2020-03-04T17:12:48.336Z,1583341968.336 [Supervisor](DEBUG): Initializing supervisor.
2020-03-04T17:12:48.339Z,1583341968.339 [SyncHandler](DEBUG): Created PCaller Thread at 404514E0
2020-03-04T17:12:48.339Z,1583341968.339 [SyncHandler](INFO): Protected caller Thread ID is 1170
2020-03-04T17:12:48.340Z,1583341968.340 [ComponentRegistry](DEBUG): Component "controlThread" handled in its own thread.
2020-03-04T17:12:48.341Z,1583341968.341 [controlThread ThreadHandler](DEBUG): Created PCaller Thread at 404814E0
2020-03-04T17:12:48.341Z,1583341968.341 [controlThread ThreadHandler](INFO): Protected caller Thread ID is 1171
2020-03-04T17:12:48.344Z,1583341968.344 [ComponentRegistry](DEBUG): SyncComponent "CycleStarter" handled in the control thread.
2020-03-04T17:12:48.355Z,1583341968.355 [ComponentRegistry](DEBUG): Component "CommandLine" handled in its own thread.
2020-03-04T17:12:48.356Z,1583341968.356 [CommandLine ThreadHandler](DEBUG): Created PCaller Thread at 404B14E0
2020-03-04T17:12:48.356Z,1583341968.356 [CommandLine ThreadHandler](INFO): Protected caller Thread ID is 1172
2020-03-04T17:12:48.357Z,1583341968.357 [ComponentRegistry](DEBUG): Component "logger" handled in its own thread.
2020-03-04T17:12:48.358Z,1583341968.358 [logger ThreadHandler](DEBUG): Created PCaller Thread at 404E14E0
2020-03-04T17:12:48.358Z,1583341968.358 [logger ThreadHandler](INFO): Protected caller Thread ID is 1173
2020-03-04T17:12:48.360Z,1583341968.360 [ComponentRegistry](DEBUG): SyncComponent "LogSplitter" handled in the control thread.
2020-03-04T17:12:48.361Z,1583341968.361 [Supervisor](INFO): Looking for Config files in directory: Config/
2020-03-04T17:12:48.362Z,1583341968.362 [Supervisor](INFO): Opening Config file at: Config/secure.cfg
2020-03-04T17:12:48.454Z,1583341968.454 [ComponentRegistry](DEBUG): Loaded Config Component "Config/secure
2020-03-04T17:12:48.455Z,1583341968.455 [Supervisor](INFO): Opening Config file at: Config/Navigation.cfg
2020-03-04T17:12:48.650Z,1583341968.650 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Navigation
2020-03-04T17:12:48.651Z,1583341968.651 [Supervisor](INFO): Opening Config file at: Config/Estimation.cfg
2020-03-04T17:12:48.780Z,1583341968.780 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Estimation
2020-03-04T17:12:48.781Z,1583341968.781 [Supervisor](INFO): Opening Config file at: Config/Sensor.cfg
2020-03-04T17:12:49.345Z,1583341969.345 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sensor
2020-03-04T17:12:49.346Z,1583341969.346 [Supervisor](INFO): Opening Config file at: Config/vehicle.cfg
2020-03-04T17:12:49.775Z,1583341969.775 [ComponentRegistry](DEBUG): Loaded Config Component "Config/vehicle
2020-03-04T17:12:49.775Z,1583341969.775 [Supervisor](INFO): Opening Config file at: Config/Simulator.cfg
2020-03-04T17:12:50.221Z,1583341970.221 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Simulator
2020-03-04T17:12:50.221Z,1583341970.221 [Supervisor](INFO): Opening Config file at: Config/Servo.cfg
2020-03-04T17:12:50.508Z,1583341970.508 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Servo
2020-03-04T17:12:50.509Z,1583341970.509 [Supervisor](INFO): Opening Config file at: Config/Control.cfg
2020-03-04T17:12:50.815Z,1583341970.815 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Control
2020-03-04T17:12:50.816Z,1583341970.816 [Supervisor](INFO): Opening Config file at: Config/Science.cfg
2020-03-04T17:12:51.282Z,1583341971.282 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Science
2020-03-04T17:12:51.282Z,1583341971.282 [Supervisor](INFO): Opening Config file at: Config/Derivation.cfg
2020-03-04T17:12:51.429Z,1583341971.429 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Derivation
2020-03-04T17:12:51.430Z,1583341971.430 [Supervisor](INFO): Opening Config file at: Config/workSite.cfg
2020-03-04T17:12:51.531Z,1583341971.531 [ComponentRegistry](DEBUG): Loaded Config Component "Config/workSite
2020-03-04T17:12:51.531Z,1583341971.531 [Supervisor](INFO): Opening Config file at: Config/Guidance.cfg
2020-03-04T17:12:51.610Z,1583341971.610 [Supervisor](INFO): Opening Config file at: Config/Sample.cfg
2020-03-04T17:12:51.707Z,1583341971.707 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Sample
2020-03-04T17:12:51.708Z,1583341971.708 [Supervisor](INFO): Opening Config file at: Config/logger.cfg
2020-03-04T17:12:51.889Z,1583341971.889 [ComponentRegistry](DEBUG): Loaded Config Component "Config/logger
2020-03-04T17:12:51.889Z,1583341971.889 [Supervisor](INFO): Opening Config file at: Config/BIT.cfg
2020-03-04T17:12:52.094Z,1583341972.094 [ComponentRegistry](DEBUG): Loaded Config Component "Config/BIT
2020-03-04T17:12:52.096Z,1583341972.096 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-makai/
2020-03-04T17:12:52.097Z,1583341972.097 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/secure.cfg
2020-03-04T17:12:52.177Z,1583341972.177 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Battery.cfg
2020-03-04T17:12:52.399Z,1583341972.399 [ComponentRegistry](DEBUG): Loaded Config Component "Config/Battery
2020-03-04T17:12:52.400Z,1583341972.400 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Navigation.cfg
2020-03-04T17:12:52.493Z,1583341972.493 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Sensor.cfg
2020-03-04T17:12:52.655Z,1583341972.655 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/vehicle.cfg
2020-03-04T17:12:52.855Z,1583341972.855 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Simulator.cfg
2020-03-04T17:12:52.938Z,1583341972.938 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Servo.cfg
2020-03-04T17:12:53.035Z,1583341973.035 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Control.cfg
2020-03-04T17:12:53.140Z,1583341973.140 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/Science.cfg
2020-03-04T17:12:53.676Z,1583341973.676 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/logger.cfg
2020-03-04T17:12:53.813Z,1583341973.813 [Supervisor](INFO): Opening Config file at: Config/lrauv-makai/BIT.cfg
2020-03-04T17:12:54.023Z,1583341974.023 [Supervisor](INFO): Looking for Config files in directory: Config/lrauv-makai/root/
2020-03-04T17:12:54.024Z,1583341974.024 [Supervisor](IMPORTANT): Reading configuration overrides from Data/persisted.cfg
2020-03-04T17:12:54.033Z,1583341974.033 [Module Loader](DEBUG): Loading Module at Modules/Simulator.so
2020-03-04T17:12:54.215Z,1583341974.215 [Module Loader](DEBUG): Loaded Module: Simulator (This is the module containing the Simulator)
2020-03-04T17:12:54.215Z,1583341974.215 [Module Loader](DEBUG): Loading Module at Modules/Servo.so
2020-03-04T17:12:54.450Z,1583341974.450 [BuoyancyServo] Loaded
2020-03-04T17:12:54.451Z,1583341974.451 [ComponentRegistry](DEBUG): SyncComponent "BuoyancyServo" handled in the control thread.
2020-03-04T17:12:54.466Z,1583341974.466 [ElevatorServo] Loaded
2020-03-04T17:12:54.466Z,1583341974.466 [ComponentRegistry](DEBUG): SyncComponent "ElevatorServo" handled in the control thread.
2020-03-04T17:12:54.480Z,1583341974.480 [MassServo] Loaded
2020-03-04T17:12:54.480Z,1583341974.480 [ComponentRegistry](DEBUG): SyncComponent "MassServo" handled in the control thread.
2020-03-04T17:12:54.495Z,1583341974.495 [RudderServo] Loaded
2020-03-04T17:12:54.496Z,1583341974.496 [ComponentRegistry](DEBUG): SyncComponent "RudderServo" handled in the control thread.
2020-03-04T17:12:54.510Z,1583341974.510 [ThrusterServo] Loaded
2020-03-04T17:12:54.510Z,1583341974.510 [ComponentRegistry](DEBUG): SyncComponent "ThrusterServo" handled in the control thread.
2020-03-04T17:12:54.510Z,1583341974.510 [Module Loader](DEBUG): Loaded Module: Servo (This is the module containing motor controllers)
2020-03-04T17:12:54.511Z,1583341974.511 [Module Loader](DEBUG): Loading Module at Modules/BIT.so
2020-03-04T17:12:54.642Z,1583341974.642 [SBIT](DEBUG): Construct Startup Built In Test.
2020-03-04T17:12:54.670Z,1583341974.670 [SBIT] Loaded
2020-03-04T17:12:54.670Z,1583341974.670 [ComponentRegistry](DEBUG): SyncComponent "SBIT" handled in the control thread.
2020-03-04T17:12:54.671Z,1583341974.671 [IBIT](DEBUG): Construct Initiated Built In Test.
2020-03-04T17:12:54.700Z,1583341974.700 [IBIT] Loaded
2020-03-04T17:12:54.700Z,1583341974.700 [ComponentRegistry](DEBUG): SyncComponent "IBIT" handled in the control thread.
2020-03-04T17:12:54.703Z,1583341974.703 [CBIT](DEBUG): Construct Continuous Built In Test.
2020-03-04T17:12:55.086Z,1583341975.086 [CBIT] Loaded
2020-03-04T17:12:55.086Z,1583341975.086 [ComponentRegistry](DEBUG): SyncComponent "CBIT" handled in the control thread.
2020-03-04T17:12:55.087Z,1583341975.087 [Module Loader](DEBUG): Loaded Module: BIT (Contains the BuiltInTest components, such as C Built In Test)
2020-03-04T17:12:55.087Z,1583341975.087 [Module Loader](DEBUG): Loading Module at Modules/Science.so
2020-03-04T17:12:55.286Z,1583341975.286 [ESPComponent] Loaded
2020-03-04T17:12:55.286Z,1583341975.286 [ComponentRegistry](DEBUG): SyncComponent "ESPComponent" handled in the control thread.
2020-03-04T17:12:55.300Z,1583341975.300 [PAR_Licor] Loaded
2020-03-04T17:12:55.301Z,1583341975.301 [ComponentRegistry](DEBUG): SyncComponent "PAR_Licor" handled in the control thread.
2020-03-04T17:12:55.307Z,1583341975.307 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.Output470
2020-03-04T17:12:55.307Z,1583341975.307 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: Output470
2020-03-04T17:12:55.313Z,1583341975.313 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.Output650
2020-03-04T17:12:55.313Z,1583341975.313 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: Output650
2020-03-04T17:12:55.317Z,1583341975.317 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.OutputChl
2020-03-04T17:12:55.318Z,1583341975.318 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: OutputChl
2020-03-04T17:12:55.322Z,1583341975.322 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.VolumeScatCoeff117deg470nm
2020-03-04T17:12:55.322Z,1583341975.322 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: VolumeScatCoeff117deg470nm
2020-03-04T17:12:55.326Z,1583341975.326 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.VolumeScatCoeff117deg650nm
2020-03-04T17:12:55.326Z,1583341975.326 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: VolumeScatCoeff117deg650nm
2020-03-04T17:12:55.331Z,1583341975.331 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.BackscatteringCoeff470nm
2020-03-04T17:12:55.331Z,1583341975.331 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: BackscatteringCoeff470nm
2020-03-04T17:12:55.335Z,1583341975.335 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.BackscatteringCoeff650nm
2020-03-04T17:12:55.335Z,1583341975.335 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: BackscatteringCoeff650nm
2020-03-04T17:12:55.339Z,1583341975.339 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): mass_concentration_of_chlorophyll_in_sea_water
2020-03-04T17:12:55.344Z,1583341975.344 [WetLabsBB2FL](INFO): created writer for : mass_concentration_of_chlorophyll_in_sea_water
2020-03-04T17:12:55.345Z,1583341975.345 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.bin_median_mass_concentration_of_chlorophyll_in_sea_water
2020-03-04T17:12:55.345Z,1583341975.345 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: bin_median_mass_concentration_of_chlorophyll_in_sea_water
2020-03-04T17:12:55.349Z,1583341975.349 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.bin_mean_mass_concentration_of_chlorophyll_in_sea_water
2020-03-04T17:12:55.349Z,1583341975.349 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: bin_mean_mass_concentration_of_chlorophyll_in_sea_water
2020-03-04T17:12:55.354Z,1583341975.353 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(DAtaURI): WetLabsBB2FL.bin_variance_mass_concentration_of_chlorophyll_in_sea_water
2020-03-04T17:12:55.354Z,1583341975.354 [WetLabsBB2FL](DEBUG): LcmSlateWriter::add(): dataName: bin_variance_mass_concentration_of_chlorophyll_in_sea_water
2020-03-04T17:12:55.358Z,1583341975.358 [WetLabsBB2FL] Loaded
2020-03-04T17:12:55.358Z,1583341975.358 [ComponentRegistry](DEBUG): Component "WetLabsBB2FL" handled in its own thread.
2020-03-04T17:12:55.359Z,1583341975.359 [WetLabsBB2FL ThreadHandler](DEBUG): Created PCaller Thread at 4066C4E0
2020-03-04T17:12:55.360Z,1583341975.360 [WetLabsBB2FL ThreadHandler](INFO): Protected caller Thread ID is 1253
2020-03-04T17:12:55.360Z,1583341975.360 [Module Loader](DEBUG): Loaded Module: Science (Contains the science components)
2020-03-04T17:12:55.361Z,1583341975.361 [Module Loader](DEBUG): Loading Module at Modules/Derivation.so
2020-03-04T17:12:55.402Z,1583341975.402 [DepthRateCalculator] Loaded
2020-03-04T17:12:55.402Z,1583341975.402 [ComponentRegistry](DEBUG): SyncComponent "DepthRateCalculator" handled in the control thread.
2020-03-04T17:12:55.408Z,1583341975.408 [PitchRateCalculator] Loaded
2020-03-04T17:12:55.408Z,1583341975.408 [ComponentRegistry](DEBUG): SyncComponent "PitchRateCalculator" handled in the control thread.
