arg Name="PeakChlLatitude"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.longitudeFrom/><Arg Name="PeakChlLongitude"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.patchTracking/><Arg Name="PatchTracking"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.filterWidth/><Arg Name="FilterWidthHorizontal"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.numProfilesSlidingwindow/><Arg Name="NumProfilesSlidingwindow"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.offPeakFraction/><Arg Name="OffPeakFractionHorizontal"/></Setting>
            <OutputArg Name="PatchChl"><Trigger:PeakDetectHorizontal.peakDetect/></OutputArg>
            <OutputArg Name="PatchChlDepth"><Trigger:PeakDetectHorizontal.peakDepth/></OutputArg>
            <OutputArg Name="PatchChlLatitude"><Trigger:PeakDetectHorizontal.peakLatitude/></OutputArg>
            <OutputArg Name="PatchChlLongitude"><Trigger:PeakDetectHorizontal.peakLongitude/></OutputArg>
            <OutputArg Name="PatchChlDistance"><Trigger:PeakDetectHorizontal.peakDistance/></OutputArg>
        </Trigger:PeakDetectHorizontal>

    </Aggregate>

    <Aggregate Id="PeakDetectNO3">

        <While>
            <Arg Name="PeakDetectNO3Active"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mole_concentration_of_nitrate_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakNO3"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakNO3Depth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakNO3Latitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakNO3Longitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakNO3"/><Arg Name="PeakNO3Depth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="PeakDetectOil">

        <While>
            <Arg Name="PeakDetectOilActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mass_concentration_of_petroleum_hydrocarbons_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakOil"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakOilDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakOilLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakOilLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakOil"/><Arg Name="PeakOilDepth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="PeakDetectFDOM">

        <While>
            <Arg Name="PeakDetectFDOMActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:concentration_of_chromophoric_dissolved_organic_matter_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakFDOM"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakFDOMDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakFDOMTemperature"><Trigger:PeakDetectVsDepth.peakTemperature/></OutputArg>
            <OutputArg Name="PeakFDOMLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakFDOMLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakFDOM"/><Arg Name="PeakFDOMDepth"/>
        </SendData>

    </Aggregate>

</Aggregate>


2020-10-06T16:43:41.362Z,1602002621.362 [CommandLine](IMPORTANT): Running ./Missions/Insert/Science.xml
2020-10-06T16:43:41.639Z,1602002621.639 [Default] Stopped
2020-10-06T16:43:41.639Z,1602002621.639 [Default](DEBUG): Aggregate::uninitialize Default
2020-10-06T16:43:41.639Z,1602002621.639 [Default:B.GoToSurface] Stopped
2020-10-06T16:43:41.639Z,1602002621.639 [Default:B.GoToSurface](DEBUG): Uninitialize GoToSurfaceComponent.
2020-10-06T16:43:41.639Z,1602002621.639 [Default:CheckIn] Stopped
2020-10-06T16:43:41.639Z,1602002621.639 [Default:CheckIn](DEBUG): Aggregate::uninitialize Default:CheckIn
2020-10-06T16:43:41.639Z,1602002621.639 [Default:CheckIn:Read_GPS] Stopped
2020-10-06T16:43:41.639Z,1602002621.639 [MissionManager](IMPORTANT): Started mission Science
2020-10-06T16:43:41.639Z,1602002621.639 [Science] Running Loop=1
2020-10-06T16:43:41.640Z,1602002621.640 [Science](DEBUG): Aggregate::initialize Science
2020-10-06T16:43:41.640Z,1602002621.640 [Science:A] Running Loop=1
2020-10-06T16:43:41.640Z,1602002621.640 [Science:B] Running Loop=1
2020-10-06T16:43:41.640Z,1602002621.640 [Science:C] Running Loop=1
2020-10-06T16:43:41.640Z,1602002621.640 [Science:D] Running Loop=1
2020-10-06T16:43:41.640Z,1602002621.640 [Science:E] Running Loop=1
2020-10-06T16:43:41.640Z,1602002621.640 [Science:F] Running Loop=1
2020-10-06T16:43:41.640Z,1602002621.640 [Science:Read_Oil] Running Loop=1
2020-10-06T16:43:41.652Z,1602002621.652 [Science:PeakDetectChl] Running Loop=1
2020-10-06T16:43:41.652Z,1602002621.652 [Science:PeakDetectChl](DEBUG): Aggregate::initialize Science:PeakDetectChl
2020-10-06T16:43:41.653Z,1602002621.653 [Science:PeakDetectChl:A.PeakDetectVsDepth] Running Loop=1
2020-10-06T16:43:41.653Z,1602002621.653 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-10-06T16:43:41.654Z,1602002621.654 [Science:HighestChlPeakReport] Running Loop=1
2020-10-06T16:43:41.654Z,1602002621.654 [Science:HighestChlPeakReport](DEBUG): Aggregate::initialize Science:HighestChlPeakReport
2020-10-06T16:43:41.654Z,1602002621.654 [Science:HighestChlPeakReport:A.PeakDetectHorizontal] Running Loop=1
2020-10-06T16:43:41.654Z,1602002621.654 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](INFO): Initialize.