2020-03-04T17:12:55.423Z,1583341975.423 [SpeedCalculator] Loaded
2020-03-04T17:12:55.424Z,1583341975.424 [ComponentRegistry](DEBUG): SyncComponent "SpeedCalculator" handled in the control thread.
2020-03-04T17:12:55.445Z,1583341975.445 [TempGradientCalculator] Loaded
2020-03-04T17:12:55.445Z,1583341975.445 [ComponentRegistry](DEBUG): SyncComponent "TempGradientCalculator" handled in the control thread.
2020-03-04T17:12:55.450Z,1583341975.450 [YawRateCalculator] Loaded
2020-03-04T17:12:55.451Z,1583341975.451 [ComponentRegistry](DEBUG): SyncComponent "YawRateCalculator" handled in the control thread.
2020-03-04T17:12:55.483Z,1583341975.483 [ElevatorOffsetCalculator] Loaded
2020-03-04T17:12:55.483Z,1583341975.483 [ComponentRegistry](DEBUG): SyncComponent "ElevatorOffsetCalculator" handled in the control thread.
2020-03-04T17:12:55.483Z,1583341975.483 [Module Loader](DEBUG): Loaded Module: Derivation (Contains the base derivation components)
2020-03-04T17:12:55.484Z,1583341975.484 [Module Loader](DEBUG): Loading Module at Modules/Trigger.so
2020-03-04T17:12:55.516Z,1583341975.516 [Module Loader](DEBUG): Loaded Module: Trigger (Contains triggers for use in missions)
2020-03-04T17:12:55.516Z,1583341975.516 [Module Loader](DEBUG): Loading Module at Modules/Navigation.so
2020-03-04T17:12:55.616Z,1583341975.616 [DeadReckonUsingMultipleVelocitySources] Loaded
2020-03-04T17:12:55.616Z,1583341975.616 [ComponentRegistry](DEBUG): SyncComponent "DeadReckonUsingMultipleVelocitySources" handled in the control thread.
2020-03-04T17:12:55.637Z,1583341975.637 [NavChart] Loaded
2020-03-04T17:12:55.637Z,1583341975.637 [ComponentRegistry](DEBUG): SyncComponent "NavChart" handled in the control thread.
2020-03-04T17:12:55.641Z,1583341975.641 [UniversalFixResidualReporter] Loaded
2020-03-04T17:12:55.641Z,1583341975.641 [ComponentRegistry](DEBUG): SyncComponent "UniversalFixResidualReporter" handled in the control thread.
2020-03-04T17:12:55.642Z,1583341975.642 [Module Loader](DEBUG): Loaded Module: Navigation (Contains the base navigation components)
2020-03-04T17:12:55.642Z,1583341975.642 [Module Loader](DEBUG): Loading Module at Modules/Sensor.so
2020-03-04T17:12:55.994Z,1583341975.994 [DataOverHttps] Loaded
2020-03-04T17:12:55.995Z,1583341975.995 [ComponentRegistry](DEBUG): Component "DataOverHttps" handled in its own thread.
2020-03-04T17:12:55.996Z,1583341975.996 [DataOverHttps ThreadHandler](DEBUG): Created PCaller Thread at 4095A4E0
2020-03-04T17:12:55.996Z,1583341975.996 [DataOverHttps ThreadHandler](INFO): Protected caller Thread ID is 1254
2020-03-04T17:12:56.009Z,1583341976.009 [Depth_Keller] Loaded
2020-03-04T17:12:56.010Z,1583341976.010 [ComponentRegistry](DEBUG): SyncComponent "Depth_Keller" handled in the control thread.
2020-03-04T17:12:56.099Z,1583341976.099 [NAL9602] Loaded
2020-03-04T17:12:56.099Z,1583341976.099 [ComponentRegistry](DEBUG): SyncComponent "NAL9602" handled in the control thread.
2020-03-04T17:12:56.127Z,1583341976.127 [Onboard] Loaded
2020-03-04T17:12:56.128Z,1583341976.128 [ComponentRegistry](DEBUG): SyncComponent "Onboard" handled in the control thread.
2020-03-04T17:12:56.131Z,1583341976.131 [Radio_Surface] Loaded
2020-03-04T17:12:56.131Z,1583341976.131 [ComponentRegistry](DEBUG): Component "Radio_Surface" handled in its own thread.
2020-03-04T17:12:56.132Z,1583341976.132 [Radio_Surface ThreadHandler](DEBUG): Created PCaller Thread at 4098A4E0
2020-03-04T17:12:56.133Z,1583341976.133 [Radio_Surface ThreadHandler](INFO): Protected caller Thread ID is 1255
2020-03-04T17:12:56.265Z,1583341976.265 [DAT] Loaded
2020-03-04T17:12:56.265Z,1583341976.265 [ComponentRegistry](DEBUG): SyncComponent "DAT" handled in the control thread.
2020-03-04T17:12:57.529Z,1583341977.529 [BPC1] Loaded
2020-03-04T17:12:57.529Z,1583341977.529 [ComponentRegistry](DEBUG): SyncComponent "BPC1" handled in the control thread.
2020-03-04T17:12:57.529Z,1583341977.529 [Module Loader](DEBUG): Loaded Module: Sensor (Contains the sensor components)
2020-03-04T17:12:57.530Z,1583341977.530 [Module Loader](DEBUG): Loading Module at Modules/Estimation.so
2020-03-04T17:12:57.610Z,1583341977.610 [Module Loader](DEBUG): Loaded Module: Estimation (Contains the base estimation components)
2020-03-04T17:12:57.610Z,1583341977.610 [Module Loader](DEBUG): Loading Module at Modules/Control.so
2020-03-04T17:12:57.657Z,1583341977.657 [VerticalControl](DEBUG): Construct VerticalControl.
2020-03-04T17:12:57.740Z,1583341977.740 [VerticalControl] Loaded
2020-03-04T17:12:57.740Z,1583341977.740 [ComponentRegistry](DEBUG): SyncComponent "VerticalControl" handled in the control thread.
2020-03-04T17:12:57.741Z,1583341977.741 [HorizontalControl](DEBUG): Construct HorizontalControl.
2020-03-04T17:12:57.810Z,1583341977.810 [HorizontalControl] Loaded
2020-03-04T17:12:57.810Z,1583341977.810 [ComponentRegistry](DEBUG): SyncComponent "HorizontalControl" handled in the control thread.
2020-03-04T17:12:57.811Z,1583341977.811 [SpeedControl](DEBUG): Construct SpeedControl.
2020-03-04T17:12:57.812Z,1583341977.812 [SpeedControl] Loaded
2020-03-04T17:12:57.812Z,1583341977.812 [ComponentRegistry](DEBUG): SyncComponent "SpeedControl" handled in the control thread.
2020-03-04T17:12:57.813Z,1583341977.813 [LoopControl](DEBUG): Construct LoopControl.
2020-03-04T17:12:57.814Z,1583341977.814 [LoopControl] Loaded
2020-03-04T17:12:57.814Z,1583341977.814 [ComponentRegistry](DEBUG): SyncComponent "LoopControl" handled in the control thread.
2020-03-04T17:12:57.814Z,1583341977.814 [Module Loader](DEBUG): Loaded Module: Control (Contains the Control components, such as Depth, Heading, and Speed Control)
2020-03-04T17:12:57.815Z,1583341977.815 [Module Loader](DEBUG): Loading Module at Modules/Sample.so
2020-03-04T17:12:57.828Z,1583341977.828 [Module Loader](DEBUG): Loaded Module: Sample (This is a Sample Module of Sample Components)
2020-03-04T17:12:57.828Z,1583341977.828 [Module Loader](DEBUG): Loading Module at Modules/Guidance.so
2020-03-04T17:12:58.129Z,1583341978.129 [Module Loader](DEBUG): Loaded Module: Guidance (Contains behaviors and commands)
2020-03-04T17:12:58.133Z,1583341978.133 [ComponentRegistry](DEBUG): SyncComponent "MissionManager" handled in the control thread.
2020-03-04T17:12:58.134Z,1583341978.134 [ComponentRegistry](DEBUG): SyncComponent "Reporter" handled in the control thread.
2020-03-04T17:12:58.140Z,1583341978.140 [ComponentRegistry](DEBUG): Component "NavChartDb" handled in its own thread.
2020-03-04T17:12:58.141Z,1583341978.141 [NavChartDb ThreadHandler](DEBUG): Created PCaller Thread at 40AC94E0
2020-03-04T17:12:58.142Z,1583341978.142 [NavChartDb ThreadHandler](INFO): Protected caller Thread ID is 1256
2020-03-04T17:12:58.163Z,1583341978.163 [Supervisor](INFO): Main Thread ID is 1169
2020-03-04T17:12:58.164Z,1583341978.164 [Supervisor](DEBUG): Running supervisor.
2020-03-04T17:12:58.164Z,1583341978.164 [CommandLine ThreadHandler](INFO): Handler Thread ID is 1257
2020-03-04T17:12:58.165Z,1583341978.165 [controlThread ThreadHandler](INFO): Handler Thread ID is 1258
2020-03-04T17:12:58.166Z,1583341978.166 [controlThread](DEBUG): Initializing ControlThread
2020-03-04T17:12:58.167Z,1583341978.167 [SBIT](INFO): Initialize SBIT Component.
2020-03-04T17:12:58.167Z,1583341978.167 [SBIT](IMPORTANT): git: 2019-12-10
2020-03-04T17:12:58.168Z,1583341978.168 [SBIT](INFO): git hash: 66d82f7afabd4173e737eff51d4a73f4137f1e60
2020-03-04T17:12:58.168Z,1583341978.168 [SBIT](IMPORTANT): Kernel Release: 2.6.27.8
2020-03-04T17:12:58.169Z,1583341978.169 [SBIT](INFO): Kernel Reporting Different Version From Configuration.
Kernel Expected: #2 PREEMPT Thu Jan 11 20:13:48 PST 2018
Kernel Reported: #1 PREEMPT Wed Nov 13 12:38:10 PST 2019
2020-03-04T17:12:58.171Z,1583341978.171 [SBIT](INFO): Beginning SBIT in 63.000000 seconds.
2020-03-04T17:12:58.171Z,1583341978.171 [IBIT](INFO): Initialize IBIT Component.
2020-03-04T17:12:58.172Z,1583341978.172 [CBIT](DEBUG): Initialize CBIT Component.
2020-03-04T17:12:58.185Z,1583341978.185 [CBIT](DEBUG): Initialized mux pins.
2020-03-04T17:12:58.185Z,1583341978.185 [CBIT](DEBUG): Initializing the watchdog timer.
2020-03-04T17:12:58.209Z,1583341978.209 [CBIT](INFO): Last reboot was NOT due to watchdog timer.
2020-03-04T17:12:58.209Z,1583341978.209 [CBIT](DEBUG): Initializing heartbeat.
2020-03-04T17:12:58.217Z,1583341978.217 [logger ThreadHandler](INFO): Handler Thread ID is 1259
2020-03-04T17:12:58.230Z,1583341978.230 [WetLabsBB2FL ThreadHandler](INFO): Handler Thread ID is 1260
2020-03-04T17:12:58.231Z,1583341978.231 [WetLabsBB2FL](INFO): Powering down
2020-03-04T17:12:58.261Z,1583341978.261 [DataOverHttps ThreadHandler](INFO): Handler Thread ID is 1261
2020-03-04T17:12:58.262Z,1583341978.262 [DataOverHttps](DEBUG): dashIP=134.89.2.23 starts with a digit so assuming it is a numeric IP
2020-03-04T17:12:58.278Z,1583341978.278 [Radio_Surface ThreadHandler](INFO): Handler Thread ID is 1262
2020-03-04T17:12:58.281Z,1583341978.281 [CBIT](DEBUG): Deactivating GF circuits.
2020-03-04T17:12:58.281Z,1583341978.281 [CBIT](DEBUG): Deactivating emergency mode.
2020-03-04T17:12:58.293Z,1583341978.293 [NavChartDb ThreadHandler](INFO): Handler Thread ID is 1263
2020-03-04T17:12:58.296Z,1583341978.296 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US1WC07M.000
2020-03-04T17:12:58.296Z,1583341978.296 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US1WC07M.000
2020-03-04T17:12:58.296Z,1583341978.296 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US2WC11M.000
2020-03-04T17:12:58.297Z,1583341978.297 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US2WC11M.000
2020-03-04T17:12:58.297Z,1583341978.297 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US3CA52M.000
2020-03-04T17:12:58.297Z,1583341978.297 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US3CA52M.000
2020-03-04T17:12:58.297Z,1583341978.297 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US4CA60M.000
2020-03-04T17:12:58.298Z,1583341978.298 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US4CA60M.000
2020-03-04T17:12:58.298Z,1583341978.298 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA50M.000
2020-03-04T17:12:58.298Z,1583341978.298 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA50M.000
2020-03-04T17:12:58.298Z,1583341978.298 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA61M.000
2020-03-04T17:12:58.298Z,1583341978.298 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA61M.000
2020-03-04T17:12:58.298Z,1583341978.298 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA62M.000
2020-03-04T17:12:58.299Z,1583341978.299 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA62M.000
2020-03-04T17:12:58.299Z,1583341978.299 [NavChartDb](INFO): Looking for Electronic Nav Chart file at: Resources/ElectronicNavigationCharts/US5CA83M.000
2020-03-04T17:12:58.299Z,1583341978.299 [NavChartDb](INFO): Already Loaded Electronic Nav Chart data from US5CA83M.000
2020-03-04T17:12:58.317Z,1583341978.317 [CBIT](DEBUG): Backplane powered.
2020-03-04T17:12:58.321Z,1583341978.321 [DepthRateCalculator](DEBUG): Initializing DepthRateCalculator.
2020-03-04T17:12:58.322Z,1583341978.322 [PitchRateCalculator](DEBUG): Initializing PitchRateCalculator.
2020-03-04T17:12:58.322Z,1583341978.322 [SpeedCalculator](DEBUG): Initializing SpeedCalculator.
2020-03-04T17:12:58.322Z,1583341978.322 [TempGradientCalculator](DEBUG): Initializing TempGradientCalculator.
2020-03-04T17:12:58.323Z,1583341978.323 [YawRateCalculator](DEBUG): Initializing YawRateCalculator.
2020-03-04T17:12:58.323Z,1583341978.323 [ElevatorOffsetCalculator](DEBUG): Initializing ElevatorOffsetCalculator.
2020-03-04T17:12:58.324Z,1583341978.324 [NavChart](DEBUG): Initialize NavChart Navigation.
2020-03-04T17:12:58.325Z,1583341978.325 [UniversalFixResidualReporter](DEBUG): Initializing UniversalFixResidualReporter component.
2020-03-04T17:12:58.338Z,1583341978.338 [VerticalControl](DEBUG): Initialize VerticalControlComponent.
2020-03-04T17:12:58.340Z,1583341978.340 [HorizontalControl](DEBUG): Initialize HorizontalControlComponent.
2020-03-04T17:12:58.349Z,1583341978.349 [SpeedControl](DEBUG): Initialize SpeedControlComponent.
2020-03-04T17:12:58.349Z,1583341978.349 [LoopControl](DEBUG): Initialize LoopControlComponent.
2020-03-04T17:12:58.350Z,1583341978.350 [MissionManager](INFO): Loading Mission: Missions/Startup.xml
2020-03-04T17:12:58.385Z,1583341978.385 [Startup:A.GoToSurface](DEBUG): Construct GoToSurface.
2020-03-04T17:12:58.412Z,1583341978.412 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns="Tethys"
       xmlns:Control="Tethys/Control"
       xmlns:Guidance="Tethys/Guidance" 
       xmlns:Units="Tethys/Units"
       xmlns:Universal="Tethys/Universal"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                           Tethys/Control http://okeanids.mbari.org/tethys/Xml/Control.xsd
                           Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                           Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                           Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
       Id="Startup">

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="StartupSatComms">

        <Sequence/>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:latitude_fix/>
        </ReadDatum>

        <ReadDatum>
            <Timeout Duration="P1M" />
            <Universal:platform_communications/>
        </ReadDatum>

    </Aggregate>

</Mission>


2020-03-04T17:12:58.412Z,1583341978.412 [MissionManager](INFO): Loading Mission: Missions/Default.xml
2020-03-04T17:12:58.484Z,1583341978.484 [MissionManager](INFO): DefineArg Default.ElapsedSinceDefaultStarted = 0.000000 min
2020-03-04T17:12:58.493Z,1583341978.493 [Default:A.Wait](DEBUG): Construct Wait.
2020-03-04T17:12:58.495Z,1583341978.495 [Default:B.GoToSurface](DEBUG): Construct GoToSurface.
2020-03-04T17:12:58.525Z,1583341978.525 [Default:CheckIn:Read_Iridium:A_Timeout:A.Execute](DEBUG): Construct Execute.
2020-03-04T17:12:58.528Z,1583341978.528 [Default:CheckIn:C.Wait](DEBUG): Construct Wait.
2020-03-04T17:12:58.563Z,1583341978.563 [Default:E.Execute](DEBUG): Construct Execute.
2020-03-04T17:12:58.566Z,1583341978.566 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<Mission xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xmlns="Tethys"
         xmlns:Units="Tethys/Units"
         xmlns:Guidance="Tethys/Guidance"
         xmlns:Universal="Tethys/Universal"
         xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                             Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                             Tethys/Guidance http://okeanids.mbari.org/tethys/Xml/Guidance.xsd
                             Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd"
         Id="Default">

    <DefineArg Name="ElapsedSinceDefaultStarted"><Units:minute/><Value>0</Value></DefineArg>

    <Guidance:Wait>
        <Description>
            Wait a moment to see if the scheduler starts a new mission before
            starting to actually run Default.
        </Description>
        <Sequence/>
        <Setting><Guidance:Wait.duration/><Units:second/><Value>13</Value></Setting>
    </Guidance:Wait>

    <Guidance:GoToSurface>
        <Progression/>
    </Guidance:GoToSurface>

    <Aggregate Id="CheckIn">

        <Sequence Repeat="288"/>

        <ReadDatum Id="Read_GPS">
            <Timeout Duration="P5M"/>
            <Universal:time_fix/>
        </ReadDatum>

        <ReadDatum Id="Read_Iridium">
            <Timeout Duration="P2H">
                <Guidance:Execute>
                    <Sequence/>
                    <Setting><Guidance:Execute.command/><String>Burn on</String></Setting>
                </Guidance:Execute>
                <Syslog Severity="Critical">Dropped weight due to communications timeout.</Syslog>
            </Timeout>
            <Universal:platform_communications/>
        </ReadDatum>

        <Guidance:Wait>
            <Sequence/>
            <Setting><Guidance:Wait.duration/><Units:minute/><Value>5</Value></Setting>
        </Guidance:Wait>

        <Assign><Sequence/><Arg Name="ElapsedSinceDefaultStarted"/><Elapsed><Universal:mission_started/></Elapsed></Assign>

        <Syslog Severity="Important">Default mission has been running for <Arg Name="ElapsedSinceDefaultStarted"/><Units:minute/></Syslog>

    </Aggregate>

    <Syslog Severity="Important">Restarting logs and Default mission.</Syslog>

    <Guidance:Execute>
        <Sequence/>
        <Setting><Guidance:Execute.command/><String>restart logs</String></Setting>
    </Guidance:Execute>

</Mission>


2020-03-04T17:12:58.584Z,1583341978.584 [controlThread](DEBUG): Component order: CycleStarter,ESPComponent,PAR_Licor,Depth_Keller,NAL9602,Onboard,DAT,BPC1,PAR_Licor,Depth_Keller,DepthRateCalculator,PitchRateCalculator,SpeedCalculator,TempGradientCalculator,YawRateCalculator,ElevatorOffsetCalculator,DeadReckonUsingMultipleVelocitySources,NavChart,UniversalFixResidualReporter,MissionManager,VerticalControl,HorizontalControl,SpeedControl,LoopControl,BuoyancyServo,ElevatorServo,MassServo,RudderServo,ThrusterServo,SBIT,IBIT,CBIT,Reporter,LogSplitter,
2020-03-04T17:12:58.681Z,1583341978.681 [Radio_Surface](INFO): Powering up
2020-03-04T17:12:58.740Z,1583341978.740 [DAT](INFO): Powered 24V power converter LCB with command: ! echo 1 > /dev/loadB2
2020-03-04T17:12:58.740Z,1583341978.740 [DAT](INFO): Powering up
2020-03-04T17:12:58.740Z,1583341978.740 [DAT](DEBUG): Initializing DAT.
2020-03-04T17:12:58.814Z,1583341978.814 [CommandLine](IMPORTANT): got command ! echo 1 > /dev/loadB2
2020-03-04T17:12:58.863Z,1583341978.863 [BuoyancyServo](DEBUG): Initializing EZServoServo.
2020-03-04T17:12:58.873Z,1583341978.873 [BuoyancyServo](DEBUG): Initializing BuoyancyServo.
2020-03-04T17:12:58.874Z,1583341978.874 [ElevatorServo](DEBUG): Initializing EZServoServo.
2020-03-04T17:12:58.885Z,1583341978.885 [ElevatorServo](DEBUG): Initializing ElevatorServo.
2020-03-04T17:12:58.886Z,1583341978.886 [MassServo](DEBUG): Initializing EZServoServo.
2020-03-04T17:12:58.897Z,1583341978.897 [MassServo](DEBUG): Initializing MassServo.
2020-03-04T17:12:58.898Z,1583341978.898 [RudderServo](DEBUG): Initializing EZServoServo.
2020-03-04T17:12:58.912Z,1583341978.912 [RudderServo](DEBUG): Initializing RudderServo.
2020-03-04T17:12:58.913Z,1583341978.913 [ThrusterServo](DEBUG): Initializing EZServoServo.
2020-03-04T17:12:58.921Z,1583341978.921 [ThrusterServo](DEBUG): Initializing ThrusterServo.
2020-03-04T17:12:59.761Z,1583341979.761 [RudderServo](ERROR): Rudder initialization uart error serial timeout
2020-03-04T17:12:59.761Z,1583341979.761 [RudderServo](FAULT): Rudder failed to initialize
2020-03-04T17:12:59.761Z,1583341979.761 [RudderServo] Communications Fault, FailCount= 1
2020-03-04T17:12:59.761Z,1583341979.761 [RudderServo](ERROR): Communications Fault
2020-03-04T17:12:59.896Z,1583341979.896 [CBIT](ERROR): Communications Fault in component: RudderServo
2020-03-04T17:13:00.090Z,1583341980.090 [RudderServo](DEBUG): Uninitialize Rudder Servo.
2020-03-04T17:13:00.090Z,1583341980.090 [RudderServo](INFO): Powering down
2020-03-04T17:13:00.819Z,1583341980.819 [RudderServo](DEBUG): Initializing EZServoServo.
2020-03-04T17:13:00.938Z,1583341980.938 [RudderServo](DEBUG): Initializing RudderServo.
2020-03-04T17:13:00.942Z,1583341980.942 [CBIT](INFO): Clearing failed state for component RudderServo
2020-03-04T17:13:00.942Z,1583341980.942 [RudderServo] No Fault, FailCount= 1
2020-03-04T17:13:08.622Z,1583341988.622 [CBIT](CRITICAL): Environmental Failure. Press:14.762310 PSI. Humidity:36%. Temp:21 C. ABORTING MISSION
2020-03-04T17:13:08.622Z,1583341988.622 [Supervisor](INFO): Stop Mission called by CBIT::monitorEnvironmentals
2020-03-04T17:13:08.983Z,1583341988.983 [CommandLine](FAULT): Scheduling is paused
2020-03-04T17:13:08.983Z,1583341988.983 [CBIT](INFO): Critical error at 20200304T171308
2020-03-04T17:13:13.237Z,1583341993.237 [DataOverHttps](INFO): setting available, lastComms_.elapsed()=0.004598
2020-03-04T17:13:26.234Z,1583342006.234 [NAL9602](INFO): Powering up NAL9602
2020-03-04T17:13:37.142Z,1583342017.142 [NAL9602](INFO): NAL9602 initialized
2020-03-04T17:13:58.995Z,1583342038.995 [DAT](FAULT): failed to initialize, no bytes available on serial interface
2020-03-04T17:13:58.995Z,1583342038.995 [DAT] Communications Fault, FailCount= 1
2020-03-04T17:13:58.995Z,1583342038.995 [DAT](ERROR): Communications Fault
2020-03-04T17:13:59.038Z,1583342039.038 [CBIT](ERROR): Communications Fault in component: DAT
2020-03-04T17:13:59.384Z,1583342039.384 [DAT](INFO): Powering down
2020-03-04T17:14:00.198Z,1583342040.198 [CBIT](INFO): Clearing failed state for component DAT
2020-03-04T17:14:00.198Z,1583342040.198 [DAT] No Fault, FailCount= 1
2020-03-04T17:14:01.834Z,1583342041.834 [SBIT](IMPORTANT): Beginning Startup BIT
2020-03-04T17:14:01.838Z,1583342041.838 [CBIT](IMPORTANT): Beginning ground fault scan
2020-03-04T17:14:02.613Z,1583342042.613 [DAT](INFO): Powered 24V power converter LCB with command: ! echo 1 > /dev/loadB2
2020-03-04T17:14:02.613Z,1583342042.613 [DAT](INFO): Powering up
2020-03-04T17:14:02.613Z,1583342042.613 [DAT](DEBUG): Initializing DAT.
2020-03-04T17:14:02.661Z,1583342042.661 [CommandLine](IMPORTANT): got command ! echo 1 > /dev/loadB2
2020-03-04T17:14:12.577Z,1583342052.577 [CBIT](IMPORTANT): No ground fault detected
mA:
CHAN A0 (Batt): 0.004372
CHAN A1 (24V): -0.022534
CHAN A2 (12V): -0.004754
CHAN A3 (5V): -0.002925
CHAN B0 (3.3V): -0.001566
CHAN B1 (3.15aV): -0.001508
CHAN B2 (3.15bV): -0.001172
CHAN B3 (GND): -0.000001
OPEN: 0.006485
Full Scale Calc: 4.765 mA, -1.589 mA
2020-03-04T17:14:14.105Z,1583342054.105 [DAT](DEBUG): 
2020-03-04T17:14:14.106Z,1583342054.106 [DAT](DEBUG): Teledyne Benthos DAT-900 Series
2020-03-04T17:14:15.322Z,1583342055.322 [DAT](DEBUG): MF Frequency Band
2020-03-04T17:14:15.323Z,1583342055.323 [DAT](DEBUG): Directional Acoustic Transponder version 8.14.0
2020-03-04T17:14:15.324Z,1583342055.324 [DAT](DEBUG): Mar  4 2020 16:08:50 
2020-03-04T17:14:16.543Z,1583342056.543 [DAT](DEBUG): Features enabled [Bearing]
2020-03-04T17:14:16.544Z,1583342056.544 [DAT](DEBUG): CONNECT 00800 bits/sec
2020-03-04T17:14:16.544Z,1583342056.544 [DAT](INFO): commRate: 800
2020-03-04T17:14:16.948Z,1583342056.948 [DAT](INFO): entering command mode
2020-03-04T17:14:17.351Z,1583342057.351 [DAT](DEBUG): checking for command mode acknowledgment
2020-03-04T17:14:17.844Z,1583342057.844 [DAT](DEBUG): checking for command mode acknowledgment
2020-03-04T17:14:17.844Z,1583342057.844 [DAT](INFO): command mode acknowledged
2020-03-04T17:14:17.844Z,1583342057.844 [DAT](INFO): setting verbose to 3
2020-03-04T17:14:18.238Z,1583342058.238 [DAT](DEBUG): checking for verbose setting acknowledgment
2020-03-04T17:14:18.239Z,1583342058.239 [DAT](INFO): set verbose to 3
2020-03-04T17:14:18.649Z,1583342058.649 [DAT](INFO): setting transmit power to 8
2020-03-04T17:14:19.049Z,1583342059.049 [DAT](DEBUG): checking for transmit power setting acknowledgment
2020-03-04T17:14:19.462Z,1583342059.462 [DAT](DEBUG): checking for transmit power setting acknowledgment
2020-03-04T17:14:19.463Z,1583342059.463 [DAT](INFO): set transmit power to 8
2020-03-04T17:14:19.855Z,1583342059.855 [DAT](INFO): setting local address to 4
2020-03-04T17:14:20.262Z,1583342060.262 [DAT](DEBUG): checking for local address setting acknowledgment
2020-03-04T17:14:20.657Z,1583342060.657 [DAT](DEBUG): checking for local address setting acknowledgment
2020-03-04T17:14:20.658Z,1583342060.658 [DAT](INFO): set local address to 4
2020-03-04T17:14:50.778Z,1583342090.778 [CommandLine](IMPORTANT): got command get CBIT.gf24Offset
2020-03-04T17:14:50.779Z,1583342090.779 [CommandLine](IMPORTANT): CBIT.gf24Offset 172.000000 uA
2020-03-04T17:14:55.497Z,1583342095.497 [SBIT](IMPORTANT): SBIT PASSED
2020-03-04T17:14:55.581Z,1583342095.581 [CommandLine](IMPORTANT): got command configSet list
2020-03-04T17:14:55.581Z,1583342095.581 [CommandLine](IMPORTANT): Listing configuration overrides from Data/persisted.cfg
2020-03-04T17:14:55.582Z,1583342095.582 [CommandLine](IMPORTANT): BPC1.batteryMissingStickThreshold=2 count;