2020-10-06T16:43:41.655Z,1602002621.655 [Science:PeakDetectNO3] Running Loop=1
2020-10-06T16:43:41.655Z,1602002621.655 [Science:PeakDetectNO3](DEBUG): Aggregate::initialize Science:PeakDetectNO3
2020-10-06T16:43:41.655Z,1602002621.655 [Science:PeakDetectNO3:A.PeakDetectVsDepth] Running Loop=1
2020-10-06T16:43:41.655Z,1602002621.655 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-10-06T16:43:41.656Z,1602002621.656 [Science:PeakDetectOil] Running Loop=1
2020-10-06T16:43:41.665Z,1602002621.665 [Science:PeakDetectOil](DEBUG): Aggregate::initialize Science:PeakDetectOil
2020-10-06T16:43:41.665Z,1602002621.665 [Science:PeakDetectOil:A.PeakDetectVsDepth] Running Loop=1
2020-10-06T16:43:41.665Z,1602002621.665 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-10-06T16:43:41.666Z,1602002621.666 [Science:PeakDetectFDOM] Running Loop=1
2020-10-06T16:43:41.666Z,1602002621.666 [Science:PeakDetectFDOM](DEBUG): Aggregate::initialize Science:PeakDetectFDOM
2020-10-06T16:43:41.666Z,1602002621.666 [Science:PeakDetectFDOM:A.PeakDetectVsDepth] Running Loop=1
2020-10-06T16:43:41.666Z,1602002621.666 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-10-06T16:43:41.668Z,1602002621.668 [Science:OceanCurrent] Running Loop=1
2020-10-06T16:43:41.668Z,1602002621.668 [Science:OceanCurrent](DEBUG): Aggregate::initialize Science:OceanCurrent
2020-10-06T16:43:41.668Z,1602002621.668 [Science:OceanCurrent:A.] Running Loop=1
2020-10-06T16:43:41.668Z,1602002621.668 [Science:OceanCurrent:A.](INFO): Initializing CurrentEstimator.
2020-10-06T16:43:41.685Z,1602002621.685 [Science:PeakDetectFDOM] Stopped
2020-10-06T16:43:41.685Z,1602002621.685 [Science:PeakDetectFDOM](DEBUG): Aggregate::uninitialize Science:PeakDetectFDOM
2020-10-06T16:43:41.685Z,1602002621.685 [Science:PeakDetectFDOM:A.PeakDetectVsDepth] Stopped
2020-10-06T16:43:41.685Z,1602002621.685 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-10-06T16:43:41.685Z,1602002621.685 [Science:PeakDetectOil] Stopped
2020-10-06T16:43:41.685Z,1602002621.685 [Science:PeakDetectOil](DEBUG): Aggregate::uninitialize Science:PeakDetectOil
2020-10-06T16:43:41.686Z,1602002621.686 [Science:PeakDetectOil:A.PeakDetectVsDepth] Stopped
2020-10-06T16:43:41.686Z,1602002621.686 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-10-06T16:43:41.686Z,1602002621.686 [Science:PeakDetectNO3] Stopped
2020-10-06T16:43:41.686Z,1602002621.686 [Science:PeakDetectNO3](DEBUG): Aggregate::uninitialize Science:PeakDetectNO3
2020-10-06T16:43:41.686Z,1602002621.686 [Science:PeakDetectNO3:A.PeakDetectVsDepth] Stopped
2020-10-06T16:43:41.686Z,1602002621.686 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-10-06T16:43:41.686Z,1602002621.686 [Science:HighestChlPeakReport] Stopped
2020-10-06T16:43:41.686Z,1602002621.686 [Science:HighestChlPeakReport](DEBUG): Aggregate::uninitialize Science:HighestChlPeakReport
2020-10-06T16:43:41.686Z,1602002621.686 [Science:HighestChlPeakReport:A.PeakDetectHorizontal] Stopped
2020-10-06T16:43:41.686Z,1602002621.686 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](DEBUG): Uninitialize.