2020-03-04T17:14:55.582Z,1583342095.582 [CommandLine](IMPORTANT): DAT.sbdAddress=-1 enum;

2020-03-04T17:14:55.582Z,1583342095.582 [CommandLine](IMPORTANT): DVL_micro.loadAtStartup=0 bool;

2020-03-04T17:14:55.583Z,1583342095.583 [CommandLine](IMPORTANT): DropWeight.loadAtStartup=0 bool;

2020-03-04T17:14:55.583Z,1583342095.583 [CommandLine](IMPORTANT): VerticalControl.buoyancyNeutral=90 cubic_centimeter;

2020-03-04T17:14:55.583Z,1583342095.583 [CommandLine](IMPORTANT): VerticalControl.massDefault=11 millimeter;

2020-03-04T17:14:55.583Z,1583342095.583 [CommandLine](IMPORTANT): AHRS_M2.loadAtStartup=0 bool;

2020-03-04T17:14:55.583Z,1583342095.583 [CommandLine](IMPORTANT): CTD_Seabird.loadAtStartup=0 bool;

2020-03-04T17:14:55.583Z,1583342095.583 [CommandLine](IMPORTANT): Aanderaa_O2.loadAtStartup=0 bool;

2020-03-04T17:14:55.583Z,1583342095.583 [CommandLine](IMPORTANT): 