2020-10-06T16:43:41.686Z,1602002621.686 [Science:PeakDetectChl] Stopped
2020-10-06T16:43:41.686Z,1602002621.686 [Science:PeakDetectChl](DEBUG): Aggregate::uninitialize Science:PeakDetectChl
2020-10-06T16:43:41.686Z,1602002621.686 [Science:PeakDetectChl:A.PeakDetectVsDepth] Stopped
2020-10-06T16:43:41.686Z,1602002621.686 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-10-06T16:43:41.687Z,1602002621.687 [Science:OceanCurrent:A.] Running Loop=1
2020-10-06T16:43:41.687Z,1602002621.687 [Science:Read_Oil] Stopped
2020-10-06T16:43:41.687Z,1602002621.687 [Science:F] Running Loop=1
2020-10-06T16:43:41.687Z,1602002621.687 [Science:F](CRITICAL): Unable to read non-existent URI:WetLabsUBAT.biolum_potential
2020-10-06T16:43:41.687Z,1602002621.687 [Science:F](CRITICAL): Unable to read non-existent data element: WetLabsUBAT.biolum_potential
2020-10-06T16:43:41.687Z,1602002621.687 [Science:E] Running Loop=1
2020-10-06T16:43:41.688Z,1602002621.688 [Science:E](DEBUG): Initialize ReadDataComponent to sense mass_concentration_of_chlorophyll_in_sea_water
2020-10-06T16:43:41.688Z,1602002621.688 [Science:D] Stopped
2020-10-06T16:43:41.688Z,1602002621.688 [Science:C] Running Loop=1
2020-10-06T16:43:41.698Z,1602002621.698 [Science:C](DEBUG): Initialize ReadDataComponent to sense CTD_Seabird.sea_water_temperature
2020-10-06T16:43:41.698Z,1602002621.698 [Science:C](DEBUG): Initialize ReadDataComponent to sense CTD_Seabird.sea_water_salinity
2020-10-06T16:43:41.699Z,1602002621.699 [Science:B] Running Loop=1
2020-10-06T16:43:41.699Z,1602002621.699 [Science:B](DEBUG): Initialize ReadDataComponent to sense sea_water_temperature
2020-10-06T16:43:41.699Z,1602002621.699 [Science:B](DEBUG): Initialize ReadDataComponent to sense sea_water_salinity
2020-10-06T16:43:41.700Z,1602002621.700 [Science:A] Stopped
2020-10-06T16:43:41.722Z,1602002621.722 [CBIT](INFO): Critical error at 20201006T164341
2020-10-06T16:43:41.722Z,1602002621.722 [Supervisor](INFO): Stop Mission called by CBIT::checkCriticals
2020-10-06T16:43:42.009Z,1602002622.009 [WetLabsBB2FL](INFO): Powering up
2020-10-06T16:43:42.013Z,1602002622.013 [Science:F](CRITICAL): Unable to read non-existent URI:WetLabsUBAT.biolum_potential
2020-10-06T16:43:42.013Z,1602002622.013 [Science:F](CRITICAL): Unable to read non-existent data element: WetLabsUBAT.biolum_potential
2020-10-06T16:43:42.013Z,1602002622.013 [MissionManager](INFO): MissionManager is completed.
2020-10-06T16:43:42.013Z,1602002622.013 [MissionManager](INFO): Uninitializing Mission Science
2020-10-06T16:43:42.013Z,1602002622.013 [Science] Stopped
2020-10-06T16:43:42.013Z,1602002622.013 [Science](DEBUG): Aggregate::uninitialize Science
2020-10-06T16:43:42.013Z,1602002622.013 [Science:B] Stopped
2020-10-06T16:43:42.013Z,1602002622.013 [Science:C] Stopped
2020-10-06T16:43:42.014Z,1602002622.014 [Science:E] Stopped
2020-10-06T16:43:42.014Z,1602002622.014 [Science:F] Stopped
2020-10-06T16:43:42.014Z,1602002622.014 [Science:OceanCurrent] Stopped
2020-10-06T16:43:42.014Z,1602002622.014 [Science:OceanCurrent](DEBUG): Aggregate::uninitialize Science:OceanCurrent
2020-10-06T16:43:42.014Z,1602002622.014 [Science:OceanCurrent:A.] Stopped
2020-10-06T16:43:42.069Z,1602002622.069 [CBIT](INFO): Critical error at 20201006T164342
2020-10-06T16:43:42.406Z,1602002622.406 [MissionManager](IMPORTANT): Started mission Default
2020-10-06T16:43:42.406Z,1602002622.406 [Default] Running Loop=1
2020-10-06T16:43:42.406Z,1602002622.406 [Default](DEBUG): Aggregate::initialize Default
2020-10-06T16:43:42.406Z,1602002622.406 [Default:B.GoToSurface] Running Loop=1
2020-10-06T16:43:42.406Z,1602002622.406 [Default:B.GoToSurface](DEBUG): Initialize GoToSurfaceComponent.