2020-03-04T17:14:55.906Z,1583342095.906 [MissionManager](IMPORTANT): Started mission Startup
2020-03-04T17:14:55.906Z,1583342095.906 [Startup] Running Loop=1
2020-03-04T17:14:55.906Z,1583342095.906 [Startup](DEBUG): Aggregate::initialize Startup
2020-03-04T17:14:55.906Z,1583342095.906 [Startup:A.GoToSurface] Running Loop=1
2020-03-04T17:14:55.906Z,1583342095.906 [Startup:A.GoToSurface](DEBUG): Initialize GoToSurfaceComponent.
2020-03-04T17:14:55.907Z,1583342095.907 [Startup:A.GoToSurface](DEBUG): No depth rate setting specified. Using default value of nan m/s.
2020-03-04T17:14:55.907Z,1583342095.907 [Startup:A.GoToSurface](DEBUG): No pitch setting specified. Using default value of nan degrees.
2020-03-04T17:14:55.908Z,1583342095.908 [Startup:A.GoToSurface](DEBUG): No speed setting specified. Using default value of 1.000000 m/s.
2020-03-04T17:14:55.908Z,1583342095.908 [Startup:A.GoToSurface](DEBUG): No surface timeout specified. Using default value of 1000.000000 seconds.
2020-03-04T17:14:55.908Z,1583342095.908 [Startup:A.GoToSurface](INFO): Received pitch timeout configuration 60.000000 seconds.
2020-03-04T17:14:55.910Z,1583342095.910 [Startup:StartupSatComms] Running Loop=1
2020-03-04T17:14:55.910Z,1583342095.910 [Startup:StartupSatComms](DEBUG): Aggregate::initialize Startup:StartupSatComms
2020-03-04T17:14:55.910Z,1583342095.910 [Startup:StartupSatComms:A] Running Loop=1
2020-03-04T17:14:56.304Z,1583342096.304 [Startup:StartupSatComms:A](DEBUG): Initialize ReadDataComponent to sense latitude_fix
2020-03-04T17:14:58.340Z,1583342098.340 [DeadReckonUsingMultipleVelocitySources](FAULT): Unable to read the rotation from vehicle frame to navigation frame for more than 120 seconds.
2020-03-04T17:14:58.340Z,1583342098.340 [DeadReckonUsingMultipleVelocitySources] Software Fault, FailCount= 1
2020-03-04T17:14:58.341Z,1583342098.341 [DeadReckonUsingMultipleVelocitySources](ERROR): Software Fault
2020-03-04T17:14:58.351Z,1583342098.351 [CBIT](ERROR): Software Fault in component: DeadReckonUsingMultipleVelocitySources
2020-03-04T17:14:58.754Z,1583342098.754 [CBIT](INFO): Clearing failed state for component DeadReckonUsingMultipleVelocitySources
2020-03-04T17:14:58.754Z,1583342098.754 [DeadReckonUsingMultipleVelocitySources] No Fault, FailCount= 1
2020-03-04T17:15:20.132Z,1583342120.132 [CommandLine](IMPORTANT): got command configSet CBIT.gf24Offset 0.000000 microampere
2020-03-04T17:15:22.903Z,1583342122.903 [CommandLine](IMPORTANT): got command gfscan
2020-03-04T17:15:22.986Z,1583342122.986 [CBIT](IMPORTANT): Beginning ground fault scan
2020-03-04T17:15:28.656Z,1583342128.656 [CommandLine](INFO): End of History
2020-03-04T17:15:28.666Z,1583342128.666 [CommandLine](INFO): End of History
2020-03-04T17:15:28.674Z,1583342128.674 [CommandLine](INFO): End of History
2020-03-04T17:15:28.703Z,1583342128.703 [CommandLine](INFO): End of History
2020-03-04T17:15:28.705Z,1583342128.705 [CommandLine](INFO): End of History
2020-03-04T17:15:28.707Z,1583342128.707 [CommandLine](INFO): End of History
2020-03-04T17:15:28.714Z,1583342128.714 [CommandLine](INFO): End of History
2020-03-04T17:15:28.715Z,1583342128.715 [CommandLine](INFO): End of History
2020-03-04T17:15:28.718Z,1583342128.718 [CommandLine](INFO): End of History
2020-03-04T17:15:28.720Z,1583342128.720 [CommandLine](INFO): End of History
2020-03-04T17:15:33.897Z,1583342133.897 [CBIT](IMPORTANT): Ground fault detected
mA:
CHAN A0 (Batt): 0.006020
CHAN A1 (24V): 0.150080
CHAN A2 (12V): -0.005076
CHAN A3 (5V): -0.002411
CHAN B0 (3.3V): -0.001081
CHAN B1 (3.15aV): -0.001482
CHAN B2 (3.15bV): -0.001628
CHAN B3 (GND): -0.000250
OPEN: 0.006788
Full Scale Calc: 4.765 mA, -1.589 mA
2020-03-04T17:15:56.106Z,1583342156.106 [Startup:StartupSatComms:A](INFO): Timed out from 2020-03-04T17:14:55.9Z
2020-03-04T17:15:56.106Z,1583342156.106 [Startup:StartupSatComms:A] Stopped
2020-03-04T17:15:56.106Z,1583342156.106 [Startup:StartupSatComms:B] Running Loop=1
2020-03-04T17:15:56.514Z,1583342156.514 [Startup:StartupSatComms:B](DEBUG): Initialize ReadDataComponent to sense platform_communications
2020-03-04T17:16:10.297Z,1583342170.297 [DataOverHttps](INFO): Sending 39 bytes from file Logs/20200304T005547/Courier0004.lzma
2020-03-04T17:16:12.302Z,1583342172.302 [DataOverHttps](INFO): Moved sent file to Logs/20200304T005547/Courier0004.lzma.bak
2020-03-04T17:16:12.303Z,1583342172.303 [DataOverHttps](INFO): SBD MOMSN=12284713
2020-03-04T17:16:21.735Z,1583342181.735 [CommandLine](IMPORTANT): got command configSet CBIT.gf24Offset 150.000000 microampere
2020-03-04T17:16:26.711Z,1583342186.711 [CommandLine](IMPORTANT): got command configSet CBIT.gf24Offset 150.000000 microampere persist
2020-03-04T17:16:29.746Z,1583342189.746 [CommandLine](IMPORTANT): got command gfscan
2020-03-04T17:16:30.086Z,1583342190.086 [CBIT](IMPORTANT): Beginning ground fault scan
2020-03-04T17:16:33.969Z,1583342193.969 [DataOverHttps](INFO): Sending 249 bytes from file Logs/20200304T171248/Courier0000.lzma
2020-03-04T17:16:35.974Z,1583342195.974 [DataOverHttps](INFO): Moved sent file to Logs/20200304T171248/Courier0000.lzma.bak
2020-03-04T17:16:35.974Z,1583342195.974 [DataOverHttps](INFO): SBD MOMSN=12284715
2020-03-04T17:16:40.973Z,1583342200.973 [CBIT](IMPORTANT): No ground fault detected
mA:
CHAN A0 (Batt): 0.005352
CHAN A1 (24V): -0.000130
CHAN A2 (12V): -0.005123
CHAN A3 (5V): -0.002727
CHAN B0 (3.3V): -0.000973
CHAN B1 (3.15aV): -0.001415
CHAN B2 (3.15bV): -0.001078
CHAN B3 (GND): 0.000149
OPEN: 0.006272
Full Scale Calc: 4.765 mA, -1.589 mA
2020-03-04T17:16:56.294Z,1583342216.294 [Startup:StartupSatComms:B](INFO): Timed out from 2020-03-04T17:15:56.1Z
2020-03-04T17:16:56.294Z,1583342216.294 [Startup:StartupSatComms:B] Stopped
2020-03-04T17:16:56.294Z,1583342216.294 [Startup:StartupSatComms](INFO): Completed Startup:StartupSatComms
2020-03-04T17:16:56.294Z,1583342216.294 [Startup:StartupSatComms] Stopped
2020-03-04T17:16:56.294Z,1583342216.294 [Startup:StartupSatComms](DEBUG): Aggregate::uninitialize Startup:StartupSatComms
2020-03-04T17:16:56.295Z,1583342216.295 [Startup](INFO): Completed Startup
2020-03-04T17:16:56.295Z,1583342216.295 [MissionManager](INFO): Startup is completed.
2020-03-04T17:16:56.295Z,1583342216.295 [MissionManager](INFO): Uninitializing Mission Startup
2020-03-04T17:16:56.295Z,1583342216.295 [Startup] Stopped
2020-03-04T17:16:56.296Z,1583342216.296 [Startup](DEBUG): Aggregate::uninitialize Startup
2020-03-04T17:16:56.296Z,1583342216.296 [Startup:A.GoToSurface] Stopped
2020-03-04T17:16:56.296Z,1583342216.296 [Startup:A.GoToSurface](DEBUG): Uninitialize GoToSurfaceComponent.
2020-03-04T17:16:56.721Z,1583342216.721 [MissionManager](IMPORTANT): Started mission Default
2020-03-04T17:16:56.721Z,1583342216.721 [Default] Running Loop=1
2020-03-04T17:16:56.721Z,1583342216.721 [Default](DEBUG): Aggregate::initialize Default
2020-03-04T17:16:56.721Z,1583342216.721 [Default:B.GoToSurface] Running Loop=1
2020-03-04T17:16:56.721Z,1583342216.721 [Default:B.GoToSurface](DEBUG): Initialize GoToSurfaceComponent.
2020-03-04T17:16:56.722Z,1583342216.722 [Default:B.GoToSurface](DEBUG): No depth rate setting specified. Using default value of nan m/s.
2020-03-04T17:16:56.722Z,1583342216.722 [Default:B.GoToSurface](DEBUG): No pitch setting specified. Using default value of nan degrees.
2020-03-04T17:16:56.722Z,1583342216.722 [Default:B.GoToSurface](DEBUG): No speed setting specified. Using default value of 1.000000 m/s.
2020-03-04T17:16:56.723Z,1583342216.723 [Default:B.GoToSurface](DEBUG): No surface timeout specified. Using default value of 1000.000000 seconds.
2020-03-04T17:16:56.723Z,1583342216.723 [Default:B.GoToSurface](INFO): Received pitch timeout configuration 60.000000 seconds.
2020-03-04T17:16:56.723Z,1583342216.723 [Default:A.Wait] Running Loop=1
2020-03-04T17:16:56.723Z,1583342216.723 [Default:A.Wait](DEBUG): Initialize Wait Component.
2020-03-04T17:16:57.986Z,1583342217.986 [DataOverHttps](INFO): Sending 808 bytes from file Logs/20200304T005547/Express0005.lzma
2020-03-04T17:16:59.600Z,1583342219.600 [DeadReckonUsingMultipleVelocitySources](FAULT): Unable to read the rotation from vehicle frame to navigation frame for more than 120 seconds.
2020-03-04T17:16:59.600Z,1583342219.600 [DeadReckonUsingMultipleVelocitySources] Software Fault, FailCount= 2
2020-03-04T17:16:59.600Z,1583342219.600 [DeadReckonUsingMultipleVelocitySources](ERROR): Software Fault
2020-03-04T17:16:59.640Z,1583342219.640 [CBIT](ERROR): Software Fault in component: DeadReckonUsingMultipleVelocitySources
2020-03-04T17:16:59.964Z,1583342219.964 [CBIT](INFO): Clearing failed state for component DeadReckonUsingMultipleVelocitySources
2020-03-04T17:16:59.964Z,1583342219.964 [DeadReckonUsingMultipleVelocitySources] No Fault, FailCount= 2
2020-03-04T17:16:59.990Z,1583342219.990 [DataOverHttps](INFO): Moved sent file to Logs/20200304T005547/Express0005.lzma.bak
2020-03-04T17:16:59.990Z,1583342219.990 [DataOverHttps](INFO): SBD MOMSN=12284719
2020-03-04T17:17:05.139Z,1583342225.139 [CommandLine](IMPORTANT): got command run ./Missions/Insert/Science.xml
2020-03-04T17:17:05.139Z,1583342225.139 [MissionManager](INFO): Loading Mission: ./Missions/Insert/Science.xml
2020-03-04T17:17:05.358Z,1583342225.358 [MissionManager](INFO): DefineArg Science.SampleISUS = 0 bool
2020-03-04T17:17:05.361Z,1583342225.361 [MissionManager](INFO): DefineArg Science.SampleISUSmaxPitch = 60.000000 arcdeg
2020-03-04T17:17:05.364Z,1583342225.364 [MissionManager](INFO): DefineArg Science.SampleISUSminPitch = -60.000000 arcdeg
2020-03-04T17:17:05.367Z,1583342225.367 [MissionManager](INFO): DefineArg Science.PeakDetectChlActive = 0 bool
2020-03-04T17:17:05.370Z,1583342225.370 [MissionManager](INFO): DefineArg Science.TimeWindowPeakReport = nan min
2020-03-04T17:17:05.373Z,1583342225.373 [MissionManager](INFO): DefineArg Science.HighestChlPeakReportActive = 0 bool
2020-03-04T17:17:05.375Z,1583342225.375 [MissionManager](INFO): DefineArg Science.PatchTracking = 0 bool
2020-03-04T17:17:05.378Z,1583342225.378 [MissionManager](INFO): DefineArg Science.FilterWidthHorizontal = 3.000000 count
2020-03-04T17:17:05.381Z,1583342225.381 [MissionManager](INFO): DefineArg Science.NumProfilesSlidingwindow = 100.000000 count
2020-03-04T17:17:05.384Z,1583342225.384 [MissionManager](INFO): DefineArg Science.OffPeakFractionHorizontal = 80.000000 %
2020-03-04T17:17:05.387Z,1583342225.387 [MissionManager](INFO): DefineArg Science.PeakDetectNO3Active = 0 bool
2020-03-04T17:17:05.390Z,1583342225.390 [MissionManager](INFO): DefineArg Science.PeakDetectOilActive = 0 bool
2020-03-04T17:17:05.392Z,1583342225.392 [MissionManager](INFO): DefineArg Science.PeakDetectFDOMActive = 0 bool
2020-03-04T17:17:05.440Z,1583342225.440 [MissionManager](INFO): DefineArg Science.UpwardDerivativeOfTemperatureActive = 0 bool
2020-03-04T17:17:05.444Z,1583342225.444 [MissionManager](INFO): DefineArg Science.EnabledAanderaaO2 = 0.000000 bool
2020-03-04T17:17:05.447Z,1583342225.447 [MissionManager](INFO): DefineArg Science.EnabledNeilBrown = 0.000000 bool
2020-03-04T17:17:05.463Z,1583342225.463 [MissionManager](INFO): DefineArg Science.EnabledSeabird = 0.000000 bool
2020-03-04T17:17:05.466Z,1583342225.466 [MissionManager](INFO): DefineArg Science.EnabledTurbulence_NPS = 0.000000 bool
2020-03-04T17:17:05.471Z,1583342225.471 [MissionManager](INFO): DefineArg Science.EnabledWetLabsBB2FL = 1.000000 bool
2020-03-04T17:17:05.487Z,1583342225.487 [MissionManager](INFO): DefineArg Science.EnabledWetLabsSeaOWL_UV_A = 0.000000 bool
2020-03-04T17:17:05.490Z,1583342225.490 [MissionManager](INFO): DefineArg Science.EnabledWetLabsUBAT = 0.000000 bool
2020-03-04T17:17:05.494Z,1583342225.494 [MissionManager](INFO): DefineArg Science.EnabledISUS = 0.000000 bool
2020-03-04T17:17:05.513Z,1583342225.513 [MissionManager](INFO): DefineArg Science.LowPassWindowLength = 20.000000 count
2020-03-04T17:17:05.516Z,1583342225.516 [MissionManager](INFO): DefineArg Science.MedianFilterLen = 5.000000 count
2020-03-04T17:17:05.519Z,1583342225.519 [MissionManager](INFO): DefineArg Science.PeakChlShallowBound = nan m
2020-03-04T17:17:05.522Z,1583342225.522 [MissionManager](INFO): DefineArg Science.PeakChlDeepBound = nan m
2020-03-04T17:17:05.525Z,1583342225.525 [MissionManager](INFO): DefineArg Science.PeakShallowBound = nan m
2020-03-04T17:17:05.528Z,1583342225.528 [MissionManager](INFO): DefineArg Science.PeakDeepBound = nan m
2020-03-04T17:17:05.587Z,1583342225.587 [MissionManager](INFO): DefineOutput Science.PeakChl = 0.000000 ug/l
2020-03-04T17:17:05.607Z,1583342225.607 [MissionManager](INFO): DefineOutput Science.PeakChlDepth = 0.000000 m
2020-03-04T17:17:05.612Z,1583342225.612 [MissionManager](INFO): DefineOutput Science.PeakChlTemperature = 0.000000 degC
2020-03-04T17:17:05.623Z,1583342225.623 [MissionManager](INFO): DefineOutput Science.PeakChlLatitude = nan arcdeg
2020-03-04T17:17:05.632Z,1583342225.632 [MissionManager](INFO): DefineOutput Science.PeakChlLongitude = nan arcdeg
2020-03-04T17:17:05.645Z,1583342225.645 [MissionManager](INFO): DefineOutput Science.PeakNO3 = 0.000000 umol/l
2020-03-04T17:17:05.649Z,1583342225.649 [MissionManager](INFO): DefineOutput Science.PeakNO3Depth = 0.000000 m
2020-03-04T17:17:05.652Z,1583342225.652 [MissionManager](INFO): DefineOutput Science.PeakNO3Latitude = nan arcdeg
2020-03-04T17:17:05.660Z,1583342225.660 [MissionManager](INFO): DefineOutput Science.PeakNO3Longitude = nan arcdeg
2020-03-04T17:17:05.668Z,1583342225.668 [MissionManager](INFO): DefineOutput Science.PatchChl = 0.000000 m
2020-03-04T17:17:05.675Z,1583342225.675 [MissionManager](INFO): DefineOutput Science.PatchChlDepth = 0.000000 m
2020-03-04T17:17:05.693Z,1583342225.693 [MissionManager](INFO): DefineOutput Science.PatchChlLatitude = nan arcdeg
2020-03-04T17:17:05.705Z,1583342225.705 [MissionManager](INFO): DefineOutput Science.PatchChlLongitude = nan arcdeg
2020-03-04T17:17:05.717Z,1583342225.717 [MissionManager](INFO): DefineOutput Science.PatchChlDistance = nan m
2020-03-04T17:17:05.730Z,1583342225.730 [MissionManager](INFO): DefineOutput Science.PeakOil = 0.000000 kg/m3
2020-03-04T17:17:05.737Z,1583342225.737 [MissionManager](INFO): DefineOutput Science.PeakOilDepth = 0.000000 m
2020-03-04T17:17:05.745Z,1583342225.745 [MissionManager](INFO): DefineOutput Science.PeakOilLatitude = nan arcdeg
2020-03-04T17:17:05.753Z,1583342225.753 [MissionManager](INFO): DefineOutput Science.PeakOilLongitude = nan arcdeg
2020-03-04T17:17:05.756Z,1583342225.756 [MissionManager](INFO): DefineOutput Science.PeakFDOM = 0.000000 ppb
2020-03-04T17:17:05.768Z,1583342225.768 [MissionManager](INFO): DefineOutput Science.PeakFDOMDepth = 0.000000 m
2020-03-04T17:17:05.775Z,1583342225.775 [MissionManager](INFO): DefineOutput Science.PeakFDOMLatitude = nan arcdeg
2020-03-04T17:17:05.779Z,1583342225.779 [MissionManager](INFO): DefineOutput Science.PeakFDOMLongitude = nan arcdeg
2020-03-04T17:17:05.794Z,1583342225.794 [MissionManager](INFO): DefineOutput Science.PatchFDOMDistance = nan m
2020-03-04T17:17:05.827Z,1583342225.827 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-03-04T17:17:05.856Z,1583342225.856 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](DEBUG): Construct PeakDetectHorizontal.
2020-03-04T17:17:05.885Z,1583342225.885 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-03-04T17:17:05.900Z,1583342225.900 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-03-04T17:17:05.927Z,1583342225.927 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Construct PeakDetectVsDepth.
2020-03-04T17:17:06.083Z,1583342226.083 [MissionManager](DEBUG): 
<?xml version="1.0" encoding="UTF-8"?>
<!-- ====================
     Generated by TethysL
     ==================== -->
<Aggregate xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
           xmlns="Tethys"
           xmlns:Units="Tethys/Units"
           xmlns:Science="Tethys/Science"
           xmlns:Universal="Tethys/Universal"
           xmlns:Trigger="Tethys/Trigger"
           xsi:schemaLocation="Tethys http://okeanids.mbari.org/tethys/Xml/Tethys.xsd
                               Tethys/Units http://okeanids.mbari.org/tethys/Xml/Units.xsd
                               Tethys/Science http://okeanids.mbari.org/tethys/Xml/Science.xsd
                               Tethys/Universal http://okeanids.mbari.org/tethys/Xml/Universal.xsd
                               Tethys/Trigger http://okeanids.mbari.org/tethys/Xml/Trigger.xsd"
       Id="Science">

    <DefineArg Name="SampleISUS"><Description>
        Set either this or PeakDetectNO3Active to True in order to sample
        Nitrate. EnabledISUS must also be true.
    </Description><False/></DefineArg>

    <DefineArg Name="SampleISUSmaxPitch"><Description>
        Maximum pitch to sample ISUS. (EnabledISUS must also be true.)
    </Description><Units:degree/><Value>60.0</Value></DefineArg>

    <DefineArg Name="SampleISUSminPitch"><Description>
        Minimum pitch to sample ISUS. (EnabledISUS must also be true.)
    </Description><Units:degree/><Value>-60.0</Value></DefineArg>

    <DefineArg Name="PeakDetectChlActive"><Description>
        Turns on peak detection of Cholorphyll.
    </Description><False/></DefineArg>

    <DefineArg Name="TimeWindowPeakReport"><Description>
        If greater than zero, report a peak every window. If NaN or zero, this
        variable is ignored.
    </Description><Units:minute/><Value>NaN</Value></DefineArg>

    <DefineArg Name="HighestChlPeakReportActive"><Description>
        Turns on reporting of the highest peak value on yo-yo profiles in a
        horizontal sliding window (of length numProfilesSlidingwindow)
    </Description><False/></DefineArg>

    <DefineArg Name="PatchTracking"><Description>
        If tracking a patch
    </Description><False/></DefineArg>

<!--debug
    </Description><True/></DefineArg>
-->

    <DefineArg Name="FilterWidthHorizontal"><Description>
        Width of boxcar filter applied to yoyo-wise chl peaks to pick out the
        highest peak.
    </Description><Units:count/><Value>3</Value></DefineArg>

    <DefineArg Name="NumProfilesSlidingwindow"><Description>
        Length of horizontal sliding window. The highest yoyo-wise chl peak
        (after low-pass filtering by a filter of length FilterWidthHorizontal)
        within this window.
    </Description><Units:count/><Value>100</Value></DefineArg>

    <DefineArg Name="OffPeakFractionHorizontal"><Description>
        When filtered horizontal value is this fraction of the peak, consider it
        outside the patch.
    </Description><Units:percent/><Value>80</Value></DefineArg>

    <DefineArg Name="PeakDetectNO3Active"><Description>
        Turns on peak detection of Nitrate (and turns on ISUS).
    </Description><False/></DefineArg>

    <DefineArg Name="PeakDetectOilActive"><Description>
        Turns on peak detection of Dissolved Oil.
    </Description><False/></DefineArg>

    <DefineArg Name="PeakDetectFDOMActive"><Description>
        Turns on peak detection of concentration_of_chromophoric_dissolved_organic_matter_in_sea_water from FDOM sensor.
    </Description><False/></DefineArg>
    
    <DefineArg Name="UpwardDerivativeOfTemperatureActive"><Description>
        Turns on seawater temperature derivative.
    </Description><False/></DefineArg>

    <DefineArg Name="EnabledAanderaaO2"><Description>
        Automatically set to True if the Aanderaa O2 sensor is installed. Set to
        false to disable reading Aandera O2.
    </Description><Science:Aanderaa_O2.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledNeilBrown"><Description>
        Automatically set to true if the Neil Brown CTD is enabled. Set to false
        to disable reading from the Neil Brown.
    </Description><Science:CTD_NeilBrown.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledSeabird"><Description>
        Automatically set to true if the CTD is enabled. Set to false to disable
        reading from the CTD.
    </Description><Science:CTD_Seabird.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledTurbulence_NPS"><Description>
        Automatically set to true if the NPS Turbulence sensor is enabled. Set
        to false to disable reading from the NPS Turbulence sensor.
    </Description><Science:Turbulence_NPS.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsBB2FL"><Description>
        Automatically set to true if the the WetLabs BB2FL is enabled. Set to
        false to disable the WetLabs BB2FL.
    </Description><Science:WetLabsBB2FL.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsSeaOWL_UV_A"><Description>
        Automatically set to true if the the WetLabs SeaOWL UV-A is enabled. Set
        to false to disable the WetLabs SeaOWL UV-A.
    </Description><Science:WetLabsSeaOWL_UV_A.loadAtStartup/></DefineArg>

    <DefineArg Name="EnabledWetLabsUBAT"><Description>
        Automatically set to true if the the WetLabs UBAT is enabled. Set
        to false to disable the WetLabs UBAT.
    </Description><Science:WetLabsUBAT.loadAtStartup/></DefineArg>    

    <DefineArg Name="EnabledISUS"><Description>
        Automatically set to True if ISUS is enabled. Set to false to disable
        ISUS.
    </Description><Science:ISUS.loadAtStartup/></DefineArg>

    <DefineArg Name="LowPassWindowLength"><Description>
        Low-pass window length (based on depth sensor sampling interval 0.4
        second) for low-pass filtering.
    </Description><Units:count/><Value>20</Value></DefineArg>

    <DefineArg Name="MedianFilterLen"><Description>
        Median filter length (only for chlorophyll fluorescence which tends to have spikes)
    </Description><Units:count/><Value>5</Value></DefineArg>

    <DefineArg Name="PeakChlShallowBound"><Description>
        Shallow depth bound for detecting chl peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

<!--debug
    </Description><Units:meter/><Value>10</Value></DefineArg>
-->

    <DefineArg Name="PeakChlDeepBound"><Description>
        Deep depth bound for detecting chl peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

<!--debug
    </Description><Units:meter/><Value>20</Value></DefineArg>
-->

    <DefineArg Name="PeakShallowBound"><Description>
        Shallow depth bound for detecting any peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineArg Name="PeakDeepBound"><Description>
        Deep depth bound for detecting any peak on each descent or ascent
        profile.
    </Description><Units:meter/><Value>NaN</Value></DefineArg>

    <DefineOutput Name="PeakChl"><Units:microgram_per_liter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlTemperature"><Units:celsius/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakChlLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakChlLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakNO3"><Units:micromole_per_liter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Depth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Latitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakNO3Longitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChl"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PatchChlDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PatchChlLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChlLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PatchChlDistance"><Units:meter/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakOil"><Units:kilogram_per_cubic_meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakOilDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakOilLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakOilLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakFDOM"><Units:part_per_billion/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMDepth"><Units:meter/><Value>0</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMLatitude"><Units:degree/><Value>NaN</Value></DefineOutput>

    <DefineOutput Name="PeakFDOMLongitude"><Units:degree/><Value>NaN</Value></DefineOutput>
    
    <DefineOutput Name="PatchFDOMDistance"><Units:meter/><Value>NaN</Value></DefineOutput>    
    
    <Parallel/>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledAanderaaO2"/>
        </While>
        <Universal:mass_concentration_of_oxygen_in_sea_water/>
    </ReadData>

    <ReadData>
        <While>
            <Arg Name="EnabledISUS"/>
            <And><Universal:platform_pitch_angle/><Lt><Arg Name="SampleISUSmaxPitch"/></Lt><And><Universal:platform_pitch_angle/><Gt><Arg Name="SampleISUSminPitch"/></Gt><And><Arg Name="SampleISUS"/><Or><Arg Name="PeakDetectNO3Active"/></Or></And></And></And>
        </While>
        <Universal:mole_concentration_of_nitrate_in_sea_water/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledNeilBrown"/>
            <Or><Arg Name="EnabledSeabird"/></Or>
        </While>
        <Universal:sea_water_temperature/>
        <Universal:sea_water_salinity/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledSeabird"/>
        </While>
        <Science:CTD_Seabird.sea_water_temperature/>
        <Science:CTD_Seabird.sea_water_salinity/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledNeilBrown"/>
            <Or><Arg Name="EnabledSeabird"/></Or>
            <And><Arg Name="UpwardDerivativeOfTemperatureActive"/></And>
        </While>
        <Universal:upward_derivative_of_sea_water_temperature/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledTurbulence_NPS"/>
        </While>
        <Science:Turbulence_NPS.MicroCond/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsBB2FL"/>
            <Or><Arg Name="PeakDetectChlActive"/></Or>
        </While>
        <Universal:mass_concentration_of_chlorophyll_in_sea_water/>
    </ReadData>

    <ReadData Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsUBAT"/>
        </While>
        <Science:WetLabsUBAT.biolum_potential/>
    </ReadData>

<!--debug-->

    <ReadData Id="Read_Oil" Strategy="MinError">
        <While>
            <Arg Name="EnabledWetLabsSeaOWL_UV_A"/>
            <Or><Arg Name="PeakDetectOilActive"/></Or>
        </While>
        <Universal:mass_concentration_of_chlorophyll_in_sea_water/>
    </ReadData>

    <Aggregate Id="PeakDetectChl">

        <While>
            <Arg Name="PeakDetectChlActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mass_concentration_of_chlorophyll_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.medianFilterLength/><Arg Name="MedianFilterLen"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakChlShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakChlDeepBound"/></Setting>
            <OutputArg Name="PeakChl"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakChlDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakChlTemperature"><Trigger:PeakDetectVsDepth.peakTemperature/></OutputArg>
            <OutputArg Name="PeakChlLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakChlLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

<!--debug
        <Syslog Severity="Important">PeakChl, PeakChlLatitude, PeakChlLongitude = <Arg Name="PeakChl"/><Units:microgram_per_liter/>, <Arg Name="PeakChlLatitude"/><Units:degree/>, <Arg Name="PeakChlLongitude"/><Units:degree/></Syslog>
-->

        <SendData Service="Express"><Arg Name="PeakChl"/><Arg Name="PeakChlDepth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="HighestChlPeakReport">

        <While>
            <Arg Name="HighestChlPeakReportActive"/>
        </While>

        <Trigger:PeakDetectHorizontal>
            <Sequence/>
            <Setting><Trigger:PeakDetectHorizontal.detectFrom/><Arg Name="PeakChl"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.depthFrom/><Arg Name="PeakChlDepth"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.latitudeFrom/><Arg Name="PeakChlLatitude"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.longitudeFrom/><Arg Name="PeakChlLongitude"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.patchTracking/><Arg Name="PatchTracking"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.filterWidth/><Arg Name="FilterWidthHorizontal"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.numProfilesSlidingwindow/><Arg Name="NumProfilesSlidingwindow"/></Setting>
            <Setting><Trigger:PeakDetectHorizontal.offPeakFraction/><Arg Name="OffPeakFractionHorizontal"/></Setting>
            <OutputArg Name="PatchChl"><Trigger:PeakDetectHorizontal.peakDetect/></OutputArg>
            <OutputArg Name="PatchChlDepth"><Trigger:PeakDetectHorizontal.peakDepth/></OutputArg>
            <OutputArg Name="PatchChlLatitude"><Trigger:PeakDetectHorizontal.peakLatitude/></OutputArg>
            <OutputArg Name="PatchChlLongitude"><Trigger:PeakDetectHorizontal.peakLongitude/></OutputArg>
            <OutputArg Name="PatchChlDistance"><Trigger:PeakDetectHorizontal.peakDistance/></OutputArg>
        </Trigger:PeakDetectHorizontal>

    </Aggregate>

    <Aggregate Id="PeakDetectNO3">

        <While>
            <Arg Name="PeakDetectNO3Active"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mole_concentration_of_nitrate_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakNO3"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakNO3Depth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakNO3Latitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakNO3Longitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakNO3"/><Arg Name="PeakNO3Depth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="PeakDetectOil">

        <While>
            <Arg Name="PeakDetectOilActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:mass_concentration_of_petroleum_hydrocarbons_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakOil"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakOilDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakOilLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakOilLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakOil"/><Arg Name="PeakOilDepth"/>
        </SendData>

    </Aggregate>

    <Aggregate Id="PeakDetectFDOM">

        <While>
            <Arg Name="PeakDetectFDOMActive"/>
        </While>

        <Trigger:PeakDetectVsDepth>
            <Sequence/>
            <Setting><Trigger:PeakDetectVsDepth.detect/><Universal:concentration_of_chromophoric_dissolved_organic_matter_in_sea_water/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.timeWindowPeakReport/><Arg Name="TimeWindowPeakReport"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.windowLength/><Arg Name="LowPassWindowLength"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.shallowBound/><Arg Name="PeakShallowBound"/></Setting>
            <Setting><Trigger:PeakDetectVsDepth.deepBound/><Arg Name="PeakDeepBound"/></Setting>
            <OutputArg Name="PeakFDOM"><Trigger:PeakDetectVsDepth.peakDetect/></OutputArg>
            <OutputArg Name="PeakFDOMDepth"><Trigger:PeakDetectVsDepth.peakDepth/></OutputArg>
            <OutputArg Name="PeakFDOMTemperature"><Trigger:PeakDetectVsDepth.peakTemperature/></OutputArg>
            <OutputArg Name="PeakFDOMLatitude"><Trigger:PeakDetectVsDepth.peakLatitude/></OutputArg>
            <OutputArg Name="PeakFDOMLongitude"><Trigger:PeakDetectVsDepth.peakLongitude/></OutputArg>
        </Trigger:PeakDetectVsDepth>