2020-10-06T16:43:42.406Z,1602002622.406 [Default:B.GoToSurface](DEBUG): No depth rate setting specified. Using default value of nan m/s.
2020-10-06T16:43:42.407Z,1602002622.407 [Default:B.GoToSurface](DEBUG): No pitch setting specified. Using default value of nan degrees.
2020-10-06T16:43:42.407Z,1602002622.407 [Default:B.GoToSurface](DEBUG): No speed setting specified. Using default value of 1.000000 m/s.
2020-10-06T16:43:42.407Z,1602002622.407 [Default:B.GoToSurface](DEBUG): No surface timeout specified. Using default value of 1000.000000 seconds.
2020-10-06T16:43:42.408Z,1602002622.408 [Default:B.GoToSurface](INFO): Received pitch timeout configuration 60.000000 seconds.
2020-10-06T16:43:42.408Z,1602002622.408 [Default:A.Wait] Running Loop=1
2020-10-06T16:43:42.408Z,1602002622.408 [Default:A.Wait](DEBUG): Initialize Wait Component.
2020-10-06T16:43:44.612Z,1602002624.612 [WetLabsBB2FL](INFO): Powering down
2020-10-06T16:43:45.648Z,1602002625.648 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:43:47.681Z,1602002627.681 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:43:49.886Z,1602002629.886 [CommandLine](IMPORTANT): got command show variable par
2020-10-06T16:43:49.928Z,1602002629.928 [CommandLine](IMPORTANT): PAR_Licor.loadControl (none)
2020-10-06T16:43:49.928Z,1602002629.928 [CommandLine](IMPORTANT): PAR_Licor.ad (none)
2020-10-06T16:43:49.929Z,1602002629.929 [CommandLine](IMPORTANT): PAR_Licor.adRes (bit)
2020-10-06T16:43:49.929Z,1602002629.929 [CommandLine](IMPORTANT): PAR_Licor.adTimeout (millisecond)
2020-10-06T16:43:49.929Z,1602002629.929 [CommandLine](IMPORTANT): PAR_Licor.adVref (volt)
2020-10-06T16:43:49.939Z,1602002629.939 [CommandLine](IMPORTANT): PAR_Licor.loadAtStartup (bool)
2020-10-06T16:43:49.939Z,1602002629.939 [CommandLine](IMPORTANT): PAR_Licor.simulateHardware (bool)
2020-10-06T16:43:49.940Z,1602002629.940 [CommandLine](IMPORTANT): PAR_Licor.adcCal (microampere_per_count)
2020-10-06T16:43:49.940Z,1602002629.940 [CommandLine](IMPORTANT): PAR_Licor.darkCount (count)
2020-10-06T16:43:49.940Z,1602002629.940 [CommandLine](IMPORTANT): PAR_Licor.maxBound (micromole_per_second_per_square_meter)
2020-10-06T16:43:49.941Z,1602002629.941 [CommandLine](IMPORTANT): PAR_Licor.maxValidPitch (degree)
2020-10-06T16:43:49.941Z,1602002629.941 [CommandLine](IMPORTANT): PAR_Licor.minBound (micromole_per_second_per_square_meter)
2020-10-06T16:43:49.941Z,1602002629.941 [CommandLine](IMPORTANT): PAR_Licor.minValidPitch (degree)
2020-10-06T16:43:49.942Z,1602002629.942 [CommandLine](IMPORTANT): PAR_Licor.multiplier (micromole_per_second_per_square_meter_per_microampere)
2020-10-06T16:43:49.942Z,1602002629.942 [CommandLine](IMPORTANT): PAR_Licor.parCal (none)
2020-10-06T16:43:49.942Z,1602002629.942 [CommandLine](IMPORTANT): PAR_Licor.serial (none)
2020-10-06T16:43:50.049Z,1602002630.049 [CommandLine](IMPORTANT): PAR_Licor.component_voltage (volt)
2020-10-06T16:43:50.050Z,1602002630.050 [CommandLine](IMPORTANT): PAR_Licor.component_avgVoltage (volt)
2020-10-06T16:43:50.050Z,1602002630.050 [CommandLine](IMPORTANT): PAR_Licor.component_current (milliampere)
2020-10-06T16:43:50.050Z,1602002630.050 [CommandLine](IMPORTANT): PAR_Licor.component_avgCurrent (milliampere)