        <SendData Service="Express"><Arg Name="PeakFDOM"/><Arg Name="PeakFDOMDepth"/>
        </SendData>

    </Aggregate>

</Aggregate>


2020-03-04T17:17:06.102Z,1583342226.102 [CommandLine](IMPORTANT): Running ./Missions/Insert/Science.xml
2020-03-04T17:17:06.392Z,1583342226.392 [Default] Stopped
2020-03-04T17:17:06.392Z,1583342226.392 [Default](DEBUG): Aggregate::uninitialize Default
2020-03-04T17:17:06.392Z,1583342226.392 [Default:A.Wait] Stopped
2020-03-04T17:17:06.393Z,1583342226.393 [Default:A.Wait](DEBUG): Uninitialize Wait Component.
2020-03-04T17:17:06.393Z,1583342226.393 [Default:B.GoToSurface] Stopped
2020-03-04T17:17:06.393Z,1583342226.393 [Default:B.GoToSurface](DEBUG): Uninitialize GoToSurfaceComponent.
2020-03-04T17:17:06.393Z,1583342226.393 [MissionManager](IMPORTANT): Started mission Science
2020-03-04T17:17:06.393Z,1583342226.393 [Science] Running Loop=1
2020-03-04T17:17:06.393Z,1583342226.393 [Science](DEBUG): Aggregate::initialize Science
2020-03-04T17:17:06.393Z,1583342226.393 [Science:A] Running Loop=1
2020-03-04T17:17:06.393Z,1583342226.393 [Science:B] Running Loop=1
2020-03-04T17:17:06.393Z,1583342226.393 [Science:C] Running Loop=1
2020-03-04T17:17:06.394Z,1583342226.394 [Science:D] Running Loop=1
2020-03-04T17:17:06.394Z,1583342226.394 [Science:E] Running Loop=1
2020-03-04T17:17:06.394Z,1583342226.394 [Science:F] Running Loop=1
2020-03-04T17:17:06.394Z,1583342226.394 [Science:G] Running Loop=1
2020-03-04T17:17:06.394Z,1583342226.394 [Science:H] Running Loop=1
2020-03-04T17:17:06.394Z,1583342226.394 [Science:Read_Oil] Running Loop=1
2020-03-04T17:17:06.394Z,1583342226.394 [Science:PeakDetectChl] Running Loop=1
2020-03-04T17:17:06.394Z,1583342226.394 [Science:PeakDetectChl](DEBUG): Aggregate::initialize Science:PeakDetectChl
2020-03-04T17:17:06.394Z,1583342226.394 [Science:PeakDetectChl:A.PeakDetectVsDepth] Running Loop=1
2020-03-04T17:17:06.394Z,1583342226.394 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-03-04T17:17:06.396Z,1583342226.396 [Science:HighestChlPeakReport] Running Loop=1
2020-03-04T17:17:06.396Z,1583342226.396 [Science:HighestChlPeakReport](DEBUG): Aggregate::initialize Science:HighestChlPeakReport
2020-03-04T17:17:06.396Z,1583342226.396 [Science:HighestChlPeakReport:A.PeakDetectHorizontal] Running Loop=1
2020-03-04T17:17:06.396Z,1583342226.396 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](INFO): Initialize.
2020-03-04T17:17:06.417Z,1583342226.417 [Science:PeakDetectNO3] Running Loop=1
2020-03-04T17:17:06.417Z,1583342226.417 [Science:PeakDetectNO3](DEBUG): Aggregate::initialize Science:PeakDetectNO3
2020-03-04T17:17:06.417Z,1583342226.417 [Science:PeakDetectNO3:A.PeakDetectVsDepth] Running Loop=1
2020-03-04T17:17:06.417Z,1583342226.417 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-03-04T17:17:06.419Z,1583342226.419 [Science:PeakDetectOil] Running Loop=1
2020-03-04T17:17:06.419Z,1583342226.419 [Science:PeakDetectOil](DEBUG): Aggregate::initialize Science:PeakDetectOil
2020-03-04T17:17:06.420Z,1583342226.420 [Science:PeakDetectOil:A.PeakDetectVsDepth] Running Loop=1
2020-03-04T17:17:06.420Z,1583342226.420 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-03-04T17:17:06.422Z,1583342226.422 [Science:PeakDetectFDOM] Running Loop=1
2020-03-04T17:17:06.422Z,1583342226.422 [Science:PeakDetectFDOM](DEBUG): Aggregate::initialize Science:PeakDetectFDOM
2020-03-04T17:17:06.422Z,1583342226.422 [Science:PeakDetectFDOM:A.PeakDetectVsDepth] Running Loop=1
2020-03-04T17:17:06.422Z,1583342226.422 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Initialize.
2020-03-04T17:17:06.424Z,1583342226.424 [Science:PeakDetectFDOM] Stopped
2020-03-04T17:17:06.424Z,1583342226.424 [Science:PeakDetectFDOM](DEBUG): Aggregate::uninitialize Science:PeakDetectFDOM
2020-03-04T17:17:06.441Z,1583342226.441 [Science:PeakDetectFDOM:A.PeakDetectVsDepth] Stopped
2020-03-04T17:17:06.441Z,1583342226.441 [Science:PeakDetectFDOM:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-03-04T17:17:06.441Z,1583342226.441 [Science:PeakDetectOil] Stopped
2020-03-04T17:17:06.441Z,1583342226.441 [Science:PeakDetectOil](DEBUG): Aggregate::uninitialize Science:PeakDetectOil
2020-03-04T17:17:06.441Z,1583342226.441 [Science:PeakDetectOil:A.PeakDetectVsDepth] Stopped
2020-03-04T17:17:06.441Z,1583342226.441 [Science:PeakDetectOil:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-03-04T17:17:06.441Z,1583342226.441 [Science:PeakDetectNO3] Stopped
2020-03-04T17:17:06.441Z,1583342226.441 [Science:PeakDetectNO3](DEBUG): Aggregate::uninitialize Science:PeakDetectNO3
2020-03-04T17:17:06.441Z,1583342226.441 [Science:PeakDetectNO3:A.PeakDetectVsDepth] Stopped
2020-03-04T17:17:06.441Z,1583342226.441 [Science:PeakDetectNO3:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-03-04T17:17:06.441Z,1583342226.441 [Science:HighestChlPeakReport] Stopped
2020-03-04T17:17:06.442Z,1583342226.442 [Science:HighestChlPeakReport](DEBUG): Aggregate::uninitialize Science:HighestChlPeakReport
2020-03-04T17:17:06.442Z,1583342226.442 [Science:HighestChlPeakReport:A.PeakDetectHorizontal] Stopped
2020-03-04T17:17:06.442Z,1583342226.442 [Science:HighestChlPeakReport:A.PeakDetectHorizontal](DEBUG): Uninitialize.
2020-03-04T17:17:06.442Z,1583342226.442 [Science:PeakDetectChl] Stopped
2020-03-04T17:17:06.442Z,1583342226.442 [Science:PeakDetectChl](DEBUG): Aggregate::uninitialize Science:PeakDetectChl
2020-03-04T17:17:06.442Z,1583342226.442 [Science:PeakDetectChl:A.PeakDetectVsDepth] Stopped
2020-03-04T17:17:06.442Z,1583342226.442 [Science:PeakDetectChl:A.PeakDetectVsDepth](DEBUG): Uninitialize.
2020-03-04T17:17:06.442Z,1583342226.442 [Science:Read_Oil] Stopped
2020-03-04T17:17:06.442Z,1583342226.442 [Science:H] Stopped
2020-03-04T17:17:06.442Z,1583342226.442 [Science:G] Running Loop=1
2020-03-04T17:17:06.443Z,1583342226.443 [Science:G](DEBUG): Initialize ReadDataComponent to sense mass_concentration_of_chlorophyll_in_sea_water
2020-03-04T17:17:06.443Z,1583342226.443 [Science:F] Stopped
2020-03-04T17:17:06.443Z,1583342226.443 [Science:E] Stopped
2020-03-04T17:17:06.443Z,1583342226.443 [Science:D] Stopped
2020-03-04T17:17:06.443Z,1583342226.443 [Science:C] Stopped
2020-03-04T17:17:06.443Z,1583342226.443 [Science:B] Stopped
2020-03-04T17:17:06.443Z,1583342226.443 [Science:A] Stopped
2020-03-04T17:17:06.726Z,1583342226.726 [WetLabsBB2FL](INFO): Opening uart, block timeout 10ths=2
2020-03-04T17:17:06.726Z,1583342226.726 [WetLabsBB2FL](INFO): Powering up
2020-03-04T17:17:20.537Z,1583342240.537 [DAT](INFO): unknown deviceResponse_: Lowpower