2020-10-06T16:43:50.051Z,1602002630.051 [CommandLine](IMPORTANT): PAR_Licor.downwelling_photosynthetic_photon_flux_in_sea_water (micromole_per_second_per_square_meter)
2020-10-06T16:43:50.051Z,1602002630.051 [CommandLine](IMPORTANT): PAR_Licor.adcCount (count)
2020-10-06T16:43:50.884Z,1602002630.884 [DeadReckonUsingMultipleVelocitySources] Software Fault, FailCount= 2
2020-10-06T16:43:50.885Z,1602002630.885 [DeadReckonUsingMultipleVelocitySources](ERROR): Software Fault
2020-10-06T16:43:50.895Z,1602002630.895 [CBIT](ERROR): Software Fault in component: DeadReckonUsingMultipleVelocitySources
2020-10-06T16:43:51.310Z,1602002631.310 [CBIT](INFO): Clearing failed state for component DeadReckonUsingMultipleVelocitySources
2020-10-06T16:43:51.310Z,1602002631.310 [DeadReckonUsingMultipleVelocitySources] No Fault, FailCount= 2
2020-10-06T16:43:55.738Z,1602002635.738 [Default:A.Wait](INFO): Done Waiting.
2020-10-06T16:43:55.738Z,1602002635.738 [Default:A.Wait] Stopped
2020-10-06T16:43:55.738Z,1602002635.738 [Default:A.Wait](DEBUG): Uninitialize Wait Component.
2020-10-06T16:43:56.138Z,1602002636.138 [Default:CheckIn] Running Loop=1
2020-10-06T16:43:56.138Z,1602002636.138 [Default:CheckIn](DEBUG): Aggregate::initialize Default:CheckIn
2020-10-06T16:43:56.138Z,1602002636.138 [Default:CheckIn:Read_GPS] Running Loop=1
2020-10-06T16:44:05.290Z,1602002645.290 [CommandLine](IMPORTANT): got command report mod PAR_Licor.downwelling_photosynthetic_photon_flux_in_sea_water
2020-10-06T16:44:05.429Z,1602002645.429 [Reporter](INFO): PAR_Licor.downwelling_photosynthetic_photon_flux_in_sea_water 8.406653 umol/s/m2
2020-10-06T16:44:06.259Z,1602002646.259 [Reporter](INFO): PAR_Licor.downwelling_photosynthetic_photon_flux_in_sea_water 8.393597 umol/s/m2
2020-10-06T16:44:06.664Z,1602002646.664 [Reporter](INFO): PAR_Licor.downwelling_photosynthetic_photon_flux_in_sea_water 8.419709 umol/s/m2
2020-10-06T16:44:07.085Z,1602002647.085 [Reporter](INFO): PAR_Licor.downwelling_photosynthetic_photon_flux_in_sea_water 8.442558 umol/s/m2
2020-10-06T16:44:07.465Z,1602002647.465 [Reporter](INFO): PAR_Licor.downwelling_photosynthetic_photon_flux_in_sea_water 8.427870 umol/s/m2
2020-10-06T16:44:07.886Z,1602002647.886 [Reporter](INFO): PAR_Licor.downwelling_photosynthetic_photon_flux_in_sea_water 8.467039 umol/s/m2
2020-10-06T16:44:08.278Z,1602002648.278 [Reporter](INFO): PAR_Licor.downwelling_photosynthetic_photon_flux_in_sea_water 8.351163 umol/s/m2
2020-10-06T16:44:08.667Z,1602002648.667 [Reporter](INFO): PAR_Licor.downwelling_photosynthetic_photon_flux_in_sea_water 8.321787 umol/s/m2
2020-10-06T16:44:09.073Z,1602002649.073 [Reporter](INFO): PAR_Licor.downwelling_photosynthetic_photon_flux_in_sea_water 8.365852 umol/s/m2
2020-10-06T16:44:09.513Z,1602002649.513 [Reporter](INFO): PAR_Licor.downwelling_photosynthetic_photon_flux_in_sea_water 8.357692 umol/s/m2
2020-10-06T16:44:09.923Z,1602002649.923 [Reporter](INFO): PAR_Licor.downwelling_photosynthetic_photon_flux_in_sea_water 8.400125 umol/s/m2
2020-10-06T16:44:10.357Z,1602002650.357 [Reporter](INFO): PAR_Licor.downwelling_photosynthetic_photon_flux_in_sea_water 8.352796 umol/s/m2
2020-10-06T16:44:10.735Z,1602002650.735 [Reporter](INFO): PAR_Licor.downwelling_photosynthetic_photon_flux_in_sea_water 8.382173 umol/s/m2
2020-10-06T16:44:11.113Z,1602002651.113 [Reporter](INFO): PAR_Licor.downwelling_photosynthetic_photon_flux_in_sea_water 8.352796 umol/s/m2
2020-10-06T16:44:11.529Z,1602002651.529 [Reporter](INFO): PAR_Licor.downwelling_photosynthetic_photon_flux_in_sea_water 8.360955 umol/s/m2
2020-10-06T16:44:11.901Z,1602002651.901 [Reporter](INFO): PAR_Licor.downwelling_photosynthetic_photon_flux_in_sea_water 8.378908 umol/s/m2
2020-10-06T16:44:12.302Z,1602002652.302 [Reporter](INFO): PAR_Licor.downwelling_photosynthetic_photon_flux_in_sea_water 8.302202 umol/s/m2
2020-10-06T16:44:12.724Z,1602002652.724 [Reporter](INFO): PAR_Licor.downwelling_photosynthetic_photon_flux_in_sea_water 8.336475 umol/s/m2
2020-10-06T16:44:13.135Z,1602002653.135 [Reporter](INFO): PAR_Licor.downwelling_photosynthetic_photon_flux_in_sea_water 8.421341 umol/s/m2
2020-10-06T16:44:13.485Z,1602002653.485 [CommandLine](IMPORTANT): got command report clear
2020-10-06T16:44:18.359Z,1602002658.359 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:44:19.326Z,1602002659.326 [CommandLine](IMPORTANT): got command quit
2020-10-06T16:44:20.013Z,1602002660.013 [BuoyancyServo](FAULT): is needed (data)
2020-10-06T16:44:20.333Z,1602002660.333 [CommandLine ThreadHandler](INFO): Uninitializing protected caller thread.
2020-10-06T16:44:20.333Z,1602002660.333 [CommandLine ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:20.352Z,1602002660.352 [Supervisor](DEBUG): Uninitializing supervisor and starting cleanup.  Bye!
2020-10-06T16:44:20.353Z,1602002660.353 [CommandLine ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:20.353Z,1602002660.353 [CommandLine](INFO): Join timeout helper Thread ID is 1201
2020-10-06T16:44:20.368Z,1602002660.368 [ComponentRegistry](INFO): Shutting down NavChartDb ThreadHandler
2020-10-06T16:44:20.368Z,1602002660.368 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:20.369Z,1602002660.369 [NavChartDb](INFO): Join timeout helper Thread ID is 1202
2020-10-06T16:44:20.481Z,1602002660.481 [NavChartDb ThreadHandler](INFO): Uninitializing protected caller thread.
2020-10-06T16:44:20.482Z,1602002660.482 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:20.489Z,1602002660.489 [ComponentRegistry](INFO): Shutting down WetLabsBB2FL ThreadHandler
2020-10-06T16:44:20.489Z,1602002660.489 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:20.490Z,1602002660.490 [WetLabsBB2FL](INFO): Join timeout helper Thread ID is 1203
2020-10-06T16:44:20.821Z,1602002660.821 [WetLabsBB2FL ThreadHandler](INFO): Uninitializing protected caller thread.
2020-10-06T16:44:20.821Z,1602002660.821 [WetLabsBB2FL](INFO): Powering down
2020-10-06T16:44:20.822Z,1602002660.822 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:20.836Z,1602002660.836 [ComponentRegistry](INFO): Shutting down CTD_Seabird ThreadHandler
2020-10-06T16:44:20.836Z,1602002660.836 [CTD_Seabird ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:20.837Z,1602002660.837 [CTD_Seabird](INFO): Join timeout helper Thread ID is 1204
2020-10-06T16:44:21.177Z,1602002661.177 [CTD_Seabird](INFO): Powering down
2020-10-06T16:44:21.188Z,1602002661.188 [CTD_Seabird ThreadHandler](INFO): Uninitializing protected caller thread.