2020-03-04T17:17:43.870Z,1583342263.870 [CommandLine](IMPORTANT): got command show variable ctd_seabird
2020-03-04T17:17:44.046Z,1583342264.046 [CommandLine](IMPORTANT): CTD_Seabird.loadControl (none)
2020-03-04T17:17:44.046Z,1583342264.046 [CommandLine](IMPORTANT): CTD_Seabird.uart (none)
2020-03-04T17:17:44.046Z,1583342264.046 [CommandLine](IMPORTANT): CTD_Seabird.baud (bit_per_second)
2020-03-04T17:17:44.047Z,1583342264.047 [CommandLine](IMPORTANT): CTD_SeabirdLCM.loadControl (none)
2020-03-04T17:17:44.047Z,1583342264.047 [CommandLine](IMPORTANT): CTD_SeabirdLCM.uart (none)
2020-03-04T17:17:44.048Z,1583342264.048 [CommandLine](IMPORTANT): CTD_SeabirdLCM.baud (bit_per_second)
2020-03-04T17:17:44.048Z,1583342264.048 [CommandLine](IMPORTANT): CTD_SeabirdLCM.lcmApplication (none)
2020-03-04T17:17:44.126Z,1583342264.126 [CommandLine](IMPORTANT): CTD_Seabird.loadAtStartup (bool)
2020-03-04T17:17:44.126Z,1583342264.126 [CommandLine](IMPORTANT): CTD_Seabird.simulateHardware (bool)
2020-03-04T17:17:44.127Z,1583342264.127 [CommandLine](IMPORTANT): CTD_Seabird.maxPressBound (decibar)
2020-03-04T17:17:44.127Z,1583342264.127 [CommandLine](IMPORTANT): CTD_Seabird.minPressBound (decibar)
2020-03-04T17:17:44.127Z,1583342264.127 [CommandLine](IMPORTANT): CTD_Seabird.maxSalinityBound (practical_salinity_unit)
2020-03-04T17:17:44.128Z,1583342264.128 [CommandLine](IMPORTANT): CTD_Seabird.minSalinityBound (practical_salinity_unit)
2020-03-04T17:17:44.128Z,1583342264.128 [CommandLine](IMPORTANT): CTD_Seabird.offset (decibar)
2020-03-04T17:17:44.133Z,1583342264.133 [CommandLine](IMPORTANT): CTD_Seabird.verbosity (count)
2020-03-04T17:17:44.134Z,1583342264.134 [CommandLine](IMPORTANT): CTD_Seabird.SBE43FSerialNumber (none)
2020-03-04T17:17:44.134Z,1583342264.134 [CommandLine](IMPORTANT): CTD_Seabird.oxygenCalCoeffFOffset (none)
2020-03-04T17:17:44.135Z,1583342264.135 [CommandLine](IMPORTANT): CTD_Seabird.oxygenCalCoeffSoc (none)
2020-03-04T17:17:44.135Z,1583342264.135 [CommandLine](IMPORTANT): CTD_Seabird.oxygenCalCoeffA (none)
2020-03-04T17:17:44.135Z,1583342264.135 [CommandLine](IMPORTANT): CTD_Seabird.oxygenCalCoeffB (none)
2020-03-04T17:17:44.136Z,1583342264.136 [CommandLine](IMPORTANT): CTD_Seabird.oxygenCalCoeffC (none)
2020-03-04T17:17:44.136Z,1583342264.136 [CommandLine](IMPORTANT): CTD_Seabird.oxygenCalCoeffE (none)
2020-03-04T17:17:44.152Z,1583342264.152 [CommandLine](IMPORTANT): CTD_SeabirdLCM.loadAtStartup (bool)
2020-03-04T17:17:44.152Z,1583342264.152 [CommandLine](IMPORTANT): CTD_SeabirdLCM.simulateHardware (bool)
2020-03-04T17:17:44.153Z,1583342264.153 [CommandLine](IMPORTANT): CTD_SeabirdLCM.maxPressBound (decibar)
2020-03-04T17:17:44.153Z,1583342264.153 [CommandLine](IMPORTANT): CTD_SeabirdLCM.minPressBound (decibar)
2020-03-04T17:17:44.154Z,1583342264.154 [CommandLine](IMPORTANT): CTD_SeabirdLCM.maxSalinityBound (practical_salinity_unit)
2020-03-04T17:17:44.154Z,1583342264.154 [CommandLine](IMPORTANT): CTD_SeabirdLCM.minSalinityBound (practical_salinity_unit)
2020-03-04T17:18:00.327Z,1583342280.327 [CommandLine](IMPORTANT): got command get CTD_Seabird.loadAtStartup
2020-03-04T17:18:00.327Z,1583342280.327 [CommandLine](IMPORTANT): CTD_Seabird.loadAtStartup 0 bool
2020-03-04T17:18:40.498Z,1583342320.498 [NAL9602](FAULT): MT Queue status failed to be acquired within timeout. Will not retry this session.
2020-03-04T17:18:59.227Z,1583342339.227 [CommandLine](IMPORTANT): got command restart application
2020-03-04T17:19:00.233Z,1583342340.233 [Supervisor](INFO): Stop Mission called by Supervisor::terminate
2020-03-04T17:19:00.233Z,1583342340.233 [CommandLine ThreadHandler](INFO): Uninitializing protected caller thread.
2020-03-04T17:19:00.234Z,1583342340.234 [CommandLine ThreadHandler](INFO): Thread cancelled.
2020-03-04T17:19:00.253Z,1583342340.253 [Supervisor](DEBUG): Uninitializing supervisor and starting cleanup.  Bye!
2020-03-04T17:19:00.253Z,1583342340.253 [CommandLine ThreadHandler](INFO): Thread cancelled.
2020-03-04T17:19:00.254Z,1583342340.254 [CommandLine](INFO): Join timeout helper Thread ID is 1292
2020-03-04T17:19:00.255Z,1583342340.255 [ComponentRegistry](INFO): Shutting down NavChartDb ThreadHandler
2020-03-04T17:19:00.255Z,1583342340.255 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2020-03-04T17:19:00.255Z,1583342340.255 [NavChartDb](INFO): Join timeout helper Thread ID is 1293
2020-03-04T17:19:00.373Z,1583342340.373 [NavChartDb ThreadHandler](INFO): Uninitializing protected caller thread.
2020-03-04T17:19:00.373Z,1583342340.373 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2020-03-04T17:19:00.393Z,1583342340.393 [ComponentRegistry](INFO): Shutting down Radio_Surface ThreadHandler
2020-03-04T17:19:00.393Z,1583342340.393 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2020-03-04T17:19:00.393Z,1583342340.393 [Radio_Surface](INFO): Join timeout helper Thread ID is 1294
2020-03-04T17:19:00.395Z,1583342340.395 [MissionManager](INFO): MissionManager is completed.
2020-03-04T17:19:00.395Z,1583342340.395 [MissionManager](INFO): Uninitializing Mission Science
2020-03-04T17:19:00.395Z,1583342340.395 [Science] Stopped
2020-03-04T17:19:00.395Z,1583342340.395 [Science](DEBUG): Aggregate::uninitialize Science
2020-03-04T17:19:00.395Z,1583342340.395 [Science:G] Stopped
2020-03-04T17:19:00.397Z,1583342340.397 [Radio_Surface](INFO): Powering down
2020-03-04T17:19:00.398Z,1583342340.398 [Radio_Surface ThreadHandler](INFO): Uninitializing protected caller thread.
2020-03-04T17:19:00.398Z,1583342340.398 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2020-03-04T17:19:00.427Z,1583342340.427 [ComponentRegistry](INFO): Shutting down DataOverHttps ThreadHandler
2020-03-04T17:19:00.427Z,1583342340.427 [DataOverHttps ThreadHandler](INFO): Thread cancelled.
2020-03-04T17:19:00.427Z,1583342340.427 [DataOverHttps](INFO): Join timeout helper Thread ID is 1295
2020-03-04T17:19:00.744Z,1583342340.744 [DeadReckonUsingMultipleVelocitySources](FAULT): Unable to read the rotation from vehicle frame to navigation frame for more than 120 seconds.
2020-03-04T17:19:00.744Z,1583342340.744 [DeadReckonUsingMultipleVelocitySources] Software Fault, FailCount= 3
2020-03-04T17:19:00.744Z,1583342340.744 [DeadReckonUsingMultipleVelocitySources](ERROR): Software Fault
2020-03-04T17:19:00.746Z,1583342340.746 [MissionManager](IMPORTANT): Started mission Default
2020-03-04T17:19:00.746Z,1583342340.746 [Default] Running Loop=1
2020-03-04T17:19:00.746Z,1583342340.746 [Default](DEBUG): Aggregate::initialize Default
2020-03-04T17:19:00.746Z,1583342340.746 [Default:B.GoToSurface] Running Loop=1
2020-03-04T17:19:00.746Z,1583342340.746 [Default:B.GoToSurface](DEBUG): Initialize GoToSurfaceComponent.
2020-03-04T17:19:00.747Z,1583342340.747 [Default:B.GoToSurface](DEBUG): No depth rate setting specified. Using default value of nan m/s.
2020-03-04T17:19:00.747Z,1583342340.747 [Default:B.GoToSurface](DEBUG): No pitch setting specified. Using default value of nan degrees.
2020-03-04T17:19:00.747Z,1583342340.747 [Default:B.GoToSurface](DEBUG): No speed setting specified. Using default value of 1.000000 m/s.
2020-03-04T17:19:00.748Z,1583342340.748 [Default:B.GoToSurface](DEBUG): No surface timeout specified. Using default value of 1000.000000 seconds.
2020-03-04T17:19:00.748Z,1583342340.748 [Default:B.GoToSurface](INFO): Received pitch timeout configuration 60.000000 seconds.
2020-03-04T17:19:00.748Z,1583342340.748 [Default:A.Wait] Running Loop=1
2020-03-04T17:19:00.748Z,1583342340.748 [Default:A.Wait](DEBUG): Initialize Wait Component.
2020-03-04T17:19:00.758Z,1583342340.758 [CBIT](ERROR): Software Fault in component: DeadReckonUsingMultipleVelocitySources
2020-03-04T17:19:00.769Z,1583342340.769 [WetLabsBB2FL](INFO): Powering down
2020-03-04T17:19:01.153Z,1583342341.153 [CBIT](INFO): Clearing failed state for component DeadReckonUsingMultipleVelocitySources
2020-03-04T17:19:01.153Z,1583342341.153 [DeadReckonUsingMultipleVelocitySources] No Fault, FailCount= 3
2020-03-04T17:19:01.169Z,1583342341.169 [DataOverHttps ThreadHandler](INFO): Uninitializing protected caller thread.
2020-03-04T17:19:01.169Z,1583342341.169 [DataOverHttps ThreadHandler](INFO): Thread cancelled.
2020-03-04T17:19:01.185Z,1583342341.185 [ComponentRegistry](INFO): Shutting down WetLabsBB2FL ThreadHandler
2020-03-04T17:19:01.185Z,1583342341.185 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2020-03-04T17:19:01.185Z,1583342341.185 [WetLabsBB2FL](INFO): Join timeout helper Thread ID is 1296
2020-03-04T17:19:01.681Z,1583342341.681 [WetLabsBB2FL ThreadHandler](INFO): Uninitializing protected caller thread.
2020-03-04T17:19:01.681Z,1583342341.681 [WetLabsBB2FL](INFO): Powering down
2020-03-04T17:19:01.682Z,1583342341.682 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2020-03-04T17:19:01.686Z,1583342341.686 [ComponentRegistry](INFO): Shutting down logger ThreadHandler
2020-03-04T17:19:01.686Z,1583342341.686 [logger ThreadHandler](INFO): Thread cancelled.
2020-03-04T17:19:01.686Z,1583342341.686 [logger](INFO): Join timeout helper Thread ID is 1297
2020-03-04T17:19:01.713Z,1583342341.713 [logger ThreadHandler](INFO): Uninitializing protected caller thread.
2020-03-04T17:19:01.713Z,1583342341.713 [logger ThreadHandler](INFO): Thread cancelled.
2020-03-04T17:19:01.725Z,1583342341.725 [ComponentRegistry](INFO): Shutting down CommandLine ThreadHandler
2020-03-04T17:19:01.726Z,1583342341.726 [CommandLine ThreadHandler](INFO): Thread cancelled.
2020-03-04T17:19:01.726Z,1583342341.726 [ComponentRegistry](INFO): Shutting down controlThread ThreadHandler
2020-03-04T17:19:01.726Z,1583342341.726 [controlThread ThreadHandler](INFO): Thread cancelled.
2020-03-04T17:19:01.726Z,1583342341.726 [controlThread](INFO): Join timeout helper Thread ID is 1298
2020-03-04T17:19:01.897Z,1583342341.897 [controlThread ThreadHandler](INFO): Uninitializing protected caller thread.
2020-03-04T17:19:01.897Z,1583342341.897 [controlThread](DEBUG): Uninitializing ControlThread
2020-03-04T17:19:01.918Z,1583342341.918 [NAL9602](INFO): Powering down
2020-03-04T17:19:01.920Z,1583342341.920 [DAT](INFO): Powering down
2020-03-04T17:19:02.038Z,1583342342.038 [DepthRateCalculator](DEBUG): Uninitializing DepthRateCalculator.
2020-03-04T17:19:02.039Z,1583342342.039 [ElevatorOffsetCalculator](DEBUG): Uninitializing ElevatorOffsetCalculator.
2020-03-04T17:19:02.039Z,1583342342.039 [NavChart](DEBUG): Uninitialize NavChart Navigation.
2020-03-04T17:19:02.040Z,1583342342.040 [MissionManager](INFO): Uninitializing Mission Default
2020-03-04T17:19:02.040Z,1583342342.040 [Default] Stopped
2020-03-04T17:19:02.040Z,1583342342.040 [Default](DEBUG): Aggregate::uninitialize Default
2020-03-04T17:19:02.040Z,1583342342.040 [Default:A.Wait] Stopped
2020-03-04T17:19:02.040Z,1583342342.040 [Default:A.Wait](DEBUG): Uninitialize Wait Component.
2020-03-04T17:19:02.040Z,1583342342.040 [Default:B.GoToSurface] Stopped
2020-03-04T17:19:02.040Z,1583342342.040 [Default:B.GoToSurface](DEBUG): Uninitialize GoToSurfaceComponent.
2020-03-04T17:19:02.043Z,1583342342.043 [VerticalControl](DEBUG): Uninitialize VerticalControlComponent.
2020-03-04T17:19:02.043Z,1583342342.043 [HorizontalControl](DEBUG): Uninitialize HorizontalControlComponent.
2020-03-04T17:19:02.043Z,1583342342.043 [SpeedControl](DEBUG): Uninitialize SpeedControlComponent.
2020-03-04T17:19:02.043Z,1583342342.043 [LoopControl](DEBUG): Uninitialize LoopControlComponent.
2020-03-04T17:19:02.044Z,1583342342.044 [BuoyancyServo](DEBUG): Uninitialize Buoyancy Servo.
2020-03-04T17:19:02.044Z,1583342342.044 [BuoyancyServo](INFO): Powering down
2020-03-04T17:19:02.057Z,1583342342.057 [ElevatorServo](DEBUG): Uninitialize Elevator Servo.
2020-03-04T17:19:02.057Z,1583342342.057 [ElevatorServo](INFO): Powering down
2020-03-04T17:19:02.058Z,1583342342.058 [MassServo](DEBUG): Uninitialize Mass Servo.
2020-03-04T17:19:02.058Z,1583342342.058 [MassServo](INFO): Powering down
2020-03-04T17:19:02.059Z,1583342342.059 [RudderServo](DEBUG): Uninitialize Rudder Servo.
2020-03-04T17:19:02.059Z,1583342342.059 [RudderServo](INFO): Powering down
2020-03-04T17:19:02.059Z,1583342342.059 [ThrusterServo](DEBUG): Uninitialize Thruster Servo.
2020-03-04T17:19:02.060Z,1583342342.060 [ThrusterServo](INFO): Powering down
2020-03-04T17:19:02.060Z,1583342342.060 [SBIT](DEBUG): Uninitialize SBIT Component.
2020-03-04T17:19:02.061Z,1583342342.061 [IBIT](DEBUG): Uninitialize IBIT Component.
2020-03-04T17:19:02.061Z,1583342342.061 [CBIT](DEBUG): Uninitialize CBIT Component.
2020-03-04T17:19:02.061Z,1583342342.061 [CBIT](DEBUG): Powering off loads.
2020-03-04T17:19:02.073Z,1583342342.073 [CBIT](DEBUG): Disabling WDT.
2020-03-04T17:19:02.085Z,1583342342.085 [CBIT](DEBUG): Opening all GF detection circuits.
2020-03-04T17:19:02.085Z,1583342342.085 [controlThread ThreadHandler](INFO): Thread cancelled.
2020-03-04T17:19:02.119Z,1583342342.119 [WetLabsBB2FL ThreadHandler](INFO): Thread cancelled.
2020-03-04T17:19:02.187Z,1583342342.187 [Radio_Surface ThreadHandler](INFO): Thread cancelled.
2020-03-04T17:19:02.192Z,1583342342.192 [DataOverHttps ThreadHandler](INFO): Thread cancelled.
2020-03-04T17:19:02.244Z,1583342342.244 [NavChartDb ThreadHandler](INFO): Thread cancelled.
2020-03-04T17:19:02.303Z,1583342342.303 [logger ThreadHandler](INFO): Thread cancelled.