2020-10-06T16:44:21.189Z,1602002661.189 [CTD_Seabird](INFO): Powering down
2020-10-06T16:44:21.200Z,1602002661.200 [CTD_Seabird ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:21.220Z,1602002661.220 [ComponentRegistry](INFO): Shutting down BackSeatDriver ThreadHandler
2020-10-06T16:44:21.221Z,1602002661.221 [BackSeatDriver ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:21.221Z,1602002661.221 [BackSeatDriver](INFO): Join timeout helper Thread ID is 1205
2020-10-06T16:44:21.517Z,1602002661.517 [BackSeatDriver ThreadHandler](INFO): Uninitializing protected caller thread.
2020-10-06T16:44:21.518Z,1602002661.518 [BackSeatDriver ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:21.531Z,1602002661.531 [ComponentRegistry](INFO): Shutting down Radio_Surface ThreadHandler
2020-10-06T16:44:21.531Z,1602002661.531 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:21.533Z,1602002661.533 [Radio_Surface](INFO): Join timeout helper Thread ID is 1206
2020-10-06T16:44:21.821Z,1602002661.821 [Radio_Surface](INFO): Powering down
2020-10-06T16:44:21.822Z,1602002661.822 [Radio_Surface ThreadHandler](INFO): Uninitializing protected caller thread.
2020-10-06T16:44:21.822Z,1602002661.822 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:21.837Z,1602002661.837 [ComponentRegistry](INFO): Shutting down Onboard ThreadHandler
2020-10-06T16:44:21.837Z,1602002661.837 [Onboard ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:21.838Z,1602002661.838 [Onboard](INFO): Join timeout helper Thread ID is 1207
2020-10-06T16:44:22.665Z,1602002662.665 [DataOverHttps](INFO): Radio surface powered OFF, will not connect.
2020-10-06T16:44:24.404Z,1602002664.404 [BPC1](INFO): Calculating totals. Valid battery stick count: 56. Valid reserve battery stick count: 6.
2020-10-06T16:44:24.408Z,1602002664.408 [BPC1](INFO): Received data from all battery sticks.
2020-10-06T16:44:24.840Z,1602002664.840 [Onboard ThreadHandler](INFO): Uninitializing protected caller thread.
2020-10-06T16:44:24.841Z,1602002664.841 [Onboard ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:24.861Z,1602002664.861 [ComponentRegistry](INFO): Shutting down DataOverHttps ThreadHandler
2020-10-06T16:44:24.861Z,1602002664.861 [DataOverHttps ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:24.862Z,1602002664.862 [DataOverHttps](INFO): Join timeout helper Thread ID is 1208
2020-10-06T16:44:25.676Z,1602002665.676 [DataOverHttps ThreadHandler](INFO): Uninitializing protected caller thread.
2020-10-06T16:44:25.677Z,1602002665.677 [DataOverHttps ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:25.685Z,1602002665.685 [ComponentRegistry](INFO): Shutting down logger ThreadHandler
2020-10-06T16:44:25.685Z,1602002665.685 [logger ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:25.686Z,1602002665.686 [logger](INFO): Join timeout helper Thread ID is 1209
2020-10-06T16:44:25.703Z,1602002665.703 [logger ThreadHandler](INFO): Uninitializing protected caller thread.
2020-10-06T16:44:25.703Z,1602002665.703 [logger ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:25.709Z,1602002665.709 [ComponentRegistry](INFO): Shutting down CommandLine ThreadHandler
2020-10-06T16:44:25.709Z,1602002665.709 [CommandLine ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:25.709Z,1602002665.709 [ComponentRegistry](INFO): Shutting down controlThread ThreadHandler
2020-10-06T16:44:25.709Z,1602002665.709 [controlThread ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:25.710Z,1602002665.710 [controlThread](INFO): Join timeout helper Thread ID is 1210
2020-10-06T16:44:25.996Z,1602002665.996 [controlThread ThreadHandler](INFO): Uninitializing protected caller thread.
2020-10-06T16:44:25.997Z,1602002665.997 [controlThread](DEBUG): Uninitializing ControlThread
2020-10-06T16:44:25.997Z,1602002665.997 [AHRS_M2](INFO): Powering down
2020-10-06T16:44:26.069Z,1602002666.069 [NAL9602](INFO): Powering down
2020-10-06T16:44:26.140Z,1602002666.140 [RDI_Pathfinder](INFO): Powering down
2020-10-06T16:44:26.141Z,1602002666.141 [DAT](INFO): Powering down
2020-10-06T16:44:26.263Z,1602002666.263 [DepthRateCalculator](DEBUG): Uninitializing DepthRateCalculator.
2020-10-06T16:44:26.264Z,1602002666.264 [ElevatorOffsetCalculator](DEBUG): Uninitializing ElevatorOffsetCalculator.
2020-10-06T16:44:26.264Z,1602002666.264 [NavChart](DEBUG): Uninitialize NavChart Navigation.
2020-10-06T16:44:26.265Z,1602002666.265 [MissionManager](INFO): Uninitializing Mission Default
2020-10-06T16:44:26.265Z,1602002666.265 [Default] Stopped
2020-10-06T16:44:26.265Z,1602002666.265 [Default](DEBUG): Aggregate::uninitialize Default
2020-10-06T16:44:26.265Z,1602002666.265 [Default:B.GoToSurface] Stopped
2020-10-06T16:44:26.265Z,1602002666.265 [Default:B.GoToSurface](DEBUG): Uninitialize GoToSurfaceComponent.
2020-10-06T16:44:26.265Z,1602002666.265 [Default:CheckIn] Stopped
2020-10-06T16:44:26.265Z,1602002666.265 [Default:CheckIn](DEBUG): Aggregate::uninitialize Default:CheckIn
2020-10-06T16:44:26.265Z,1602002666.265 [Default:CheckIn:Read_GPS] Stopped
2020-10-06T16:44:26.268Z,1602002666.268 [VerticalControl](DEBUG): Uninitialize VerticalControlComponent.
2020-10-06T16:44:26.268Z,1602002666.268 [HorizontalControl](DEBUG): Uninitialize HorizontalControlComponent.
2020-10-06T16:44:26.268Z,1602002666.268 [SpeedControl](DEBUG): Uninitialize SpeedControlComponent.
2020-10-06T16:44:26.269Z,1602002666.269 [LoopControl](DEBUG): Uninitialize LoopControlComponent.
2020-10-06T16:44:26.269Z,1602002666.269 [BuoyancyServo](DEBUG): Uninitialize Buoyancy Servo.
2020-10-06T16:44:26.269Z,1602002666.269 [BuoyancyServo](INFO): Powering down
2020-10-06T16:44:26.281Z,1602002666.281 [ElevatorServo](DEBUG): Uninitialize Elevator Servo.
2020-10-06T16:44:26.281Z,1602002666.281 [ElevatorServo](INFO): Powering down
2020-10-06T16:44:26.281Z,1602002666.281 [MassServo](DEBUG): Uninitialize Mass Servo.
2020-10-06T16:44:26.282Z,1602002666.282 [MassServo](INFO): Powering down
2020-10-06T16:44:26.282Z,1602002666.282 [RudderServo](DEBUG): Uninitialize Rudder Servo.
2020-10-06T16:44:26.282Z,1602002666.282 [RudderServo](INFO): Powering down
2020-10-06T16:44:26.283Z,1602002666.283 [ThrusterServo](DEBUG): Uninitialize Thruster Servo.
2020-10-06T16:44:26.283Z,1602002666.283 [ThrusterServo](INFO): Powering down
2020-10-06T16:44:26.284Z,1602002666.284 [SBIT](DEBUG): Uninitialize SBIT Component.
2020-10-06T16:44:26.284Z,1602002666.284 [IBIT](DEBUG): Uninitialize IBIT Component.
2020-10-06T16:44:26.285Z,1602002666.285 [CBIT](DEBUG): Uninitialize CBIT Component.
2020-10-06T16:44:26.285Z,1602002666.285 [CBIT](DEBUG): Powering off loads.
2020-10-06T16:44:26.296Z,1602002666.296 [CBIT](DEBUG): Disabling WDT.
2020-10-06T16:44:26.308Z,1602002666.308 [CBIT](DEBUG): Opening all GF detection circuits.
2020-10-06T16:44:26.309Z,1602002666.309 [controlThread ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:26.413Z,1602002666.413 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:26.415Z,1602002666.415 [Onboard ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:26.421Z,1602002666.421 [DataOverHttps ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:26.478Z,1602002666.478 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:26.484Z,1602002666.484 [CTD_Seabird ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:26.487Z,1602002666.487 [BackSeatDriver ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:26.497Z,1602002666.497 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2020-10-06T16:44:26.559Z,1602002666.559 [logger ThreadHandler](INFO): Thread cancelled.